data_6T99
#
_model_server_result.job_id            bQSxh5sWyANvJhkfBoocIw 
_model_server_result.datetime_utc      '2024-11-24 23:32:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t99 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":101}' 
#
_entry.id    6T99 
#
_exptl.entry_id    6T99 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.183 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl alpha-L-fucopyranoside' 
_entity.pdbx_number_of_molecules    18 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         96.42 
_cell.angle_beta          98.7 
_cell.angle_gamma         103.36 
_cell.entry_id            6T99 
_cell.length_a            36.602 
_cell.length_b            44.425 
_cell.length_c            116.574 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T99 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
? trimeric 3 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,J,K,L,M,N,O,DA,EA,FA 1 1 
D,E,F,P,Q,R,S,T,U,V,GA,HA,IA 2 1 
G,H,I,W,X,Y,Z,AA,BA,CA,JA,KA,LA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 BA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 E OD1 ASN 47 E ASN 48 1_555 T NA NA . E NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
metalc ? metalc2 E O TYR 64 E TYR 65 1_555 T NA NA . E NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
metalc ? metalc3 E OG SER 66 E SER 67 1_555 T NA NA . E NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc4 T NA NA . E NA 103 1_555 F OG1 THR 5 F THR 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc5 G O SER 52 G SER 53 1_555 AA NA NA . H NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc6 H O SER 9 H SER 10 1_555 AA NA NA . H NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? 
#
_chem_comp.formula           'C7 H14 O5' 
_chem_comp.formula_weight    178.183 
_chem_comp.id                MFU 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl alpha-L-fucopyranoside' 
_chem_comp.type              l-saccharide 
_chem_comp.pdbx_synonyms     'ALPHA-L-METHYL-FUCOSE;methyl 6-deoxy-alpha-L-galactopyranoside;methyl alpha-L-fucoside;methyl L-fucoside;methyl fucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MFU sing 218 n n 
C1 O1 MFU sing 219 n n 
C1 O5 MFU sing 220 n n 
C1 H1 MFU sing 221 n n 
C2 C3 MFU sing 222 n n 
C2 O2 MFU sing 223 n n 
C2 H2 MFU sing 224 n n 
C3 C4 MFU sing 225 n n 
C3 O3 MFU sing 226 n n 
C3 H3 MFU sing 227 n n 
C4 C5 MFU sing 228 n n 
C4 O4 MFU sing 229 n n 
C4 H4 MFU sing 230 n n 
C5 C6 MFU sing 231 n n 
C5 O5 MFU sing 232 n n 
C5 H5 MFU sing 233 n n 
C6 H61 MFU sing 234 n n 
C6 H62 MFU sing 235 n n 
C6 H63 MFU sing 236 n n 
O1 CM MFU sing 237 n n 
O2 HO2 MFU sing 238 n n 
O3 HO3 MFU sing 239 n n 
O4 HO4 MFU sing 240 n n 
CM HM1 MFU sing 241 n n 
CM HM2 MFU sing 242 n n 
CM HM3 MFU sing 243 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MFU LFucp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MFU 1-methyl-a-L-fucopyranose 'COMMON NAME' GMML 1 
MFU o1-methyl-a-L-fucose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     6T99 
_atom_sites.fract_transf_matrix[1][1]    0.027321 
_atom_sites.fract_transf_matrix[1][2]    0.006486 
_atom_sites.fract_transf_matrix[1][3]    0.005233 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023135 
_atom_sites.fract_transf_matrix[2][3]    0.003574 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008781 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 MFU A 1 101 920 MFU MFU . 
K 2 MFU A 1 102 910 MFU MFU . 
L 2 MFU B 1 101 910 MFU MFU . 
M 2 MFU B 1 102 920 MFU MFU . 
N 2 MFU C 1 101 910 MFU MFU . 
O 2 MFU C 1 102 920 MFU MFU . 
P 2 MFU D 1 101 910 MFU MFU . 
Q 2 MFU D 1 102 920 MFU MFU . 
R 2 MFU E 1 101 920 MFU MFU . 
S 2 MFU E 1 102 910 MFU MFU . 
T 3 NA E 1 103 1 NA NA . 
U 2 MFU F 1 101 910 MFU MFU . 
V 2 MFU F 1 102 920 MFU MFU . 
W 2 MFU G 1 101 920 MFU MFU . 
X 2 MFU G 1 102 910 MFU MFU . 
Y 2 MFU H 1 101 910 MFU MFU . 
Z 2 MFU H 1 102 920 MFU MFU . 
AA 3 NA H 1 103 2 NA NA . 
BA 2 MFU I 1 101 910 MFU MFU . 
CA 2 MFU I 1 102 920 MFU MFU . 
DA 4 HOH A 1 201 36 HOH HOH . 
DA 4 HOH A 2 202 7 HOH HOH . 
DA 4 HOH A 3 203 10 HOH HOH . 
DA 4 HOH A 4 204 114 HOH HOH . 
DA 4 HOH A 5 205 43 HOH HOH . 
DA 4 HOH A 6 206 6 HOH HOH . 
DA 4 HOH A 7 207 98 HOH HOH . 
DA 4 HOH A 8 208 21 HOH HOH . 
DA 4 HOH A 9 209 66 HOH HOH . 
DA 4 HOH A 10 210 8 HOH HOH . 
DA 4 HOH A 11 211 102 HOH HOH . 
DA 4 HOH A 12 212 9 HOH HOH . 
DA 4 HOH A 13 213 95 HOH HOH . 
DA 4 HOH A 14 214 81 HOH HOH . 
DA 4 HOH A 15 215 101 HOH HOH . 
DA 4 HOH A 16 216 30 HOH HOH . 
DA 4 HOH A 17 217 19 HOH HOH . 
DA 4 HOH A 18 218 47 HOH HOH . 
DA 4 HOH A 19 219 57 HOH HOH . 
EA 4 HOH B 1 201 105 HOH HOH . 
EA 4 HOH B 2 202 56 HOH HOH . 
EA 4 HOH B 3 203 11 HOH HOH . 
EA 4 HOH B 4 204 12 HOH HOH . 
EA 4 HOH B 5 205 38 HOH HOH . 
EA 4 HOH B 6 206 48 HOH HOH . 
EA 4 HOH B 7 207 99 HOH HOH . 
EA 4 HOH B 8 208 27 HOH HOH . 
EA 4 HOH B 9 209 24 HOH HOH . 
EA 4 HOH B 10 210 37 HOH HOH . 
EA 4 HOH B 11 211 91 HOH HOH . 
FA 4 HOH C 1 201 70 HOH HOH . 
FA 4 HOH C 2 202 82 HOH HOH . 
FA 4 HOH C 3 203 88 HOH HOH . 
FA 4 HOH C 4 204 80 HOH HOH . 
FA 4 HOH C 5 205 40 HOH HOH . 
FA 4 HOH C 6 206 84 HOH HOH . 
FA 4 HOH C 7 207 52 HOH HOH . 
FA 4 HOH C 8 208 29 HOH HOH . 
GA 4 HOH D 1 201 13 HOH HOH . 
GA 4 HOH D 2 202 59 HOH HOH . 
GA 4 HOH D 3 203 107 HOH HOH . 
GA 4 HOH D 4 204 45 HOH HOH . 
GA 4 HOH D 5 205 89 HOH HOH . 
GA 4 HOH D 6 206 106 HOH HOH . 
GA 4 HOH D 7 207 93 HOH HOH . 
GA 4 HOH D 8 208 53 HOH HOH . 
GA 4 HOH D 9 209 68 HOH HOH . 
GA 4 HOH D 10 210 44 HOH HOH . 
GA 4 HOH D 11 211 20 HOH HOH . 
GA 4 HOH D 12 212 1 HOH HOH . 
GA 4 HOH D 13 213 87 HOH HOH . 
GA 4 HOH D 14 214 63 HOH HOH . 
GA 4 HOH D 15 215 49 HOH HOH . 
GA 4 HOH D 16 216 69 HOH HOH . 
GA 4 HOH D 17 217 62 HOH HOH . 
GA 4 HOH D 18 218 22 HOH HOH . 
GA 4 HOH D 19 219 110 HOH HOH . 
GA 4 HOH D 20 220 5 HOH HOH . 
GA 4 HOH D 21 221 31 HOH HOH . 
HA 4 HOH E 1 201 60 HOH HOH . 
HA 4 HOH E 2 202 50 HOH HOH . 
HA 4 HOH E 3 203 3 HOH HOH . 
HA 4 HOH E 4 204 94 HOH HOH . 
HA 4 HOH E 5 205 75 HOH HOH . 
HA 4 HOH E 6 206 41 HOH HOH . 
HA 4 HOH E 7 207 23 HOH HOH . 
HA 4 HOH E 8 208 73 HOH HOH . 
HA 4 HOH E 9 209 111 HOH HOH . 
HA 4 HOH E 10 210 113 HOH HOH . 
IA 4 HOH F 1 201 14 HOH HOH . 
IA 4 HOH F 2 202 54 HOH HOH . 
IA 4 HOH F 3 203 51 HOH HOH . 
IA 4 HOH F 4 204 55 HOH HOH . 
IA 4 HOH F 5 205 85 HOH HOH . 
IA 4 HOH F 6 206 34 HOH HOH . 
IA 4 HOH F 7 207 67 HOH HOH . 
IA 4 HOH F 8 208 58 HOH HOH . 
IA 4 HOH F 9 209 2 HOH HOH . 
IA 4 HOH F 10 210 83 HOH HOH . 
IA 4 HOH F 11 211 79 HOH HOH . 
IA 4 HOH F 12 212 32 HOH HOH . 
IA 4 HOH F 13 213 72 HOH HOH . 
IA 4 HOH F 14 214 104 HOH HOH . 
IA 4 HOH F 15 215 65 HOH HOH . 
JA 4 HOH G 1 201 64 HOH HOH . 
JA 4 HOH G 2 202 78 HOH HOH . 
JA 4 HOH G 3 203 39 HOH HOH . 
JA 4 HOH G 4 204 17 HOH HOH . 
JA 4 HOH G 5 205 33 HOH HOH . 
JA 4 HOH G 6 206 4 HOH HOH . 
JA 4 HOH G 7 207 16 HOH HOH . 
KA 4 HOH H 1 201 97 HOH HOH . 
KA 4 HOH H 2 202 96 HOH HOH . 
KA 4 HOH H 3 203 74 HOH HOH . 
KA 4 HOH H 4 204 28 HOH HOH . 
KA 4 HOH H 5 205 46 HOH HOH . 
KA 4 HOH H 6 206 103 HOH HOH . 
KA 4 HOH H 7 207 109 HOH HOH . 
KA 4 HOH H 8 208 25 HOH HOH . 
KA 4 HOH H 9 209 76 HOH HOH . 
KA 4 HOH H 10 210 92 HOH HOH . 
LA 4 HOH I 1 201 71 HOH HOH . 
LA 4 HOH I 2 202 77 HOH HOH . 
LA 4 HOH I 3 203 15 HOH HOH . 
LA 4 HOH I 4 204 90 HOH HOH . 
LA 4 HOH I 5 205 42 HOH HOH . 
LA 4 HOH I 6 206 100 HOH HOH . 
LA 4 HOH I 7 207 108 HOH HOH . 
LA 4 HOH I 8 208 61 HOH HOH . 
LA 4 HOH I 9 209 26 HOH HOH . 
LA 4 HOH I 10 210 86 HOH HOH . 
LA 4 HOH I 11 211 18 HOH HOH . 
LA 4 HOH I 12 212 35 HOH HOH . 
LA 4 HOH I 13 213 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MFU . . . N 2 10.088 -24.707 -10.044 1 41.6 ? C1 MFU 101 C 1 
HETATM 2 C C2 MFU . . . N 2 8.725 -24.875 -9.4 1 38.21 ? C2 MFU 101 C 1 
HETATM 3 C C3 MFU . . . N 2 8.665 -24.162 -8.059 1 37.24 ? C3 MFU 101 C 1 
HETATM 4 C C4 MFU . . . N 2 9.217 -22.736 -8.108 1 38.86 ? C4 MFU 101 C 1 
HETATM 5 C C5 MFU . . . N 2 10.614 -22.733 -8.72 1 40.31 ? C5 MFU 101 C 1 
HETATM 6 C C6 MFU . . . N 2 11.213 -21.327 -8.842 1 39.5 ? C6 MFU 101 C 1 
HETATM 7 O O1 MFU . . . N 2 11.049 -25.546 -9.4 1 46.1 ? O1 MFU 101 C 1 
HETATM 8 O O2 MFU . . . N 2 8.474 -26.279 -9.241 1 38.24 ? O2 MFU 101 C 1 
HETATM 9 O O3 MFU . . . N 2 7.308 -24.134 -7.613 1 34.86 ? O3 MFU 101 C 1 
HETATM 10 O O4 MFU . . . N 2 8.351 -21.86 -8.84 1 36.78 ? O4 MFU 101 C 1 
HETATM 11 O O5 MFU . . . N 2 10.51 -23.332 -10.006 1 43.39 ? O5 MFU 101 C 1 
HETATM 12 C CM MFU . . . N 2 12.337 -25.484 -10.037 1 44.2 ? CM MFU 101 C 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           12 
#