data_6T8I # _model_server_result.job_id bxruTMnMJd28nfPNHkF3vw _model_server_result.datetime_utc '2024-11-27 19:38:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6T8I # _exptl.entry_id 6T8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T8I _cell.length_a 74.578 _cell.length_b 74.578 _cell.length_c 133.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6T8I _atom_sites.fract_transf_matrix[1][1] 0.013409 _atom_sites.fract_transf_matrix[1][2] 0.007742 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 701 701 GOL GOL . C 2 GOL A 1 702 501 GOL GOL . D 3 HOH A 1 801 287 HOH HOH . D 3 HOH A 2 802 243 HOH HOH . D 3 HOH A 3 803 8 HOH HOH . D 3 HOH A 4 804 210 HOH HOH . D 3 HOH A 5 805 267 HOH HOH . D 3 HOH A 6 806 147 HOH HOH . D 3 HOH A 7 807 140 HOH HOH . D 3 HOH A 8 808 92 HOH HOH . D 3 HOH A 9 809 137 HOH HOH . D 3 HOH A 10 810 193 HOH HOH . D 3 HOH A 11 811 57 HOH HOH . D 3 HOH A 12 812 278 HOH HOH . D 3 HOH A 13 813 168 HOH HOH . D 3 HOH A 14 814 220 HOH HOH . D 3 HOH A 15 815 79 HOH HOH . D 3 HOH A 16 816 212 HOH HOH . D 3 HOH A 17 817 173 HOH HOH . D 3 HOH A 18 818 110 HOH HOH . D 3 HOH A 19 819 183 HOH HOH . D 3 HOH A 20 820 134 HOH HOH . D 3 HOH A 21 821 242 HOH HOH . D 3 HOH A 22 822 125 HOH HOH . D 3 HOH A 23 823 101 HOH HOH . D 3 HOH A 24 824 123 HOH HOH . D 3 HOH A 25 825 19 HOH HOH . D 3 HOH A 26 826 82 HOH HOH . D 3 HOH A 27 827 83 HOH HOH . D 3 HOH A 28 828 74 HOH HOH . D 3 HOH A 29 829 331 HOH HOH . D 3 HOH A 30 830 150 HOH HOH . D 3 HOH A 31 831 20 HOH HOH . D 3 HOH A 32 832 211 HOH HOH . D 3 HOH A 33 833 248 HOH HOH . D 3 HOH A 34 834 328 HOH HOH . D 3 HOH A 35 835 257 HOH HOH . D 3 HOH A 36 836 31 HOH HOH . D 3 HOH A 37 837 117 HOH HOH . D 3 HOH A 38 838 106 HOH HOH . D 3 HOH A 39 839 23 HOH HOH . D 3 HOH A 40 840 154 HOH HOH . D 3 HOH A 41 841 231 HOH HOH . D 3 HOH A 42 842 232 HOH HOH . D 3 HOH A 43 843 289 HOH HOH . D 3 HOH A 44 844 87 HOH HOH . D 3 HOH A 45 845 290 HOH HOH . D 3 HOH A 46 846 107 HOH HOH . D 3 HOH A 47 847 151 HOH HOH . D 3 HOH A 48 848 4 HOH HOH . D 3 HOH A 49 849 149 HOH HOH . D 3 HOH A 50 850 202 HOH HOH . D 3 HOH A 51 851 26 HOH HOH . D 3 HOH A 52 852 41 HOH HOH . D 3 HOH A 53 853 86 HOH HOH . D 3 HOH A 54 854 187 HOH HOH . D 3 HOH A 55 855 64 HOH HOH . D 3 HOH A 56 856 94 HOH HOH . D 3 HOH A 57 857 135 HOH HOH . D 3 HOH A 58 858 184 HOH HOH . D 3 HOH A 59 859 13 HOH HOH . D 3 HOH A 60 860 100 HOH HOH . D 3 HOH A 61 861 85 HOH HOH . D 3 HOH A 62 862 127 HOH HOH . D 3 HOH A 63 863 336 HOH HOH . D 3 HOH A 64 864 204 HOH HOH . D 3 HOH A 65 865 61 HOH HOH . D 3 HOH A 66 866 261 HOH HOH . D 3 HOH A 67 867 314 HOH HOH . D 3 HOH A 68 868 49 HOH HOH . D 3 HOH A 69 869 108 HOH HOH . D 3 HOH A 70 870 227 HOH HOH . D 3 HOH A 71 871 179 HOH HOH . D 3 HOH A 72 872 54 HOH HOH . D 3 HOH A 73 873 16 HOH HOH . D 3 HOH A 74 874 46 HOH HOH . D 3 HOH A 75 875 29 HOH HOH . D 3 HOH A 76 876 34 HOH HOH . D 3 HOH A 77 877 67 HOH HOH . D 3 HOH A 78 878 156 HOH HOH . D 3 HOH A 79 879 103 HOH HOH . D 3 HOH A 80 880 216 HOH HOH . D 3 HOH A 81 881 129 HOH HOH . D 3 HOH A 82 882 229 HOH HOH . D 3 HOH A 83 883 38 HOH HOH . D 3 HOH A 84 884 48 HOH HOH . D 3 HOH A 85 885 253 HOH HOH . D 3 HOH A 86 886 195 HOH HOH . D 3 HOH A 87 887 295 HOH HOH . D 3 HOH A 88 888 27 HOH HOH . D 3 HOH A 89 889 188 HOH HOH . D 3 HOH A 90 890 233 HOH HOH . D 3 HOH A 91 891 288 HOH HOH . D 3 HOH A 92 892 90 HOH HOH . D 3 HOH A 93 893 35 HOH HOH . D 3 HOH A 94 894 32 HOH HOH . D 3 HOH A 95 895 77 HOH HOH . D 3 HOH A 96 896 226 HOH HOH . D 3 HOH A 97 897 206 HOH HOH . D 3 HOH A 98 898 224 HOH HOH . D 3 HOH A 99 899 171 HOH HOH . D 3 HOH A 100 900 76 HOH HOH . D 3 HOH A 101 901 175 HOH HOH . D 3 HOH A 102 902 143 HOH HOH . D 3 HOH A 103 903 44 HOH HOH . D 3 HOH A 104 904 197 HOH HOH . D 3 HOH A 105 905 313 HOH HOH . D 3 HOH A 106 906 213 HOH HOH . D 3 HOH A 107 907 361 HOH HOH . D 3 HOH A 108 908 217 HOH HOH . D 3 HOH A 109 909 146 HOH HOH . D 3 HOH A 110 910 239 HOH HOH . D 3 HOH A 111 911 18 HOH HOH . D 3 HOH A 112 912 131 HOH HOH . D 3 HOH A 113 913 170 HOH HOH . D 3 HOH A 114 914 126 HOH HOH . D 3 HOH A 115 915 52 HOH HOH . D 3 HOH A 116 916 22 HOH HOH . D 3 HOH A 117 917 33 HOH HOH . D 3 HOH A 118 918 111 HOH HOH . D 3 HOH A 119 919 177 HOH HOH . D 3 HOH A 120 920 72 HOH HOH . D 3 HOH A 121 921 60 HOH HOH . D 3 HOH A 122 922 96 HOH HOH . D 3 HOH A 123 923 55 HOH HOH . D 3 HOH A 124 924 221 HOH HOH . D 3 HOH A 125 925 81 HOH HOH . D 3 HOH A 126 926 144 HOH HOH . D 3 HOH A 127 927 139 HOH HOH . D 3 HOH A 128 928 286 HOH HOH . D 3 HOH A 129 929 133 HOH HOH . D 3 HOH A 130 930 3 HOH HOH . D 3 HOH A 131 931 62 HOH HOH . D 3 HOH A 132 932 180 HOH HOH . D 3 HOH A 133 933 7 HOH HOH . D 3 HOH A 134 934 237 HOH HOH . D 3 HOH A 135 935 189 HOH HOH . D 3 HOH A 136 936 6 HOH HOH . D 3 HOH A 137 937 50 HOH HOH . D 3 HOH A 138 938 88 HOH HOH . D 3 HOH A 139 939 12 HOH HOH . D 3 HOH A 140 940 174 HOH HOH . D 3 HOH A 141 941 37 HOH HOH . D 3 HOH A 142 942 17 HOH HOH . D 3 HOH A 143 943 200 HOH HOH . D 3 HOH A 144 944 275 HOH HOH . D 3 HOH A 145 945 254 HOH HOH . D 3 HOH A 146 946 15 HOH HOH . D 3 HOH A 147 947 56 HOH HOH . D 3 HOH A 148 948 69 HOH HOH . D 3 HOH A 149 949 240 HOH HOH . D 3 HOH A 150 950 28 HOH HOH . D 3 HOH A 151 951 225 HOH HOH . D 3 HOH A 152 952 91 HOH HOH . D 3 HOH A 153 953 14 HOH HOH . D 3 HOH A 154 954 102 HOH HOH . D 3 HOH A 155 955 291 HOH HOH . D 3 HOH A 156 956 167 HOH HOH . D 3 HOH A 157 957 145 HOH HOH . D 3 HOH A 158 958 21 HOH HOH . D 3 HOH A 159 959 246 HOH HOH . D 3 HOH A 160 960 5 HOH HOH . D 3 HOH A 161 961 9 HOH HOH . D 3 HOH A 162 962 132 HOH HOH . D 3 HOH A 163 963 121 HOH HOH . D 3 HOH A 164 964 10 HOH HOH . D 3 HOH A 165 965 181 HOH HOH . D 3 HOH A 166 966 43 HOH HOH . D 3 HOH A 167 967 80 HOH HOH . D 3 HOH A 168 968 24 HOH HOH . D 3 HOH A 169 969 214 HOH HOH . D 3 HOH A 170 970 73 HOH HOH . D 3 HOH A 171 971 166 HOH HOH . D 3 HOH A 172 972 152 HOH HOH . D 3 HOH A 173 973 119 HOH HOH . D 3 HOH A 174 974 58 HOH HOH . D 3 HOH A 175 975 78 HOH HOH . D 3 HOH A 176 976 190 HOH HOH . D 3 HOH A 177 977 104 HOH HOH . D 3 HOH A 178 978 36 HOH HOH . D 3 HOH A 179 979 75 HOH HOH . D 3 HOH A 180 980 355 HOH HOH . D 3 HOH A 181 981 182 HOH HOH . D 3 HOH A 182 982 128 HOH HOH . D 3 HOH A 183 983 292 HOH HOH . D 3 HOH A 184 984 306 HOH HOH . D 3 HOH A 185 985 335 HOH HOH . D 3 HOH A 186 986 172 HOH HOH . D 3 HOH A 187 987 236 HOH HOH . D 3 HOH A 188 988 113 HOH HOH . D 3 HOH A 189 989 155 HOH HOH . D 3 HOH A 190 990 68 HOH HOH . D 3 HOH A 191 991 118 HOH HOH . D 3 HOH A 192 992 317 HOH HOH . D 3 HOH A 193 993 163 HOH HOH . D 3 HOH A 194 994 266 HOH HOH . D 3 HOH A 195 995 47 HOH HOH . D 3 HOH A 196 996 136 HOH HOH . D 3 HOH A 197 997 252 HOH HOH . D 3 HOH A 198 998 228 HOH HOH . D 3 HOH A 199 999 65 HOH HOH . D 3 HOH A 200 1000 158 HOH HOH . D 3 HOH A 201 1001 161 HOH HOH . D 3 HOH A 202 1002 122 HOH HOH . D 3 HOH A 203 1003 337 HOH HOH . D 3 HOH A 204 1004 71 HOH HOH . D 3 HOH A 205 1005 219 HOH HOH . D 3 HOH A 206 1006 301 HOH HOH . D 3 HOH A 207 1007 273 HOH HOH . D 3 HOH A 208 1008 109 HOH HOH . D 3 HOH A 209 1009 201 HOH HOH . D 3 HOH A 210 1010 114 HOH HOH . D 3 HOH A 211 1011 274 HOH HOH . D 3 HOH A 212 1012 45 HOH HOH . D 3 HOH A 213 1013 323 HOH HOH . D 3 HOH A 214 1014 124 HOH HOH . D 3 HOH A 215 1015 59 HOH HOH . D 3 HOH A 216 1016 256 HOH HOH . D 3 HOH A 217 1017 312 HOH HOH . D 3 HOH A 218 1018 245 HOH HOH . D 3 HOH A 219 1019 268 HOH HOH . D 3 HOH A 220 1020 70 HOH HOH . D 3 HOH A 221 1021 164 HOH HOH . D 3 HOH A 222 1022 218 HOH HOH . D 3 HOH A 223 1023 327 HOH HOH . D 3 HOH A 224 1024 316 HOH HOH . D 3 HOH A 225 1025 157 HOH HOH . D 3 HOH A 226 1026 215 HOH HOH . D 3 HOH A 227 1027 315 HOH HOH . D 3 HOH A 228 1028 186 HOH HOH . D 3 HOH A 229 1029 222 HOH HOH . D 3 HOH A 230 1030 112 HOH HOH . D 3 HOH A 231 1031 105 HOH HOH . D 3 HOH A 232 1032 250 HOH HOH . D 3 HOH A 233 1033 272 HOH HOH . D 3 HOH A 234 1034 93 HOH HOH . D 3 HOH A 235 1035 230 HOH HOH . D 3 HOH A 236 1036 95 HOH HOH . D 3 HOH A 237 1037 351 HOH HOH . D 3 HOH A 238 1038 63 HOH HOH . D 3 HOH A 239 1039 84 HOH HOH . D 3 HOH A 240 1040 40 HOH HOH . D 3 HOH A 241 1041 196 HOH HOH . D 3 HOH A 242 1042 298 HOH HOH . D 3 HOH A 243 1043 263 HOH HOH . D 3 HOH A 244 1044 325 HOH HOH . D 3 HOH A 245 1045 324 HOH HOH . D 3 HOH A 246 1046 311 HOH HOH . D 3 HOH A 247 1047 264 HOH HOH . D 3 HOH A 248 1048 255 HOH HOH . D 3 HOH A 249 1049 307 HOH HOH . D 3 HOH A 250 1050 191 HOH HOH . D 3 HOH A 251 1051 322 HOH HOH . D 3 HOH A 252 1052 223 HOH HOH . D 3 HOH A 253 1053 120 HOH HOH . D 3 HOH A 254 1054 162 HOH HOH . D 3 HOH A 255 1055 208 HOH HOH . D 3 HOH A 256 1056 176 HOH HOH . D 3 HOH A 257 1057 198 HOH HOH . D 3 HOH A 258 1058 321 HOH HOH . D 3 HOH A 259 1059 141 HOH HOH . D 3 HOH A 260 1060 244 HOH HOH . D 3 HOH A 261 1061 329 HOH HOH . D 3 HOH A 262 1062 241 HOH HOH . D 3 HOH A 263 1063 332 HOH HOH . D 3 HOH A 264 1064 294 HOH HOH . D 3 HOH A 265 1065 207 HOH HOH . D 3 HOH A 266 1066 238 HOH HOH . D 3 HOH A 267 1067 251 HOH HOH . D 3 HOH A 268 1068 296 HOH HOH . D 3 HOH A 269 1069 269 HOH HOH . D 3 HOH A 270 1070 326 HOH HOH . D 3 HOH A 271 1071 249 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 34.413 26.104 75.968 1 24.81 ? C1 GOL 701 A 1 HETATM 2 O O1 GOL . . . B 2 33.582 26.269 74.838 1 23.14 ? O1 GOL 701 A 1 HETATM 3 C C2 GOL . . . B 2 33.564 25.925 77.227 1 29.35 ? C2 GOL 701 A 1 HETATM 4 O O2 GOL . . . B 2 32.49 26.819 77.287 1 35.08 ? O2 GOL 701 A 1 HETATM 5 C C3 GOL . . . B 2 33.036 24.479 77.223 1 26.65 ? C3 GOL 701 A 1 HETATM 6 O O3 GOL . . . B 2 32.307 24.297 78.427 1 29.79 ? O3 GOL 701 A 1 HETATM 7 H H11 GOL . . . B 2 35 26.865 76.101 1 29.77 ? H11 GOL 701 A 1 HETATM 8 H H12 GOL . . . B 2 34.995 25.332 75.881 1 29.77 ? H12 GOL 701 A 1 HETATM 9 H HO1 GOL . . . B 2 33.944 25.831 74.206 1 27.77 ? HO1 GOL 701 A 1 HETATM 10 H H2 GOL . . . B 2 34.136 26.093 77.993 1 35.21 ? H2 GOL 701 A 1 HETATM 11 H HO2 GOL . . . B 2 32.413 27.081 78.092 1 42.1 ? HO2 GOL 701 A 1 HETATM 12 H H31 GOL . . . B 2 32.501 24.343 76.426 1 31.98 ? H31 GOL 701 A 1 HETATM 13 H H32 GOL . . . B 2 33.788 23.872 77.134 1 31.98 ? H32 GOL 701 A 1 HETATM 14 H HO3 GOL . . . B 2 31.499 24.157 78.205 1 35.74 ? HO3 GOL 701 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #