data_6T75
#
_model_server_result.job_id            raoDsZ4ItdtCzIyWT3oV5w 
_model_server_result.datetime_utc      '2024-11-27 23:02:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t75 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":701}' 
#
_entry.id    6T75 
#
_exptl.entry_id    6T75 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              182.147 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-deoxy-2-fluoro-alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.977 
_cell.angle_beta          97.733 
_cell.angle_gamma         107.161 
_cell.entry_id            6T75 
_cell.length_a            70.155 
_cell.length_b            104.873 
_cell.length_c            171.627 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T75 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G,H,K,L,M,N,S,U,V 1 1 
B,E,F,I,J,O,P,Q,R,T,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OE1 GLU 288 AAA GLU 297 1_555 G C1 MAF . AAA MAF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 B OE1 GLU 288 DDD GLU 297 1_555 I C1 MAF . DDD MAF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? 
covale ? covale3 C OE1 GLU 288 CCC GLU 297 1_555 K C1 MAF . CCC MAF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? 
covale ? covale4 D OE1 GLU 288 BBB GLU 297 1_555 M C1 MAF . BBB MAF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale5 E OE1 GLU 288 FFF GLU 297 1_555 O C1 MAF . FFF MAF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale6 F OE1 GLU 288 EEE GLU 297 1_555 Q C1 MAF . EEE MAF 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
#
_chem_comp.formula           'C6 H11 F O5' 
_chem_comp.formula_weight    182.147 
_chem_comp.id                MAF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-deoxy-2-fluoro-alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     2-DEOXY-2-FLUORO-ALPHA-D-MANNOSE;2-deoxy-2-fluoro-D-mannose;2-deoxy-2-fluoro-mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAF sing 218 n n 
C1 O5 MAF sing 219 n n 
C1 O1 MAF sing 220 n n 
C1 H1 MAF sing 221 n n 
C2 F2 MAF sing 222 n n 
C2 C3 MAF sing 223 n n 
C2 H2 MAF sing 224 n n 
C3 O3 MAF sing 225 n n 
C3 C4 MAF sing 226 n n 
C3 H3 MAF sing 227 n n 
O3 HO3 MAF sing 228 n n 
C4 O4 MAF sing 229 n n 
C4 C5 MAF sing 230 n n 
C4 H4 MAF sing 231 n n 
O4 HO4 MAF sing 232 n n 
C5 O5 MAF sing 233 n n 
C5 C6 MAF sing 234 n n 
C5 H5 MAF sing 235 n n 
C6 O6 MAF sing 236 n n 
C6 H61 MAF sing 237 n n 
C6 H62 MAF sing 238 n n 
O6 HO6 MAF sing 239 n n 
O1 HO1 MAF sing 240 n n 
#
_pdbx_chem_comp_identifier.comp_id            MAF 
_pdbx_chem_comp_identifier.identifier         a-D-Manp2fluoro 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6T75 
_atom_sites.fract_transf_matrix[1][1]    0.014254 
_atom_sites.fract_transf_matrix[1][2]    0.004402 
_atom_sites.fract_transf_matrix[1][3]    0.002288 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00998 
_atom_sites.fract_transf_matrix[2][3]    0.000785 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 MAF AAA 1 701 701 MAF 2FM . 
H 3 CL AAA 1 702 2 CL CL . 
I 2 MAF DDD 1 701 701 MAF 2FM . 
J 3 CL DDD 1 702 3 CL CL . 
K 2 MAF CCC 1 701 701 MAF 2FM . 
L 3 CL CCC 1 702 4 CL CL . 
M 2 MAF BBB 1 701 701 MAF 2FM . 
N 3 CL BBB 1 702 5 CL CL . 
O 2 MAF FFF 1 701 701 MAF 2FM . 
P 3 CL FFF 1 702 6 CL CL . 
Q 2 MAF EEE 1 701 701 MAF 2FM . 
R 3 CL EEE 1 702 1 CL CL . 
S 4 HOH AAA 1 801 175 HOH HOH . 
S 4 HOH AAA 2 802 43 HOH HOH . 
S 4 HOH AAA 3 803 171 HOH HOH . 
S 4 HOH AAA 4 804 54 HOH HOH . 
S 4 HOH AAA 5 805 108 HOH HOH . 
S 4 HOH AAA 6 806 3 HOH HOH . 
S 4 HOH AAA 7 807 93 HOH HOH . 
S 4 HOH AAA 8 808 85 HOH HOH . 
S 4 HOH AAA 9 809 95 HOH HOH . 
S 4 HOH AAA 10 810 177 HOH HOH . 
S 4 HOH AAA 11 811 101 HOH HOH . 
S 4 HOH AAA 12 812 161 HOH HOH . 
S 4 HOH AAA 13 813 53 HOH HOH . 
S 4 HOH AAA 14 814 146 HOH HOH . 
S 4 HOH AAA 15 815 86 HOH HOH . 
S 4 HOH AAA 16 816 190 HOH HOH . 
S 4 HOH AAA 17 817 34 HOH HOH . 
S 4 HOH AAA 18 818 119 HOH HOH . 
S 4 HOH AAA 19 819 77 HOH HOH . 
S 4 HOH AAA 20 820 38 HOH HOH . 
S 4 HOH AAA 21 821 67 HOH HOH . 
S 4 HOH AAA 22 822 191 HOH HOH . 
S 4 HOH AAA 23 823 94 HOH HOH . 
S 4 HOH AAA 24 824 126 HOH HOH . 
S 4 HOH AAA 25 825 130 HOH HOH . 
S 4 HOH AAA 26 826 1 HOH HOH . 
S 4 HOH AAA 27 827 24 HOH HOH . 
S 4 HOH AAA 28 828 102 HOH HOH . 
S 4 HOH AAA 29 829 65 HOH HOH . 
S 4 HOH AAA 30 830 104 HOH HOH . 
S 4 HOH AAA 31 831 40 HOH HOH . 
T 4 HOH DDD 1 801 75 HOH HOH . 
T 4 HOH DDD 2 802 16 HOH HOH . 
T 4 HOH DDD 3 803 37 HOH HOH . 
T 4 HOH DDD 4 804 30 HOH HOH . 
T 4 HOH DDD 5 805 122 HOH HOH . 
T 4 HOH DDD 6 806 131 HOH HOH . 
T 4 HOH DDD 7 807 164 HOH HOH . 
T 4 HOH DDD 8 808 155 HOH HOH . 
T 4 HOH DDD 9 809 141 HOH HOH . 
T 4 HOH DDD 10 810 90 HOH HOH . 
T 4 HOH DDD 11 811 31 HOH HOH . 
T 4 HOH DDD 12 812 184 HOH HOH . 
T 4 HOH DDD 13 813 105 HOH HOH . 
U 4 HOH CCC 1 801 178 HOH HOH . 
U 4 HOH CCC 2 802 39 HOH HOH . 
U 4 HOH CCC 3 803 111 HOH HOH . 
U 4 HOH CCC 4 804 73 HOH HOH . 
U 4 HOH CCC 5 805 106 HOH HOH . 
U 4 HOH CCC 6 806 15 HOH HOH . 
U 4 HOH CCC 7 807 22 HOH HOH . 
U 4 HOH CCC 8 808 21 HOH HOH . 
U 4 HOH CCC 9 809 76 HOH HOH . 
U 4 HOH CCC 10 810 174 HOH HOH . 
U 4 HOH CCC 11 811 47 HOH HOH . 
U 4 HOH CCC 12 812 196 HOH HOH . 
U 4 HOH CCC 13 813 120 HOH HOH . 
U 4 HOH CCC 14 814 162 HOH HOH . 
U 4 HOH CCC 15 815 88 HOH HOH . 
U 4 HOH CCC 16 816 152 HOH HOH . 
U 4 HOH CCC 17 817 133 HOH HOH . 
U 4 HOH CCC 18 818 58 HOH HOH . 
U 4 HOH CCC 19 819 168 HOH HOH . 
U 4 HOH CCC 20 820 117 HOH HOH . 
U 4 HOH CCC 21 821 151 HOH HOH . 
U 4 HOH CCC 22 822 166 HOH HOH . 
U 4 HOH CCC 23 823 156 HOH HOH . 
U 4 HOH CCC 24 824 124 HOH HOH . 
U 4 HOH CCC 25 825 17 HOH HOH . 
V 4 HOH BBB 1 801 127 HOH HOH . 
V 4 HOH BBB 2 802 185 HOH HOH . 
V 4 HOH BBB 3 803 160 HOH HOH . 
V 4 HOH BBB 4 804 28 HOH HOH . 
V 4 HOH BBB 5 805 182 HOH HOH . 
V 4 HOH BBB 6 806 50 HOH HOH . 
V 4 HOH BBB 7 807 20 HOH HOH . 
V 4 HOH BBB 8 808 14 HOH HOH . 
V 4 HOH BBB 9 809 192 HOH HOH . 
V 4 HOH BBB 10 810 89 HOH HOH . 
V 4 HOH BBB 11 811 103 HOH HOH . 
V 4 HOH BBB 12 812 149 HOH HOH . 
V 4 HOH BBB 13 813 150 HOH HOH . 
V 4 HOH BBB 14 814 176 HOH HOH . 
V 4 HOH BBB 15 815 195 HOH HOH . 
V 4 HOH BBB 16 816 52 HOH HOH . 
V 4 HOH BBB 17 817 179 HOH HOH . 
V 4 HOH BBB 18 818 165 HOH HOH . 
V 4 HOH BBB 19 819 172 HOH HOH . 
V 4 HOH BBB 20 820 41 HOH HOH . 
V 4 HOH BBB 21 821 173 HOH HOH . 
V 4 HOH BBB 22 822 56 HOH HOH . 
V 4 HOH BBB 23 823 116 HOH HOH . 
V 4 HOH BBB 24 824 18 HOH HOH . 
V 4 HOH BBB 25 825 26 HOH HOH . 
V 4 HOH BBB 26 826 121 HOH HOH . 
V 4 HOH BBB 27 827 128 HOH HOH . 
V 4 HOH BBB 28 828 147 HOH HOH . 
V 4 HOH BBB 29 829 68 HOH HOH . 
V 4 HOH BBB 30 830 72 HOH HOH . 
V 4 HOH BBB 31 831 91 HOH HOH . 
V 4 HOH BBB 32 832 19 HOH HOH . 
V 4 HOH BBB 33 833 9 HOH HOH . 
V 4 HOH BBB 34 834 7 HOH HOH . 
V 4 HOH BBB 35 835 123 HOH HOH . 
V 4 HOH BBB 36 836 157 HOH HOH . 
V 4 HOH BBB 37 837 134 HOH HOH . 
W 4 HOH FFF 1 801 64 HOH HOH . 
W 4 HOH FFF 2 802 23 HOH HOH . 
W 4 HOH FFF 3 803 167 HOH HOH . 
W 4 HOH FFF 4 804 60 HOH HOH . 
W 4 HOH FFF 5 805 180 HOH HOH . 
W 4 HOH FFF 6 806 81 HOH HOH . 
W 4 HOH FFF 7 807 138 HOH HOH . 
W 4 HOH FFF 8 808 51 HOH HOH . 
W 4 HOH FFF 9 809 69 HOH HOH . 
W 4 HOH FFF 10 810 96 HOH HOH . 
W 4 HOH FFF 11 811 25 HOH HOH . 
W 4 HOH FFF 12 812 144 HOH HOH . 
W 4 HOH FFF 13 813 197 HOH HOH . 
W 4 HOH FFF 14 814 181 HOH HOH . 
W 4 HOH FFF 15 815 115 HOH HOH . 
W 4 HOH FFF 16 816 29 HOH HOH . 
W 4 HOH FFF 17 817 71 HOH HOH . 
W 4 HOH FFF 18 818 35 HOH HOH . 
W 4 HOH FFF 19 819 129 HOH HOH . 
W 4 HOH FFF 20 820 183 HOH HOH . 
W 4 HOH FFF 21 821 63 HOH HOH . 
W 4 HOH FFF 22 822 158 HOH HOH . 
W 4 HOH FFF 23 823 70 HOH HOH . 
W 4 HOH FFF 24 824 87 HOH HOH . 
W 4 HOH FFF 25 825 27 HOH HOH . 
W 4 HOH FFF 26 826 80 HOH HOH . 
W 4 HOH FFF 27 827 61 HOH HOH . 
X 4 HOH EEE 1 801 100 HOH HOH . 
X 4 HOH EEE 2 802 188 HOH HOH . 
X 4 HOH EEE 3 803 193 HOH HOH . 
X 4 HOH EEE 4 804 11 HOH HOH . 
X 4 HOH EEE 5 805 49 HOH HOH . 
X 4 HOH EEE 6 806 142 HOH HOH . 
X 4 HOH EEE 7 807 45 HOH HOH . 
X 4 HOH EEE 8 808 153 HOH HOH . 
X 4 HOH EEE 9 809 46 HOH HOH . 
X 4 HOH EEE 10 810 143 HOH HOH . 
X 4 HOH EEE 11 811 187 HOH HOH . 
X 4 HOH EEE 12 812 159 HOH HOH . 
X 4 HOH EEE 13 813 57 HOH HOH . 
X 4 HOH EEE 14 814 125 HOH HOH . 
X 4 HOH EEE 15 815 74 HOH HOH . 
X 4 HOH EEE 16 816 55 HOH HOH . 
X 4 HOH EEE 17 817 194 HOH HOH . 
X 4 HOH EEE 18 818 163 HOH HOH . 
X 4 HOH EEE 19 819 139 HOH HOH . 
X 4 HOH EEE 20 820 78 HOH HOH . 
X 4 HOH EEE 21 821 118 HOH HOH . 
X 4 HOH EEE 22 822 99 HOH HOH . 
X 4 HOH EEE 23 823 135 HOH HOH . 
X 4 HOH EEE 24 824 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAF . . . Q 2 47.552 33.737 -89.248 1 58.79 ? C1 MAF 701 EEE 1 
HETATM 2 C C2 MAF . . . Q 2 46.07 34.085 -88.985 1 60.88 ? C2 MAF 701 EEE 1 
HETATM 3 F F2 MAF . . . Q 2 45.536 33.199 -88.072 1 69.03 ? F2 MAF 701 EEE 1 
HETATM 4 C C3 MAF . . . Q 2 45.735 35.466 -88.435 1 57.81 ? C3 MAF 701 EEE 1 
HETATM 5 O O3 MAF . . . Q 2 44.7 35.262 -87.436 1 54.87 ? O3 MAF 701 EEE 1 
HETATM 6 C C4 MAF . . . Q 2 46.951 36.255 -87.927 1 55.85 ? C4 MAF 701 EEE 1 
HETATM 7 O O4 MAF . . . Q 2 46.586 37.637 -88.062 1 57.18 ? O4 MAF 701 EEE 1 
HETATM 8 C C5 MAF . . . Q 2 48.273 36 -88.665 1 54.53 ? C5 MAF 701 EEE 1 
HETATM 9 O O5 MAF . . . Q 2 48.516 34.622 -88.644 1 57.13 ? O5 MAF 701 EEE 1 
HETATM 10 C C6 MAF . . . Q 2 49.535 36.578 -88.01 1 53.5 ? C6 MAF 701 EEE 1 
HETATM 11 O O6 MAF . . . Q 2 49.663 36.263 -86.595 1 51.69 ? O6 MAF 701 EEE 1 
HETATM 12 H H1 MAF . . . Q 2 47.727 32.752 -88.821 1 58.16 ? H1 MAF 701 EEE 1 
HETATM 13 H H2 MAF . . . Q 2 45.526 33.977 -89.934 1 61.44 ? H2 MAF 701 EEE 1 
HETATM 14 H H3 MAF . . . Q 2 45.303 36.036 -89.264 1 57.54 ? H3 MAF 701 EEE 1 
HETATM 15 H HO3 MAF . . . Q 2 44.449 36.126 -87.077 0 54.95 ? HO3 MAF 701 EEE 1 
HETATM 16 H H4 MAF . . . Q 2 47.091 36.017 -86.863 1 56.07 ? H4 MAF 701 EEE 1 
HETATM 17 H HO4 MAF . . . Q 2 47.33 38.169 -87.714 0 57.16 ? HO4 MAF 701 EEE 1 
HETATM 18 H H5 MAF . . . Q 2 48.196 36.362 -89.7 1 55.19 ? H5 MAF 701 EEE 1 
HETATM 19 H H61 MAF . . . Q 2 49.535 37.662 -88.134 1 53.41 ? H61 MAF 701 EEE 1 
HETATM 20 H H62 MAF . . . Q 2 50.411 36.193 -88.535 1 53.27 ? H62 MAF 701 EEE 1 
HETATM 21 H HO6 MAF . . . Q 2 50.474 36.66 -86.252 0 51.71 ? HO6 MAF 701 EEE 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    64 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#