data_6T8Q # _model_server_result.job_id TwCQp6sGt6pHqHmB9Dz5lA _model_server_result.datetime_utc '2024-11-26 22:46:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6T8Q # _exptl.entry_id 6T8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T8Q _cell.length_a 144.829 _cell.length_b 144.829 _cell.length_c 139.653 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 144.829 0 -69.8265 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 289 A SER 262 1_555 A N LLP 290 A LLP 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C LLP 290 A LLP 263 1_555 A N ILE 291 A ILE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A OD1 ASP 137 A ASP 110 1_555 I CD CD . A CD 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A SG CYS 149 A CYS 122 1_555 C CD CD . A CD 502 11_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc3 A OE1 GLU 153 A GLU 126 1_555 C CD CD . A CD 502 11_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc4 A OE2 GLU 153 A GLU 126 1_555 C CD CD . A CD 502 11_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A O LEU 176 A LEU 149 1_555 H CD CD . A CD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc6 A O CYS 181 A CYS 154 1_555 H CD CD . A CD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc7 A SG CYS 181 A CYS 154 1_555 H CD CD . A CD 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc8 A OD1 ASP 196 A ASP 169 1_555 D CD CD . A CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc9 A OD1 ASP 196 A ASP 169 1_555 D CD CD . A CD 503 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc10 A OE1 GLU 242 A GLU 215 1_555 D CD CD . A CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc11 A OE2 GLU 242 A GLU 215 1_555 D CD CD . A CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 A OE1 GLU 242 A GLU 215 1_555 D CD CD . A CD 503 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc13 A OD1 ASP 251 A ASP 224 1_555 E CD CD . A CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc14 A OE1 GLU 309 A GLU 282 1_555 J CD CD . A CD 509 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.457 ? metalc ? metalc15 A OE1 GLU 309 A GLU 282 1_555 J CD CD . A CD 509 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.449 ? metalc ? metalc16 A OE2 GLU 309 A GLU 282 1_555 J CD CD . A CD 509 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.448 ? metalc ? metalc17 A NE2 HIS 314 A HIS 287 1_555 C CD CD . A CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc18 A OD2 ASP 347 A ASP 320 1_555 F CD CD . A CD 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc19 A OD2 ASP 351 A ASP 324 1_555 F CD CD . A CD 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc20 C CD CD . A CD 502 1_555 M O HOH . A HOH 702 11_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc21 E CD CD . A CD 504 1_555 M O HOH . A HOH 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T8Q _atom_sites.fract_transf_matrix[1][1] 0.006905 _atom_sites.fract_transf_matrix[1][2] 0.003986 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MVQ A 1 501 1 MVQ INX . C 3 CD A 1 502 1 CD CD . D 3 CD A 1 503 2 CD CD . E 3 CD A 1 504 3 CD CD . F 3 CD A 1 505 4 CD CD . G 3 CD A 1 506 5 CD CD . H 3 CD A 1 507 6 CD CD . I 3 CD A 1 508 7 CD CD . J 3 CD A 1 509 8 CD CD . K 4 CL A 1 510 9 CL CL . L 5 ACT A 1 511 10 ACT ACT . M 6 HOH A 1 601 6 HOH HOH . M 6 HOH A 2 602 106 HOH HOH . M 6 HOH A 3 603 133 HOH HOH . M 6 HOH A 4 604 128 HOH HOH . M 6 HOH A 5 605 161 HOH HOH . M 6 HOH A 6 606 11 HOH HOH . M 6 HOH A 7 607 23 HOH HOH . M 6 HOH A 8 608 188 HOH HOH . M 6 HOH A 9 609 131 HOH HOH . M 6 HOH A 10 610 141 HOH HOH . M 6 HOH A 11 611 14 HOH HOH . M 6 HOH A 12 612 142 HOH HOH . M 6 HOH A 13 613 134 HOH HOH . M 6 HOH A 14 614 151 HOH HOH . M 6 HOH A 15 615 170 HOH HOH . M 6 HOH A 16 616 113 HOH HOH . M 6 HOH A 17 617 169 HOH HOH . M 6 HOH A 18 618 104 HOH HOH . M 6 HOH A 19 619 76 HOH HOH . M 6 HOH A 20 620 163 HOH HOH . M 6 HOH A 21 621 85 HOH HOH . M 6 HOH A 22 622 53 HOH HOH . M 6 HOH A 23 623 114 HOH HOH . M 6 HOH A 24 624 171 HOH HOH . M 6 HOH A 25 625 7 HOH HOH . M 6 HOH A 26 626 105 HOH HOH . M 6 HOH A 27 627 193 HOH HOH . M 6 HOH A 28 628 109 HOH HOH . M 6 HOH A 29 629 121 HOH HOH . M 6 HOH A 30 630 13 HOH HOH . M 6 HOH A 31 631 15 HOH HOH . M 6 HOH A 32 632 42 HOH HOH . M 6 HOH A 33 633 8 HOH HOH . M 6 HOH A 34 634 36 HOH HOH . M 6 HOH A 35 635 125 HOH HOH . M 6 HOH A 36 636 112 HOH HOH . M 6 HOH A 37 637 138 HOH HOH . M 6 HOH A 38 638 88 HOH HOH . M 6 HOH A 39 639 155 HOH HOH . M 6 HOH A 40 640 145 HOH HOH . M 6 HOH A 41 641 148 HOH HOH . M 6 HOH A 42 642 48 HOH HOH . M 6 HOH A 43 643 100 HOH HOH . M 6 HOH A 44 644 167 HOH HOH . M 6 HOH A 45 645 180 HOH HOH . M 6 HOH A 46 646 57 HOH HOH . M 6 HOH A 47 647 111 HOH HOH . M 6 HOH A 48 648 49 HOH HOH . M 6 HOH A 49 649 9 HOH HOH . M 6 HOH A 50 650 183 HOH HOH . M 6 HOH A 51 651 31 HOH HOH . M 6 HOH A 52 652 32 HOH HOH . M 6 HOH A 53 653 129 HOH HOH . M 6 HOH A 54 654 25 HOH HOH . M 6 HOH A 55 655 82 HOH HOH . M 6 HOH A 56 656 110 HOH HOH . M 6 HOH A 57 657 5 HOH HOH . M 6 HOH A 58 658 47 HOH HOH . M 6 HOH A 59 659 101 HOH HOH . M 6 HOH A 60 660 157 HOH HOH . M 6 HOH A 61 661 2 HOH HOH . M 6 HOH A 62 662 71 HOH HOH . M 6 HOH A 63 663 18 HOH HOH . M 6 HOH A 64 664 126 HOH HOH . M 6 HOH A 65 665 164 HOH HOH . M 6 HOH A 66 666 4 HOH HOH . M 6 HOH A 67 667 21 HOH HOH . M 6 HOH A 68 668 139 HOH HOH . M 6 HOH A 69 669 67 HOH HOH . M 6 HOH A 70 670 146 HOH HOH . M 6 HOH A 71 671 130 HOH HOH . M 6 HOH A 72 672 127 HOH HOH . M 6 HOH A 73 673 162 HOH HOH . M 6 HOH A 74 674 54 HOH HOH . M 6 HOH A 75 675 64 HOH HOH . M 6 HOH A 76 676 123 HOH HOH . M 6 HOH A 77 677 77 HOH HOH . M 6 HOH A 78 678 99 HOH HOH . M 6 HOH A 79 679 75 HOH HOH . M 6 HOH A 80 680 40 HOH HOH . M 6 HOH A 81 681 45 HOH HOH . M 6 HOH A 82 682 136 HOH HOH . M 6 HOH A 83 683 178 HOH HOH . M 6 HOH A 84 684 61 HOH HOH . M 6 HOH A 85 685 158 HOH HOH . M 6 HOH A 86 686 144 HOH HOH . M 6 HOH A 87 687 37 HOH HOH . M 6 HOH A 88 688 33 HOH HOH . M 6 HOH A 89 689 116 HOH HOH . M 6 HOH A 90 690 98 HOH HOH . M 6 HOH A 91 691 120 HOH HOH . M 6 HOH A 92 692 55 HOH HOH . M 6 HOH A 93 693 176 HOH HOH . M 6 HOH A 94 694 79 HOH HOH . M 6 HOH A 95 695 175 HOH HOH . M 6 HOH A 96 696 107 HOH HOH . M 6 HOH A 97 697 184 HOH HOH . M 6 HOH A 98 698 191 HOH HOH . M 6 HOH A 99 699 149 HOH HOH . M 6 HOH A 100 700 166 HOH HOH . M 6 HOH A 101 701 186 HOH HOH . M 6 HOH A 102 702 1 HOH HOH . M 6 HOH A 103 703 102 HOH HOH . M 6 HOH A 104 704 118 HOH HOH . M 6 HOH A 105 705 156 HOH HOH . M 6 HOH A 106 706 43 HOH HOH . M 6 HOH A 107 707 177 HOH HOH . M 6 HOH A 108 708 108 HOH HOH . M 6 HOH A 109 709 41 HOH HOH . M 6 HOH A 110 710 62 HOH HOH . M 6 HOH A 111 711 46 HOH HOH . M 6 HOH A 112 712 52 HOH HOH . M 6 HOH A 113 713 59 HOH HOH . M 6 HOH A 114 714 91 HOH HOH . M 6 HOH A 115 715 87 HOH HOH . M 6 HOH A 116 716 19 HOH HOH . M 6 HOH A 117 717 3 HOH HOH . M 6 HOH A 118 718 143 HOH HOH . M 6 HOH A 119 719 147 HOH HOH . M 6 HOH A 120 720 122 HOH HOH . M 6 HOH A 121 721 44 HOH HOH . M 6 HOH A 122 722 165 HOH HOH . M 6 HOH A 123 723 132 HOH HOH . M 6 HOH A 124 724 153 HOH HOH . M 6 HOH A 125 725 50 HOH HOH . M 6 HOH A 126 726 17 HOH HOH . M 6 HOH A 127 727 83 HOH HOH . M 6 HOH A 128 728 192 HOH HOH . M 6 HOH A 129 729 117 HOH HOH . M 6 HOH A 130 730 119 HOH HOH . M 6 HOH A 131 731 135 HOH HOH . M 6 HOH A 132 732 24 HOH HOH . M 6 HOH A 133 733 168 HOH HOH . M 6 HOH A 134 734 28 HOH HOH . M 6 HOH A 135 735 194 HOH HOH . M 6 HOH A 136 736 27 HOH HOH . M 6 HOH A 137 737 30 HOH HOH . M 6 HOH A 138 738 115 HOH HOH . M 6 HOH A 139 739 179 HOH HOH . M 6 HOH A 140 740 182 HOH HOH . M 6 HOH A 141 741 124 HOH HOH . M 6 HOH A 142 742 137 HOH HOH . M 6 HOH A 143 743 140 HOH HOH . M 6 HOH A 144 744 181 HOH HOH . M 6 HOH A 145 745 185 HOH HOH . M 6 HOH A 146 746 187 HOH HOH . M 6 HOH A 147 747 159 HOH HOH . M 6 HOH A 148 748 154 HOH HOH . M 6 HOH A 149 749 103 HOH HOH . M 6 HOH A 150 750 150 HOH HOH . M 6 HOH A 151 751 189 HOH HOH . M 6 HOH A 152 752 173 HOH HOH . M 6 HOH A 153 753 190 HOH HOH . M 6 HOH A 154 754 174 HOH HOH . M 6 HOH A 155 755 172 HOH HOH . M 6 HOH A 156 756 160 HOH HOH . M 6 HOH A 157 757 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 52.739 _atom_site.Cartn_y 4.228 _atom_site.Cartn_z -20.333 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 122.75 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #