data_6T7P # _model_server_result.job_id u40QUsslrI07znHizMLr8Q _model_server_result.datetime_utc '2024-11-30 10:00:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 6T7P # _exptl.entry_id 6T7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T7P _cell.length_a 57.1 _cell.length_b 59.15 _cell.length_c 86.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A SG CYS 113 A CYS 122 1_555 B SG2 GSH . A GSH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 6T7P _atom_sites.fract_transf_matrix[1][1] 0.017513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 1 GSH GTT . C 3 DMS A 1 302 2 DMS DMS . D 3 DMS A 1 303 3 DMS DMS . E 3 DMS A 1 304 4 DMS DMS . F 3 DMS A 1 305 9 DMS DMS . G 3 DMS A 1 306 10 DMS DMS . H 3 DMS A 1 307 12 DMS DMS . I 3 DMS A 1 308 13 DMS DMS . J 3 DMS A 1 309 14 DMS DMS . K 3 DMS A 1 310 15 DMS DMS . L 3 DMS A 1 311 16 DMS DMS . M 4 PO4 A 1 312 17 PO4 PO4 . N 5 GOL A 1 313 18 GOL GOL . O 6 MU8 A 1 314 301 MU8 LI1 . P 7 HOH A 1 401 15 HOH HOH . P 7 HOH A 2 402 111 HOH HOH . P 7 HOH A 3 403 216 HOH HOH . P 7 HOH A 4 404 125 HOH HOH . P 7 HOH A 5 405 262 HOH HOH . P 7 HOH A 6 406 271 HOH HOH . P 7 HOH A 7 407 155 HOH HOH . P 7 HOH A 8 408 42 HOH HOH . P 7 HOH A 9 409 90 HOH HOH . P 7 HOH A 10 410 204 HOH HOH . P 7 HOH A 11 411 264 HOH HOH . P 7 HOH A 12 412 254 HOH HOH . P 7 HOH A 13 413 49 HOH HOH . P 7 HOH A 14 414 183 HOH HOH . P 7 HOH A 15 415 158 HOH HOH . P 7 HOH A 16 416 245 HOH HOH . P 7 HOH A 17 417 171 HOH HOH . P 7 HOH A 18 418 16 HOH HOH . P 7 HOH A 19 419 119 HOH HOH . P 7 HOH A 20 420 116 HOH HOH . P 7 HOH A 21 421 188 HOH HOH . P 7 HOH A 22 422 252 HOH HOH . P 7 HOH A 23 423 115 HOH HOH . P 7 HOH A 24 424 107 HOH HOH . P 7 HOH A 25 425 168 HOH HOH . P 7 HOH A 26 426 219 HOH HOH . P 7 HOH A 27 427 211 HOH HOH . P 7 HOH A 28 428 217 HOH HOH . P 7 HOH A 29 429 127 HOH HOH . P 7 HOH A 30 430 56 HOH HOH . P 7 HOH A 31 431 22 HOH HOH . P 7 HOH A 32 432 212 HOH HOH . P 7 HOH A 33 433 134 HOH HOH . P 7 HOH A 34 434 232 HOH HOH . P 7 HOH A 35 435 85 HOH HOH . P 7 HOH A 36 436 78 HOH HOH . P 7 HOH A 37 437 269 HOH HOH . P 7 HOH A 38 438 70 HOH HOH . P 7 HOH A 39 439 100 HOH HOH . P 7 HOH A 40 440 163 HOH HOH . P 7 HOH A 41 441 40 HOH HOH . P 7 HOH A 42 442 181 HOH HOH . P 7 HOH A 43 443 175 HOH HOH . P 7 HOH A 44 444 21 HOH HOH . P 7 HOH A 45 445 32 HOH HOH . P 7 HOH A 46 446 43 HOH HOH . P 7 HOH A 47 447 140 HOH HOH . P 7 HOH A 48 448 224 HOH HOH . P 7 HOH A 49 449 162 HOH HOH . P 7 HOH A 50 450 57 HOH HOH . P 7 HOH A 51 451 27 HOH HOH . P 7 HOH A 52 452 133 HOH HOH . P 7 HOH A 53 453 20 HOH HOH . P 7 HOH A 54 454 235 HOH HOH . P 7 HOH A 55 455 130 HOH HOH . P 7 HOH A 56 456 103 HOH HOH . P 7 HOH A 57 457 31 HOH HOH . P 7 HOH A 58 458 82 HOH HOH . P 7 HOH A 59 459 172 HOH HOH . P 7 HOH A 60 460 270 HOH HOH . P 7 HOH A 61 461 84 HOH HOH . P 7 HOH A 62 462 36 HOH HOH . P 7 HOH A 63 463 9 HOH HOH . P 7 HOH A 64 464 46 HOH HOH . P 7 HOH A 65 465 62 HOH HOH . P 7 HOH A 66 466 3 HOH HOH . P 7 HOH A 67 467 132 HOH HOH . P 7 HOH A 68 468 66 HOH HOH . P 7 HOH A 69 469 37 HOH HOH . P 7 HOH A 70 470 13 HOH HOH . P 7 HOH A 71 471 61 HOH HOH . P 7 HOH A 72 472 72 HOH HOH . P 7 HOH A 73 473 5 HOH HOH . P 7 HOH A 74 474 47 HOH HOH . P 7 HOH A 75 475 75 HOH HOH . P 7 HOH A 76 476 65 HOH HOH . P 7 HOH A 77 477 38 HOH HOH . P 7 HOH A 78 478 185 HOH HOH . P 7 HOH A 79 479 126 HOH HOH . P 7 HOH A 80 480 63 HOH HOH . P 7 HOH A 81 481 19 HOH HOH . P 7 HOH A 82 482 18 HOH HOH . P 7 HOH A 83 483 7 HOH HOH . P 7 HOH A 84 484 177 HOH HOH . P 7 HOH A 85 485 51 HOH HOH . P 7 HOH A 86 486 156 HOH HOH . P 7 HOH A 87 487 231 HOH HOH . P 7 HOH A 88 488 176 HOH HOH . P 7 HOH A 89 489 166 HOH HOH . P 7 HOH A 90 490 135 HOH HOH . P 7 HOH A 91 491 28 HOH HOH . P 7 HOH A 92 492 234 HOH HOH . P 7 HOH A 93 493 8 HOH HOH . P 7 HOH A 94 494 114 HOH HOH . P 7 HOH A 95 495 220 HOH HOH . P 7 HOH A 96 496 86 HOH HOH . P 7 HOH A 97 497 68 HOH HOH . P 7 HOH A 98 498 147 HOH HOH . P 7 HOH A 99 499 182 HOH HOH . P 7 HOH A 100 500 105 HOH HOH . P 7 HOH A 101 501 151 HOH HOH . P 7 HOH A 102 502 261 HOH HOH . P 7 HOH A 103 503 267 HOH HOH . P 7 HOH A 104 504 25 HOH HOH . P 7 HOH A 105 505 24 HOH HOH . P 7 HOH A 106 506 39 HOH HOH . P 7 HOH A 107 507 10 HOH HOH . P 7 HOH A 108 508 152 HOH HOH . P 7 HOH A 109 509 26 HOH HOH . P 7 HOH A 110 510 81 HOH HOH . P 7 HOH A 111 511 113 HOH HOH . P 7 HOH A 112 512 14 HOH HOH . P 7 HOH A 113 513 180 HOH HOH . P 7 HOH A 114 514 110 HOH HOH . P 7 HOH A 115 515 186 HOH HOH . P 7 HOH A 116 516 95 HOH HOH . P 7 HOH A 117 517 149 HOH HOH . P 7 HOH A 118 518 4 HOH HOH . P 7 HOH A 119 519 6 HOH HOH . P 7 HOH A 120 520 41 HOH HOH . P 7 HOH A 121 521 17 HOH HOH . P 7 HOH A 122 522 1 HOH HOH . P 7 HOH A 123 523 108 HOH HOH . P 7 HOH A 124 524 159 HOH HOH . P 7 HOH A 125 525 268 HOH HOH . P 7 HOH A 126 526 187 HOH HOH . P 7 HOH A 127 527 173 HOH HOH . P 7 HOH A 128 528 203 HOH HOH . P 7 HOH A 129 529 99 HOH HOH . P 7 HOH A 130 530 191 HOH HOH . P 7 HOH A 131 531 91 HOH HOH . P 7 HOH A 132 532 106 HOH HOH . P 7 HOH A 133 533 164 HOH HOH . P 7 HOH A 134 534 169 HOH HOH . P 7 HOH A 135 535 210 HOH HOH . P 7 HOH A 136 536 96 HOH HOH . P 7 HOH A 137 537 104 HOH HOH . P 7 HOH A 138 538 12 HOH HOH . P 7 HOH A 139 539 30 HOH HOH . P 7 HOH A 140 540 11 HOH HOH . P 7 HOH A 141 541 213 HOH HOH . P 7 HOH A 142 542 144 HOH HOH . P 7 HOH A 143 543 80 HOH HOH . P 7 HOH A 144 544 54 HOH HOH . P 7 HOH A 145 545 52 HOH HOH . P 7 HOH A 146 546 214 HOH HOH . P 7 HOH A 147 547 146 HOH HOH . P 7 HOH A 148 548 237 HOH HOH . P 7 HOH A 149 549 94 HOH HOH . P 7 HOH A 150 550 23 HOH HOH . P 7 HOH A 151 551 102 HOH HOH . P 7 HOH A 152 552 2 HOH HOH . P 7 HOH A 153 553 233 HOH HOH . P 7 HOH A 154 554 59 HOH HOH . P 7 HOH A 155 555 79 HOH HOH . P 7 HOH A 156 556 77 HOH HOH . P 7 HOH A 157 557 242 HOH HOH . P 7 HOH A 158 558 160 HOH HOH . P 7 HOH A 159 559 150 HOH HOH . P 7 HOH A 160 560 121 HOH HOH . P 7 HOH A 161 561 157 HOH HOH . P 7 HOH A 162 562 143 HOH HOH . P 7 HOH A 163 563 50 HOH HOH . P 7 HOH A 164 564 101 HOH HOH . P 7 HOH A 165 565 243 HOH HOH . P 7 HOH A 166 566 170 HOH HOH . P 7 HOH A 167 567 221 HOH HOH . P 7 HOH A 168 568 58 HOH HOH . P 7 HOH A 169 569 120 HOH HOH . P 7 HOH A 170 570 71 HOH HOH . P 7 HOH A 171 571 141 HOH HOH . P 7 HOH A 172 572 97 HOH HOH . P 7 HOH A 173 573 142 HOH HOH . P 7 HOH A 174 574 258 HOH HOH . P 7 HOH A 175 575 189 HOH HOH . P 7 HOH A 176 576 136 HOH HOH . P 7 HOH A 177 577 44 HOH HOH . P 7 HOH A 178 578 131 HOH HOH . P 7 HOH A 179 579 222 HOH HOH . P 7 HOH A 180 580 139 HOH HOH . P 7 HOH A 181 581 34 HOH HOH . P 7 HOH A 182 582 128 HOH HOH . P 7 HOH A 183 583 45 HOH HOH . P 7 HOH A 184 584 215 HOH HOH . P 7 HOH A 185 585 53 HOH HOH . P 7 HOH A 186 586 247 HOH HOH . P 7 HOH A 187 587 223 HOH HOH . P 7 HOH A 188 588 129 HOH HOH . P 7 HOH A 189 589 236 HOH HOH . P 7 HOH A 190 590 33 HOH HOH . P 7 HOH A 191 591 248 HOH HOH . P 7 HOH A 192 592 148 HOH HOH . P 7 HOH A 193 593 98 HOH HOH . P 7 HOH A 194 594 250 HOH HOH . P 7 HOH A 195 595 184 HOH HOH . P 7 HOH A 196 596 255 HOH HOH . P 7 HOH A 197 597 92 HOH HOH . P 7 HOH A 198 598 239 HOH HOH . P 7 HOH A 199 599 73 HOH HOH . P 7 HOH A 200 600 122 HOH HOH . P 7 HOH A 201 601 137 HOH HOH . P 7 HOH A 202 602 69 HOH HOH . P 7 HOH A 203 603 178 HOH HOH . P 7 HOH A 204 604 87 HOH HOH . P 7 HOH A 205 605 167 HOH HOH . P 7 HOH A 206 606 64 HOH HOH . P 7 HOH A 207 607 74 HOH HOH . P 7 HOH A 208 608 205 HOH HOH . P 7 HOH A 209 609 246 HOH HOH . P 7 HOH A 210 610 83 HOH HOH . P 7 HOH A 211 611 241 HOH HOH . P 7 HOH A 212 612 35 HOH HOH . P 7 HOH A 213 613 240 HOH HOH . P 7 HOH A 214 614 161 HOH HOH . P 7 HOH A 215 615 249 HOH HOH . P 7 HOH A 216 616 29 HOH HOH . P 7 HOH A 217 617 165 HOH HOH . P 7 HOH A 218 618 179 HOH HOH . P 7 HOH A 219 619 154 HOH HOH . P 7 HOH A 220 620 112 HOH HOH . P 7 HOH A 221 621 174 HOH HOH . P 7 HOH A 222 622 124 HOH HOH . P 7 HOH A 223 623 194 HOH HOH . P 7 HOH A 224 624 190 HOH HOH . P 7 HOH A 225 625 253 HOH HOH . P 7 HOH A 226 626 263 HOH HOH . P 7 HOH A 227 627 259 HOH HOH . P 7 HOH A 228 628 153 HOH HOH . P 7 HOH A 229 629 199 HOH HOH . P 7 HOH A 230 630 227 HOH HOH . P 7 HOH A 231 631 192 HOH HOH . P 7 HOH A 232 632 138 HOH HOH . P 7 HOH A 233 633 209 HOH HOH . P 7 HOH A 234 634 109 HOH HOH . P 7 HOH A 235 635 238 HOH HOH . P 7 HOH A 236 636 89 HOH HOH . P 7 HOH A 237 637 251 HOH HOH . P 7 HOH A 238 638 202 HOH HOH . P 7 HOH A 239 639 230 HOH HOH . P 7 HOH A 240 640 117 HOH HOH . P 7 HOH A 241 641 118 HOH HOH . P 7 HOH A 242 642 257 HOH HOH . P 7 HOH A 243 643 55 HOH HOH . P 7 HOH A 244 644 196 HOH HOH . P 7 HOH A 245 645 60 HOH HOH . P 7 HOH A 246 646 218 HOH HOH . P 7 HOH A 247 647 145 HOH HOH . P 7 HOH A 248 648 88 HOH HOH . P 7 HOH A 249 649 208 HOH HOH . P 7 HOH A 250 650 244 HOH HOH . P 7 HOH A 251 651 206 HOH HOH . P 7 HOH A 252 652 228 HOH HOH . P 7 HOH A 253 653 76 HOH HOH . P 7 HOH A 254 654 201 HOH HOH . P 7 HOH A 255 655 48 HOH HOH . P 7 HOH A 256 656 93 HOH HOH . P 7 HOH A 257 657 195 HOH HOH . P 7 HOH A 258 658 256 HOH HOH . P 7 HOH A 259 659 229 HOH HOH . P 7 HOH A 260 660 200 HOH HOH . P 7 HOH A 261 661 123 HOH HOH . P 7 HOH A 262 662 193 HOH HOH . P 7 HOH A 263 663 198 HOH HOH . P 7 HOH A 264 664 67 HOH HOH . P 7 HOH A 265 665 197 HOH HOH . P 7 HOH A 266 666 226 HOH HOH . P 7 HOH A 267 667 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 5 2.809 10.94 -0.395 1 77.33 ? C1 GOL 313 A 1 HETATM 2 O O1 GOL . . . N 5 2.198 11.304 0.793 1 81.22 ? O1 GOL 313 A 1 HETATM 3 C C2 GOL . . . N 5 3.416 12.234 -0.978 1 51.06 ? C2 GOL 313 A 1 HETATM 4 O O2 GOL . . . N 5 4.669 12.481 -0.501 1 29.71 ? O2 GOL 313 A 1 HETATM 5 C C3 GOL . . . N 5 3.411 12.005 -2.484 1 22.84 ? C3 GOL 313 A 1 HETATM 6 O O3 GOL . . . N 5 2.568 12.958 -3.014 1 29.84 ? O3 GOL 313 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 470 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #