data_6T86 # _model_server_result.job_id 7lnyj5VrVN8e1bsx_Mphlw _model_server_result.datetime_utc '2024-11-25 21:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6T86 # _exptl.entry_id 6T86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T86 _cell.length_a 159.786 _cell.length_b 159.786 _cell.length_c 75.491 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1,2,3,4 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 159.786 0 0 3 'crystal symmetry operation' 8_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 75.491 4 'crystal symmetry operation' 11_656 -x+y+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 159.786 0 75.491 5 'crystal symmetry operation' 12_556 x,x-y,-z+1 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 75.491 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 394 A THR 522 1_555 O NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A O MET 395 A MET 523 1_555 O NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc3 A O GLY 396 A GLY 524 1_555 O NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc4 A O GLU 422 A GLU 550 1_555 O NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 A O THR 424 A THR 552 1_555 O NA NA . A NA 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc6 O NA NA . A NA 614 1_555 P O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 6T86 _atom_sites.fract_transf_matrix[1][1] 0.006258 _atom_sites.fract_transf_matrix[1][2] 0.003613 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 601 FAD FAD . C 3 GOL A 1 602 701 GOL GOL . D 3 GOL A 1 603 801 GOL GOL . E 3 GOL A 1 604 901 GOL GOL . F 4 CL A 1 605 1 CL CL . G 4 CL A 1 606 2 CL CL . H 4 CL A 1 607 3 CL CL . I 5 SO4 A 1 608 1 SO4 SO4 . J 5 SO4 A 1 609 2 SO4 SO4 . K 5 SO4 A 1 610 3 SO4 SO4 . L 5 SO4 A 1 611 4 SO4 SO4 . M 5 SO4 A 1 612 5 SO4 SO4 . N 5 SO4 A 1 613 6 SO4 SO4 . O 6 NA A 1 614 1 NA NA . P 7 HOH A 1 701 203 HOH HOH . P 7 HOH A 2 702 14 HOH HOH . P 7 HOH A 3 703 37 HOH HOH . P 7 HOH A 4 704 178 HOH HOH . P 7 HOH A 5 705 85 HOH HOH . P 7 HOH A 6 706 8 HOH HOH . P 7 HOH A 7 707 125 HOH HOH . P 7 HOH A 8 708 101 HOH HOH . P 7 HOH A 9 709 127 HOH HOH . P 7 HOH A 10 710 135 HOH HOH . P 7 HOH A 11 711 106 HOH HOH . P 7 HOH A 12 712 109 HOH HOH . P 7 HOH A 13 713 202 HOH HOH . P 7 HOH A 14 714 103 HOH HOH . P 7 HOH A 15 715 105 HOH HOH . P 7 HOH A 16 716 66 HOH HOH . P 7 HOH A 17 717 54 HOH HOH . P 7 HOH A 18 718 212 HOH HOH . P 7 HOH A 19 719 55 HOH HOH . P 7 HOH A 20 720 129 HOH HOH . P 7 HOH A 21 721 44 HOH HOH . P 7 HOH A 22 722 200 HOH HOH . P 7 HOH A 23 723 69 HOH HOH . P 7 HOH A 24 724 136 HOH HOH . P 7 HOH A 25 725 10 HOH HOH . P 7 HOH A 26 726 5 HOH HOH . P 7 HOH A 27 727 49 HOH HOH . P 7 HOH A 28 728 63 HOH HOH . P 7 HOH A 29 729 206 HOH HOH . P 7 HOH A 30 730 22 HOH HOH . P 7 HOH A 31 731 27 HOH HOH . P 7 HOH A 32 732 65 HOH HOH . P 7 HOH A 33 733 52 HOH HOH . P 7 HOH A 34 734 11 HOH HOH . P 7 HOH A 35 735 98 HOH HOH . P 7 HOH A 36 736 20 HOH HOH . P 7 HOH A 37 737 128 HOH HOH . P 7 HOH A 38 738 25 HOH HOH . P 7 HOH A 39 739 6 HOH HOH . P 7 HOH A 40 740 50 HOH HOH . P 7 HOH A 41 741 7 HOH HOH . P 7 HOH A 42 742 113 HOH HOH . P 7 HOH A 43 743 4 HOH HOH . P 7 HOH A 44 744 18 HOH HOH . P 7 HOH A 45 745 47 HOH HOH . P 7 HOH A 46 746 17 HOH HOH . P 7 HOH A 47 747 97 HOH HOH . P 7 HOH A 48 748 154 HOH HOH . P 7 HOH A 49 749 62 HOH HOH . P 7 HOH A 50 750 1 HOH HOH . P 7 HOH A 51 751 26 HOH HOH . P 7 HOH A 52 752 172 HOH HOH . P 7 HOH A 53 753 104 HOH HOH . P 7 HOH A 54 754 35 HOH HOH . P 7 HOH A 55 755 16 HOH HOH . P 7 HOH A 56 756 126 HOH HOH . P 7 HOH A 57 757 13 HOH HOH . P 7 HOH A 58 758 110 HOH HOH . P 7 HOH A 59 759 42 HOH HOH . P 7 HOH A 60 760 41 HOH HOH . P 7 HOH A 61 761 23 HOH HOH . P 7 HOH A 62 762 48 HOH HOH . P 7 HOH A 63 763 60 HOH HOH . P 7 HOH A 64 764 94 HOH HOH . P 7 HOH A 65 765 141 HOH HOH . P 7 HOH A 66 766 70 HOH HOH . P 7 HOH A 67 767 114 HOH HOH . P 7 HOH A 68 768 51 HOH HOH . P 7 HOH A 69 769 91 HOH HOH . P 7 HOH A 70 770 43 HOH HOH . P 7 HOH A 71 771 30 HOH HOH . P 7 HOH A 72 772 134 HOH HOH . P 7 HOH A 73 773 93 HOH HOH . P 7 HOH A 74 774 159 HOH HOH . P 7 HOH A 75 775 73 HOH HOH . P 7 HOH A 76 776 57 HOH HOH . P 7 HOH A 77 777 33 HOH HOH . P 7 HOH A 78 778 80 HOH HOH . P 7 HOH A 79 779 28 HOH HOH . P 7 HOH A 80 780 155 HOH HOH . P 7 HOH A 81 781 95 HOH HOH . P 7 HOH A 82 782 29 HOH HOH . P 7 HOH A 83 783 58 HOH HOH . P 7 HOH A 84 784 102 HOH HOH . P 7 HOH A 85 785 185 HOH HOH . P 7 HOH A 86 786 77 HOH HOH . P 7 HOH A 87 787 147 HOH HOH . P 7 HOH A 88 788 72 HOH HOH . P 7 HOH A 89 789 74 HOH HOH . P 7 HOH A 90 790 12 HOH HOH . P 7 HOH A 91 791 78 HOH HOH . P 7 HOH A 92 792 166 HOH HOH . P 7 HOH A 93 793 100 HOH HOH . P 7 HOH A 94 794 15 HOH HOH . P 7 HOH A 95 795 176 HOH HOH . P 7 HOH A 96 796 24 HOH HOH . P 7 HOH A 97 797 39 HOH HOH . P 7 HOH A 98 798 96 HOH HOH . P 7 HOH A 99 799 38 HOH HOH . P 7 HOH A 100 800 213 HOH HOH . P 7 HOH A 101 801 160 HOH HOH . P 7 HOH A 102 802 144 HOH HOH . P 7 HOH A 103 803 130 HOH HOH . P 7 HOH A 104 804 61 HOH HOH . P 7 HOH A 105 805 45 HOH HOH . P 7 HOH A 106 806 167 HOH HOH . P 7 HOH A 107 807 83 HOH HOH . P 7 HOH A 108 808 64 HOH HOH . P 7 HOH A 109 809 53 HOH HOH . P 7 HOH A 110 810 32 HOH HOH . P 7 HOH A 111 811 40 HOH HOH . P 7 HOH A 112 812 19 HOH HOH . P 7 HOH A 113 813 201 HOH HOH . P 7 HOH A 114 814 89 HOH HOH . P 7 HOH A 115 815 142 HOH HOH . P 7 HOH A 116 816 108 HOH HOH . P 7 HOH A 117 817 204 HOH HOH . P 7 HOH A 118 818 150 HOH HOH . P 7 HOH A 119 819 92 HOH HOH . P 7 HOH A 120 820 59 HOH HOH . P 7 HOH A 121 821 36 HOH HOH . P 7 HOH A 122 822 124 HOH HOH . P 7 HOH A 123 823 71 HOH HOH . P 7 HOH A 124 824 90 HOH HOH . P 7 HOH A 125 825 139 HOH HOH . P 7 HOH A 126 826 192 HOH HOH . P 7 HOH A 127 827 168 HOH HOH . P 7 HOH A 128 828 131 HOH HOH . P 7 HOH A 129 829 68 HOH HOH . P 7 HOH A 130 830 67 HOH HOH . P 7 HOH A 131 831 132 HOH HOH . P 7 HOH A 132 832 208 HOH HOH . P 7 HOH A 133 833 34 HOH HOH . P 7 HOH A 134 834 195 HOH HOH . P 7 HOH A 135 835 194 HOH HOH . P 7 HOH A 136 836 182 HOH HOH . P 7 HOH A 137 837 153 HOH HOH . P 7 HOH A 138 838 179 HOH HOH . P 7 HOH A 139 839 115 HOH HOH . P 7 HOH A 140 840 116 HOH HOH . P 7 HOH A 141 841 191 HOH HOH . P 7 HOH A 142 842 118 HOH HOH . P 7 HOH A 143 843 133 HOH HOH . P 7 HOH A 144 844 76 HOH HOH . P 7 HOH A 145 845 164 HOH HOH . P 7 HOH A 146 846 205 HOH HOH . P 7 HOH A 147 847 216 HOH HOH . P 7 HOH A 148 848 199 HOH HOH . P 7 HOH A 149 849 88 HOH HOH . P 7 HOH A 150 850 180 HOH HOH . P 7 HOH A 151 851 169 HOH HOH . P 7 HOH A 152 852 148 HOH HOH . P 7 HOH A 153 853 211 HOH HOH . P 7 HOH A 154 854 145 HOH HOH . P 7 HOH A 155 855 196 HOH HOH . P 7 HOH A 156 856 121 HOH HOH . P 7 HOH A 157 857 156 HOH HOH . P 7 HOH A 158 858 193 HOH HOH . P 7 HOH A 159 859 56 HOH HOH . P 7 HOH A 160 860 81 HOH HOH . P 7 HOH A 161 861 170 HOH HOH . P 7 HOH A 162 862 188 HOH HOH . P 7 HOH A 163 863 165 HOH HOH . P 7 HOH A 164 864 173 HOH HOH . P 7 HOH A 165 865 175 HOH HOH . P 7 HOH A 166 866 171 HOH HOH . P 7 HOH A 167 867 190 HOH HOH . P 7 HOH A 168 868 86 HOH HOH . P 7 HOH A 169 869 157 HOH HOH . P 7 HOH A 170 870 46 HOH HOH . P 7 HOH A 171 871 189 HOH HOH . P 7 HOH A 172 872 197 HOH HOH . P 7 HOH A 173 873 215 HOH HOH . P 7 HOH A 174 874 107 HOH HOH . P 7 HOH A 175 875 163 HOH HOH . P 7 HOH A 176 876 177 HOH HOH . P 7 HOH A 177 877 174 HOH HOH . P 7 HOH A 178 878 214 HOH HOH . P 7 HOH A 179 879 146 HOH HOH . P 7 HOH A 180 880 140 HOH HOH . P 7 HOH A 181 881 152 HOH HOH . P 7 HOH A 182 882 161 HOH HOH . P 7 HOH A 183 883 187 HOH HOH . P 7 HOH A 184 884 138 HOH HOH . P 7 HOH A 185 885 209 HOH HOH . P 7 HOH A 186 886 122 HOH HOH . P 7 HOH A 187 887 162 HOH HOH . P 7 HOH A 188 888 143 HOH HOH . P 7 HOH A 189 889 84 HOH HOH . P 7 HOH A 190 890 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 37.919 31.751 8.906 1 57.78 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . C 3 38.684 32.565 8.068 1 57.67 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . C 3 37.086 30.784 8.012 1 59.5 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . C 3 35.855 31.33 7.664 1 62.72 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . C 3 37.975 30.494 6.771 1 59.01 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . C 3 37.455 29.362 6.139 1 56.87 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #