data_6T7H # _model_server_result.job_id UT1qAtN4xcdLJtVV_W67rA _model_server_result.datetime_utc '2025-01-10 08:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":604}' # _entry.id 6T7H # _exptl.entry_id 6T7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T7H _cell.length_a 64.664 _cell.length_b 101.343 _cell.length_c 119.129 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,N,O 1 1 C,D,J,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? disulf ? disulf5 C SG CYS 9 L CYS 1 1_555 D SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf6 D SG CYS 28 H CYS 42 1_555 D SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf7 D SG CYS 173 H CYS 168 1_555 D SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf8 D SG CYS 201 H CYS 191 1_555 D SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 E C1 NAG . B NAG 701 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 D ND2 ASN 53 H ASN 60 1_555 J C1 NAG . H NAG 601 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 B O ARG 233 B ARG 221 1_555 I NA NA . B NA 705 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 B O LYS 236 B LYS 224 1_555 I NA NA . B NA 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc3 I NA NA . B NA 705 1_555 O O HOH . B HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc4 I NA NA . B NA 705 1_555 O O HOH . B HOH 826 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc5 I NA NA . B NA 705 1_555 O O HOH . B HOH 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc6 I NA NA . B NA 705 1_555 O O HOH . B HOH 852 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 D O ARG 233 H ARG 221 1_555 M NA NA . H NA 604 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc8 D O LYS 236 H LYS 224 1_555 M NA NA . H NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc9 M NA NA . H NA 604 1_555 Q O HOH . H HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc10 M NA NA . H NA 604 1_555 Q O HOH . H HOH 747 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc11 M NA NA . H NA 604 1_555 Q O HOH . H HOH 754 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc12 M NA NA . H NA 604 1_555 Q O HOH . H HOH 759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T7H _atom_sites.fract_transf_matrix[1][1] 0.015465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG B 1 701 701 NAG NAG . F 4 EDO B 1 702 901 EDO EDO . G 4 EDO B 1 703 1001 EDO EDO . H 5 MRQ B 1 704 301 MRQ CRG . I 6 NA B 1 705 1 NA NA . J 3 NAG H 1 601 601 NAG NAG . K 4 EDO H 1 602 801 EDO EDO . L 5 MRQ H 1 603 301 MRQ CRG . M 6 NA H 1 604 2 NA NA . N 7 HOH A 1 101 146 HOH HOH . N 7 HOH A 2 102 96 HOH HOH . N 7 HOH A 3 103 34 HOH HOH . N 7 HOH A 4 104 138 HOH HOH . N 7 HOH A 5 105 93 HOH HOH . N 7 HOH A 6 106 85 HOH HOH . N 7 HOH A 7 107 158 HOH HOH . N 7 HOH A 8 108 35 HOH HOH . N 7 HOH A 9 109 151 HOH HOH . O 7 HOH B 1 801 32 HOH HOH . O 7 HOH B 2 802 76 HOH HOH . O 7 HOH B 3 803 19 HOH HOH . O 7 HOH B 4 804 82 HOH HOH . O 7 HOH B 5 805 148 HOH HOH . O 7 HOH B 6 806 144 HOH HOH . O 7 HOH B 7 807 123 HOH HOH . O 7 HOH B 8 808 89 HOH HOH . O 7 HOH B 9 809 99 HOH HOH . O 7 HOH B 10 810 55 HOH HOH . O 7 HOH B 11 811 15 HOH HOH . O 7 HOH B 12 812 6 HOH HOH . O 7 HOH B 13 813 27 HOH HOH . O 7 HOH B 14 814 88 HOH HOH . O 7 HOH B 15 815 115 HOH HOH . O 7 HOH B 16 816 49 HOH HOH . O 7 HOH B 17 817 87 HOH HOH . O 7 HOH B 18 818 74 HOH HOH . O 7 HOH B 19 819 41 HOH HOH . O 7 HOH B 20 820 137 HOH HOH . O 7 HOH B 21 821 13 HOH HOH . O 7 HOH B 22 822 105 HOH HOH . O 7 HOH B 23 823 17 HOH HOH . O 7 HOH B 24 824 100 HOH HOH . O 7 HOH B 25 825 170 HOH HOH . O 7 HOH B 26 826 4 HOH HOH . O 7 HOH B 27 827 29 HOH HOH . O 7 HOH B 28 828 25 HOH HOH . O 7 HOH B 29 829 31 HOH HOH . O 7 HOH B 30 830 86 HOH HOH . O 7 HOH B 31 831 56 HOH HOH . O 7 HOH B 32 832 53 HOH HOH . O 7 HOH B 33 833 67 HOH HOH . O 7 HOH B 34 834 36 HOH HOH . O 7 HOH B 35 835 16 HOH HOH . O 7 HOH B 36 836 78 HOH HOH . O 7 HOH B 37 837 139 HOH HOH . O 7 HOH B 38 838 48 HOH HOH . O 7 HOH B 39 839 77 HOH HOH . O 7 HOH B 40 840 60 HOH HOH . O 7 HOH B 41 841 119 HOH HOH . O 7 HOH B 42 842 50 HOH HOH . O 7 HOH B 43 843 1 HOH HOH . O 7 HOH B 44 844 152 HOH HOH . O 7 HOH B 45 845 3 HOH HOH . O 7 HOH B 46 846 26 HOH HOH . O 7 HOH B 47 847 30 HOH HOH . O 7 HOH B 48 848 143 HOH HOH . O 7 HOH B 49 849 163 HOH HOH . O 7 HOH B 50 850 91 HOH HOH . O 7 HOH B 51 851 150 HOH HOH . O 7 HOH B 52 852 5 HOH HOH . O 7 HOH B 53 853 69 HOH HOH . O 7 HOH B 54 854 135 HOH HOH . O 7 HOH B 55 855 81 HOH HOH . O 7 HOH B 56 856 95 HOH HOH . O 7 HOH B 57 857 42 HOH HOH . O 7 HOH B 58 858 39 HOH HOH . O 7 HOH B 59 859 106 HOH HOH . O 7 HOH B 60 860 169 HOH HOH . O 7 HOH B 61 861 142 HOH HOH . P 7 HOH L 1 101 116 HOH HOH . P 7 HOH L 2 102 73 HOH HOH . P 7 HOH L 3 103 84 HOH HOH . P 7 HOH L 4 104 161 HOH HOH . P 7 HOH L 5 105 63 HOH HOH . P 7 HOH L 6 106 162 HOH HOH . P 7 HOH L 7 107 125 HOH HOH . P 7 HOH L 8 108 75 HOH HOH . P 7 HOH L 9 109 20 HOH HOH . P 7 HOH L 10 110 165 HOH HOH . P 7 HOH L 11 111 64 HOH HOH . P 7 HOH L 12 112 83 HOH HOH . Q 7 HOH H 1 701 120 HOH HOH . Q 7 HOH H 2 702 114 HOH HOH . Q 7 HOH H 3 703 118 HOH HOH . Q 7 HOH H 4 704 155 HOH HOH . Q 7 HOH H 5 705 62 HOH HOH . Q 7 HOH H 6 706 23 HOH HOH . Q 7 HOH H 7 707 57 HOH HOH . Q 7 HOH H 8 708 109 HOH HOH . Q 7 HOH H 9 709 147 HOH HOH . Q 7 HOH H 10 710 72 HOH HOH . Q 7 HOH H 11 711 112 HOH HOH . Q 7 HOH H 12 712 103 HOH HOH . Q 7 HOH H 13 713 168 HOH HOH . Q 7 HOH H 14 714 37 HOH HOH . Q 7 HOH H 15 715 117 HOH HOH . Q 7 HOH H 16 716 101 HOH HOH . Q 7 HOH H 17 717 21 HOH HOH . Q 7 HOH H 18 718 43 HOH HOH . Q 7 HOH H 19 719 10 HOH HOH . Q 7 HOH H 20 720 46 HOH HOH . Q 7 HOH H 21 721 113 HOH HOH . Q 7 HOH H 22 722 134 HOH HOH . Q 7 HOH H 23 723 24 HOH HOH . Q 7 HOH H 24 724 61 HOH HOH . Q 7 HOH H 25 725 12 HOH HOH . Q 7 HOH H 26 726 127 HOH HOH . Q 7 HOH H 27 727 44 HOH HOH . Q 7 HOH H 28 728 40 HOH HOH . Q 7 HOH H 29 729 149 HOH HOH . Q 7 HOH H 30 730 51 HOH HOH . Q 7 HOH H 31 731 107 HOH HOH . Q 7 HOH H 32 732 92 HOH HOH . Q 7 HOH H 33 733 66 HOH HOH . Q 7 HOH H 34 734 111 HOH HOH . Q 7 HOH H 35 735 11 HOH HOH . Q 7 HOH H 36 736 28 HOH HOH . Q 7 HOH H 37 737 38 HOH HOH . Q 7 HOH H 38 738 33 HOH HOH . Q 7 HOH H 39 739 131 HOH HOH . Q 7 HOH H 40 740 52 HOH HOH . Q 7 HOH H 41 741 97 HOH HOH . Q 7 HOH H 42 742 124 HOH HOH . Q 7 HOH H 43 743 7 HOH HOH . Q 7 HOH H 44 744 80 HOH HOH . Q 7 HOH H 45 745 45 HOH HOH . Q 7 HOH H 46 746 132 HOH HOH . Q 7 HOH H 47 747 9 HOH HOH . Q 7 HOH H 48 748 110 HOH HOH . Q 7 HOH H 49 749 59 HOH HOH . Q 7 HOH H 50 750 68 HOH HOH . Q 7 HOH H 51 751 102 HOH HOH . Q 7 HOH H 52 752 18 HOH HOH . Q 7 HOH H 53 753 65 HOH HOH . Q 7 HOH H 54 754 108 HOH HOH . Q 7 HOH H 55 755 167 HOH HOH . Q 7 HOH H 56 756 156 HOH HOH . Q 7 HOH H 57 757 2 HOH HOH . Q 7 HOH H 58 758 130 HOH HOH . Q 7 HOH H 59 759 8 HOH HOH . Q 7 HOH H 60 760 79 HOH HOH . Q 7 HOH H 61 761 22 HOH HOH . Q 7 HOH H 62 762 71 HOH HOH . Q 7 HOH H 63 763 58 HOH HOH . Q 7 HOH H 64 764 70 HOH HOH . Q 7 HOH H 65 765 104 HOH HOH . Q 7 HOH H 66 766 166 HOH HOH . Q 7 HOH H 67 767 126 HOH HOH . Q 7 HOH H 68 768 129 HOH HOH . Q 7 HOH H 69 769 140 HOH HOH . Q 7 HOH H 70 770 121 HOH HOH . Q 7 HOH H 71 771 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 6 _atom_site.Cartn_x 3.129 _atom_site.Cartn_y -34.646 _atom_site.Cartn_z -21.89 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.13 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 604 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #