data_6T6J # _model_server_result.job_id owwIV199gjnbGoCw789EeQ _model_server_result.datetime_utc '2025-01-11 06:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6T6J # _exptl.entry_id 6T6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.37 _cell.angle_gamma 90 _cell.entry_id 6T6J _cell.length_a 85.306 _cell.length_b 48.835 _cell.length_c 66.749 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 3 A HIS 214 1_555 D NI NI . A NI 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A NE2 HIS 3 A HIS 214 1_555 D NI NI . A NI 301 2_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A NE2 HIS 4 A HIS 215 1_555 E NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A NE2 HIS 6 A HIS 217 1_555 E NI NI . A NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc5 D NI NI . A NI 301 1_555 B NE2 HIS 3 B HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc6 D NI NI . A NI 301 2_556 B NE2 HIS 3 B HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc7 D NI NI . A NI 301 1_555 C NE2 HIS 3 C HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 D NI NI . A NI 301 2_556 C NE2 HIS 3 C HIS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc9 E NI NI . A NI 302 1_555 B NE2 HIS 4 B HIS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc10 E NI NI . A NI 302 1_555 B NE2 HIS 6 B HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc11 E NI NI . A NI 302 1_555 C NE2 HIS 4 C HIS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc12 E NI NI . A NI 302 1_555 C NE2 HIS 6 C HIS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T6J _atom_sites.fract_transf_matrix[1][1] 0.011723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NI A 1 301 161 NI NI . E 2 NI A 1 302 162 NI NI . F 3 HOH A 1 401 102 HOH HOH . F 3 HOH A 2 402 105 HOH HOH . F 3 HOH A 3 403 94 HOH HOH . F 3 HOH A 4 404 28 HOH HOH . F 3 HOH A 5 405 1 HOH HOH . F 3 HOH A 6 406 10 HOH HOH . F 3 HOH A 7 407 19 HOH HOH . F 3 HOH A 8 408 15 HOH HOH . F 3 HOH A 9 409 44 HOH HOH . F 3 HOH A 10 410 35 HOH HOH . F 3 HOH A 11 411 12 HOH HOH . F 3 HOH A 12 412 73 HOH HOH . F 3 HOH A 13 413 74 HOH HOH . F 3 HOH A 14 414 17 HOH HOH . F 3 HOH A 15 415 16 HOH HOH . F 3 HOH A 16 416 18 HOH HOH . F 3 HOH A 17 417 85 HOH HOH . F 3 HOH A 18 418 32 HOH HOH . F 3 HOH A 19 419 8 HOH HOH . F 3 HOH A 20 420 41 HOH HOH . F 3 HOH A 21 421 31 HOH HOH . F 3 HOH A 22 422 87 HOH HOH . F 3 HOH A 23 423 29 HOH HOH . F 3 HOH A 24 424 65 HOH HOH . F 3 HOH A 25 425 91 HOH HOH . F 3 HOH A 26 426 92 HOH HOH . F 3 HOH A 27 427 51 HOH HOH . F 3 HOH A 28 428 82 HOH HOH . F 3 HOH A 29 429 39 HOH HOH . G 3 HOH B 1 301 101 HOH HOH . G 3 HOH B 2 302 9 HOH HOH . G 3 HOH B 3 303 53 HOH HOH . G 3 HOH B 4 304 68 HOH HOH . G 3 HOH B 5 305 52 HOH HOH . G 3 HOH B 6 306 30 HOH HOH . G 3 HOH B 7 307 20 HOH HOH . G 3 HOH B 8 308 50 HOH HOH . G 3 HOH B 9 309 33 HOH HOH . G 3 HOH B 10 310 3 HOH HOH . G 3 HOH B 11 311 24 HOH HOH . G 3 HOH B 12 312 43 HOH HOH . G 3 HOH B 13 313 60 HOH HOH . G 3 HOH B 14 314 26 HOH HOH . G 3 HOH B 15 315 25 HOH HOH . G 3 HOH B 16 316 5 HOH HOH . G 3 HOH B 17 317 23 HOH HOH . G 3 HOH B 18 318 7 HOH HOH . G 3 HOH B 19 319 11 HOH HOH . G 3 HOH B 20 320 97 HOH HOH . G 3 HOH B 21 321 71 HOH HOH . G 3 HOH B 22 322 37 HOH HOH . G 3 HOH B 23 323 77 HOH HOH . G 3 HOH B 24 324 98 HOH HOH . G 3 HOH B 25 325 57 HOH HOH . G 3 HOH B 26 326 46 HOH HOH . G 3 HOH B 27 327 64 HOH HOH . G 3 HOH B 28 328 90 HOH HOH . G 3 HOH B 29 329 81 HOH HOH . H 3 HOH C 1 301 70 HOH HOH . H 3 HOH C 2 302 69 HOH HOH . H 3 HOH C 3 303 21 HOH HOH . H 3 HOH C 4 304 2 HOH HOH . H 3 HOH C 5 305 67 HOH HOH . H 3 HOH C 6 306 72 HOH HOH . H 3 HOH C 7 307 56 HOH HOH . H 3 HOH C 8 308 54 HOH HOH . H 3 HOH C 9 309 47 HOH HOH . H 3 HOH C 10 310 22 HOH HOH . H 3 HOH C 11 311 13 HOH HOH . H 3 HOH C 12 312 36 HOH HOH . H 3 HOH C 13 313 40 HOH HOH . H 3 HOH C 14 314 75 HOH HOH . H 3 HOH C 15 315 27 HOH HOH . H 3 HOH C 16 316 6 HOH HOH . H 3 HOH C 17 317 14 HOH HOH . H 3 HOH C 18 318 4 HOH HOH . H 3 HOH C 19 319 78 HOH HOH . H 3 HOH C 20 320 100 HOH HOH . H 3 HOH C 21 321 62 HOH HOH . H 3 HOH C 22 322 104 HOH HOH . H 3 HOH C 23 323 99 HOH HOH . H 3 HOH C 24 324 95 HOH HOH . H 3 HOH C 25 325 42 HOH HOH . H 3 HOH C 26 326 55 HOH HOH . H 3 HOH C 27 327 103 HOH HOH . H 3 HOH C 28 328 59 HOH HOH . H 3 HOH C 29 329 58 HOH HOH . H 3 HOH C 30 330 34 HOH HOH . H 3 HOH C 31 331 61 HOH HOH . H 3 HOH C 32 332 49 HOH HOH . H 3 HOH C 33 333 66 HOH HOH . H 3 HOH C 34 334 89 HOH HOH . H 3 HOH C 35 335 45 HOH HOH . H 3 HOH C 36 336 63 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.616 _atom_site.Cartn_y 2.944 _atom_site.Cartn_z 31.288 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 36.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #