data_6T77 # _model_server_result.job_id 8PSguGwbOgSxVjCrdiiUFQ _model_server_result.datetime_utc '2024-11-27 05:14:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6T77 # _exptl.entry_id 6T77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ;In chain A it is partialy disordered, and only the Pho-Adenine nucleotide segment is resolved in the electron density map. ; _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T77 _cell.length_a 68.723 _cell.length_b 118.842 _cell.length_c 119.759 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -59.8795 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 6T77 _atom_sites.fract_transf_matrix[1][1] 0.014551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 250 NAP NAP . D 2 NAP B 1 301 250 NAP NAP . E 3 HOH A 1 401 98 HOH HOH . E 3 HOH A 2 402 36 HOH HOH . E 3 HOH A 3 403 172 HOH HOH . E 3 HOH A 4 404 123 HOH HOH . E 3 HOH A 5 405 154 HOH HOH . E 3 HOH A 6 406 119 HOH HOH . E 3 HOH A 7 407 43 HOH HOH . E 3 HOH A 8 408 6 HOH HOH . E 3 HOH A 9 409 204 HOH HOH . E 3 HOH A 10 410 189 HOH HOH . E 3 HOH A 11 411 109 HOH HOH . E 3 HOH A 12 412 197 HOH HOH . E 3 HOH A 13 413 77 HOH HOH . E 3 HOH A 14 414 177 HOH HOH . E 3 HOH A 15 415 202 HOH HOH . E 3 HOH A 16 416 141 HOH HOH . E 3 HOH A 17 417 214 HOH HOH . E 3 HOH A 18 418 167 HOH HOH . E 3 HOH A 19 419 63 HOH HOH . E 3 HOH A 20 420 7 HOH HOH . E 3 HOH A 21 421 19 HOH HOH . E 3 HOH A 22 422 35 HOH HOH . E 3 HOH A 23 423 187 HOH HOH . E 3 HOH A 24 424 69 HOH HOH . E 3 HOH A 25 425 103 HOH HOH . E 3 HOH A 26 426 130 HOH HOH . E 3 HOH A 27 427 4 HOH HOH . E 3 HOH A 28 428 55 HOH HOH . E 3 HOH A 29 429 33 HOH HOH . E 3 HOH A 30 430 120 HOH HOH . E 3 HOH A 31 431 183 HOH HOH . E 3 HOH A 32 432 5 HOH HOH . E 3 HOH A 33 433 163 HOH HOH . E 3 HOH A 34 434 38 HOH HOH . E 3 HOH A 35 435 107 HOH HOH . E 3 HOH A 36 436 164 HOH HOH . E 3 HOH A 37 437 190 HOH HOH . E 3 HOH A 38 438 179 HOH HOH . E 3 HOH A 39 439 22 HOH HOH . E 3 HOH A 40 440 41 HOH HOH . E 3 HOH A 41 441 76 HOH HOH . E 3 HOH A 42 442 82 HOH HOH . E 3 HOH A 43 443 42 HOH HOH . E 3 HOH A 44 444 53 HOH HOH . E 3 HOH A 45 445 196 HOH HOH . E 3 HOH A 46 446 32 HOH HOH . E 3 HOH A 47 447 74 HOH HOH . E 3 HOH A 48 448 62 HOH HOH . E 3 HOH A 49 449 89 HOH HOH . E 3 HOH A 50 450 151 HOH HOH . E 3 HOH A 51 451 169 HOH HOH . E 3 HOH A 52 452 174 HOH HOH . E 3 HOH A 53 453 166 HOH HOH . E 3 HOH A 54 454 193 HOH HOH . E 3 HOH A 55 455 152 HOH HOH . E 3 HOH A 56 456 81 HOH HOH . E 3 HOH A 57 457 133 HOH HOH . E 3 HOH A 58 458 75 HOH HOH . E 3 HOH A 59 459 88 HOH HOH . E 3 HOH A 60 460 78 HOH HOH . E 3 HOH A 61 461 45 HOH HOH . E 3 HOH A 62 462 87 HOH HOH . E 3 HOH A 63 463 20 HOH HOH . E 3 HOH A 64 464 23 HOH HOH . E 3 HOH A 65 465 131 HOH HOH . E 3 HOH A 66 466 170 HOH HOH . E 3 HOH A 67 467 191 HOH HOH . E 3 HOH A 68 468 80 HOH HOH . E 3 HOH A 69 469 126 HOH HOH . E 3 HOH A 70 470 48 HOH HOH . E 3 HOH A 71 471 40 HOH HOH . E 3 HOH A 72 472 12 HOH HOH . E 3 HOH A 73 473 93 HOH HOH . E 3 HOH A 74 474 96 HOH HOH . E 3 HOH A 75 475 140 HOH HOH . E 3 HOH A 76 476 145 HOH HOH . E 3 HOH A 77 477 83 HOH HOH . E 3 HOH A 78 478 144 HOH HOH . E 3 HOH A 79 479 64 HOH HOH . E 3 HOH A 80 480 142 HOH HOH . E 3 HOH A 81 481 31 HOH HOH . E 3 HOH A 82 482 21 HOH HOH . E 3 HOH A 83 483 127 HOH HOH . E 3 HOH A 84 484 153 HOH HOH . E 3 HOH A 85 485 195 HOH HOH . E 3 HOH A 86 486 150 HOH HOH . E 3 HOH A 87 487 13 HOH HOH . E 3 HOH A 88 488 18 HOH HOH . E 3 HOH A 89 489 72 HOH HOH . E 3 HOH A 90 490 118 HOH HOH . E 3 HOH A 91 491 58 HOH HOH . E 3 HOH A 92 492 182 HOH HOH . E 3 HOH A 93 493 121 HOH HOH . E 3 HOH A 94 494 173 HOH HOH . E 3 HOH A 95 495 95 HOH HOH . E 3 HOH A 96 496 215 HOH HOH . E 3 HOH A 97 497 168 HOH HOH . E 3 HOH A 98 498 135 HOH HOH . E 3 HOH A 99 499 194 HOH HOH . E 3 HOH A 100 500 104 HOH HOH . E 3 HOH A 101 501 125 HOH HOH . E 3 HOH A 102 502 178 HOH HOH . E 3 HOH A 103 503 108 HOH HOH . E 3 HOH A 104 504 198 HOH HOH . E 3 HOH A 105 505 188 HOH HOH . E 3 HOH A 106 506 201 HOH HOH . E 3 HOH A 107 507 171 HOH HOH . E 3 HOH A 108 508 137 HOH HOH . E 3 HOH A 109 509 134 HOH HOH . E 3 HOH A 110 510 139 HOH HOH . E 3 HOH A 111 511 143 HOH HOH . F 3 HOH B 1 401 27 HOH HOH . F 3 HOH B 2 402 28 HOH HOH . F 3 HOH B 3 403 94 HOH HOH . F 3 HOH B 4 404 157 HOH HOH . F 3 HOH B 5 405 203 HOH HOH . F 3 HOH B 6 406 105 HOH HOH . F 3 HOH B 7 407 156 HOH HOH . F 3 HOH B 8 408 90 HOH HOH . F 3 HOH B 9 409 147 HOH HOH . F 3 HOH B 10 410 207 HOH HOH . F 3 HOH B 11 411 16 HOH HOH . F 3 HOH B 12 412 71 HOH HOH . F 3 HOH B 13 413 61 HOH HOH . F 3 HOH B 14 414 52 HOH HOH . F 3 HOH B 15 415 200 HOH HOH . F 3 HOH B 16 416 205 HOH HOH . F 3 HOH B 17 417 112 HOH HOH . F 3 HOH B 18 418 66 HOH HOH . F 3 HOH B 19 419 3 HOH HOH . F 3 HOH B 20 420 59 HOH HOH . F 3 HOH B 21 421 180 HOH HOH . F 3 HOH B 22 422 199 HOH HOH . F 3 HOH B 23 423 208 HOH HOH . F 3 HOH B 24 424 50 HOH HOH . F 3 HOH B 25 425 25 HOH HOH . F 3 HOH B 26 426 159 HOH HOH . F 3 HOH B 27 427 99 HOH HOH . F 3 HOH B 28 428 67 HOH HOH . F 3 HOH B 29 429 84 HOH HOH . F 3 HOH B 30 430 158 HOH HOH . F 3 HOH B 31 431 106 HOH HOH . F 3 HOH B 32 432 148 HOH HOH . F 3 HOH B 33 433 65 HOH HOH . F 3 HOH B 34 434 47 HOH HOH . F 3 HOH B 35 435 37 HOH HOH . F 3 HOH B 36 436 24 HOH HOH . F 3 HOH B 37 437 26 HOH HOH . F 3 HOH B 38 438 44 HOH HOH . F 3 HOH B 39 439 70 HOH HOH . F 3 HOH B 40 440 210 HOH HOH . F 3 HOH B 41 441 51 HOH HOH . F 3 HOH B 42 442 122 HOH HOH . F 3 HOH B 43 443 132 HOH HOH . F 3 HOH B 44 444 117 HOH HOH . F 3 HOH B 45 445 1 HOH HOH . F 3 HOH B 46 446 17 HOH HOH . F 3 HOH B 47 447 46 HOH HOH . F 3 HOH B 48 448 79 HOH HOH . F 3 HOH B 49 449 29 HOH HOH . F 3 HOH B 50 450 176 HOH HOH . F 3 HOH B 51 451 54 HOH HOH . F 3 HOH B 52 452 10 HOH HOH . F 3 HOH B 53 453 92 HOH HOH . F 3 HOH B 54 454 2 HOH HOH . F 3 HOH B 55 455 85 HOH HOH . F 3 HOH B 56 456 206 HOH HOH . F 3 HOH B 57 457 110 HOH HOH . F 3 HOH B 58 458 115 HOH HOH . F 3 HOH B 59 459 213 HOH HOH . F 3 HOH B 60 460 56 HOH HOH . F 3 HOH B 61 461 185 HOH HOH . F 3 HOH B 62 462 91 HOH HOH . F 3 HOH B 63 463 111 HOH HOH . F 3 HOH B 64 464 9 HOH HOH . F 3 HOH B 65 465 15 HOH HOH . F 3 HOH B 66 466 129 HOH HOH . F 3 HOH B 67 467 102 HOH HOH . F 3 HOH B 68 468 155 HOH HOH . F 3 HOH B 69 469 162 HOH HOH . F 3 HOH B 70 470 30 HOH HOH . F 3 HOH B 71 471 216 HOH HOH . F 3 HOH B 72 472 11 HOH HOH . F 3 HOH B 73 473 175 HOH HOH . F 3 HOH B 74 474 8 HOH HOH . F 3 HOH B 75 475 86 HOH HOH . F 3 HOH B 76 476 14 HOH HOH . F 3 HOH B 77 477 160 HOH HOH . F 3 HOH B 78 478 73 HOH HOH . F 3 HOH B 79 479 39 HOH HOH . F 3 HOH B 80 480 34 HOH HOH . F 3 HOH B 81 481 68 HOH HOH . F 3 HOH B 82 482 57 HOH HOH . F 3 HOH B 83 483 113 HOH HOH . F 3 HOH B 84 484 184 HOH HOH . F 3 HOH B 85 485 49 HOH HOH . F 3 HOH B 86 486 100 HOH HOH . F 3 HOH B 87 487 128 HOH HOH . F 3 HOH B 88 488 138 HOH HOH . F 3 HOH B 89 489 165 HOH HOH . F 3 HOH B 90 490 60 HOH HOH . F 3 HOH B 91 491 116 HOH HOH . F 3 HOH B 92 492 217 HOH HOH . F 3 HOH B 93 493 212 HOH HOH . F 3 HOH B 94 494 97 HOH HOH . F 3 HOH B 95 495 114 HOH HOH . F 3 HOH B 96 496 186 HOH HOH . F 3 HOH B 97 497 161 HOH HOH . F 3 HOH B 98 498 124 HOH HOH . F 3 HOH B 99 499 101 HOH HOH . F 3 HOH B 100 500 211 HOH HOH . F 3 HOH B 101 501 136 HOH HOH . F 3 HOH B 102 502 209 HOH HOH . F 3 HOH B 103 503 149 HOH HOH . F 3 HOH B 104 504 181 HOH HOH . F 3 HOH B 105 505 192 HOH HOH . F 3 HOH B 106 506 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 -22.445 -20.191 -25.942 1 75.53 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . C 2 -21.103 -19.698 -26.769 1 72.17 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . C 2 -22.863 -21.643 -26.196 1 64.6 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . C 2 -21.693 -20.162 -24.5 1 62.81 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . C 2 -22.364 -19.846 -23.302 1 51.9 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . C 2 -21.973 -20.883 -22.255 1 48.1 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . C 2 -21.644 -20.169 -21.049 1 43.13 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . C 2 -23.136 -21.825 -21.996 1 45.48 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . C 2 -22.654 -23.147 -21.718 1 45.72 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . C 2 -23.797 -21.191 -20.81 1 43.42 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . C 2 -24.495 -22.161 -20.059 1 44.65 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . C 2 -22.579 -20.65 -20.062 1 42.86 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . C 2 -23.011 -19.569 -19.157 1 43.52 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . C 2 -23.747 -18.449 -19.43 1 43.63 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . C 2 -23.957 -17.741 -18.293 1 43.26 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . C 2 -23.391 -18.43 -17.286 1 41.84 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . C 2 -23.28 -18.26 -15.832 1 41.02 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . C 2 -23.807 -17.177 -15.242 1 40.04 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . C 2 -22.567 -19.194 -15.155 1 39.59 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . C 2 -22.041 -20.275 -15.757 1 39.94 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . C 2 -22.125 -20.522 -17.092 1 39.73 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . C 2 -22.774 -19.629 -17.855 1 41.24 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . C 2 -23.462 -19.07 -26.04 1 76.89 ? O3 NAP 301 A 1 HETATM 24 P P2B NAP . . . C 2 -25.841 -22.831 -20.584 1 47.05 ? P2B NAP 301 A 1 HETATM 25 O O1X NAP . . . C 2 -26.458 -21.804 -21.458 1 51.18 ? O1X NAP 301 A 1 HETATM 26 O O2X NAP . . . C 2 -25.349 -23.994 -21.415 1 53.38 ? O2X NAP 301 A 1 HETATM 27 O O3X NAP . . . C 2 -26.533 -23.3 -19.382 1 45.78 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #