data_6T9A # _model_server_result.job_id rm-hd8hHFYLEwILuD9ng4Q _model_server_result.datetime_utc '2024-11-13 15:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":101}' # _entry.id 6T9A # _exptl.entry_id 6T9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-L-fucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 116.4 _cell.angle_beta 94.54 _cell.angle_gamma 115.49 _cell.entry_id 6T9A _cell.length_a 40.262 _cell.length_b 42.105 _cell.length_c 44.02 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 I N N ? 2 M N N ? 2 P N N # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-L-fucopyranose _chem_comp.type 'l-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-L-fucose;6-deoxy-alpha-L-galactopyranose;L-fucose;fucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUC sing 92 n n C1 O1 FUC sing 93 n n C1 O5 FUC sing 94 n n C1 H1 FUC sing 95 n n C2 C3 FUC sing 96 n n C2 O2 FUC sing 97 n n C2 H2 FUC sing 98 n n C3 C4 FUC sing 99 n n C3 O3 FUC sing 100 n n C3 H3 FUC sing 101 n n C4 C5 FUC sing 102 n n C4 O4 FUC sing 103 n n C4 H4 FUC sing 104 n n C5 C6 FUC sing 105 n n C5 O5 FUC sing 106 n n C5 H5 FUC sing 107 n n C6 H61 FUC sing 108 n n C6 H62 FUC sing 109 n n C6 H63 FUC sing 110 n n O1 HO1 FUC sing 111 n n O2 HO2 FUC sing 112 n n O3 HO3 FUC sing 113 n n O4 HO4 FUC sing 114 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUC LFucpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUC a-L-fucopyranose 'COMMON NAME' GMML 1 FUC a-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUC Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6T9A _atom_sites.fract_transf_matrix[1][1] 0.024837 _atom_sites.fract_transf_matrix[1][2] 0.011842 _atom_sites.fract_transf_matrix[1][3] 0.009774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026311 _atom_sites.fract_transf_matrix[2][3] 0.016535 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026915 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FUC A 1 101 910 FUC FUC . E 3 FUL A 1 102 911 FUL FUL . F 2 FUC A 1 103 920 FUC FUC . G 3 FUL A 1 104 921 FUL FUL . H 4 EDO A 1 105 990 EDO EDO . I 2 FUC B 1 101 910 FUC FUC . J 3 FUL B 1 102 911 FUL FUL . K 3 FUL B 1 103 920 FUL FUL . L 4 EDO B 1 104 990 EDO EDO . M 2 FUC C 1 101 910 FUC FUC . N 3 FUL C 1 102 911 FUL FUL . O 4 EDO C 1 103 990 EDO EDO . P 2 FUC C 1 104 920 FUC FUC . Q 3 FUL C 1 105 921 FUL FUL . R 5 HOH A 1 201 37 HOH HOH . R 5 HOH A 2 202 141 HOH HOH . R 5 HOH A 3 203 255 HOH HOH . R 5 HOH A 4 204 143 HOH HOH . R 5 HOH A 5 205 186 HOH HOH . R 5 HOH A 6 206 129 HOH HOH . R 5 HOH A 7 207 74 HOH HOH . R 5 HOH A 8 208 187 HOH HOH . R 5 HOH A 9 209 231 HOH HOH . R 5 HOH A 10 210 89 HOH HOH . R 5 HOH A 11 211 165 HOH HOH . R 5 HOH A 12 212 47 HOH HOH . R 5 HOH A 13 213 132 HOH HOH . R 5 HOH A 14 214 243 HOH HOH . R 5 HOH A 15 215 56 HOH HOH . R 5 HOH A 16 216 32 HOH HOH . R 5 HOH A 17 217 92 HOH HOH . R 5 HOH A 18 218 1 HOH HOH . R 5 HOH A 19 219 145 HOH HOH . R 5 HOH A 20 220 43 HOH HOH . R 5 HOH A 21 221 49 HOH HOH . R 5 HOH A 22 222 77 HOH HOH . R 5 HOH A 23 223 67 HOH HOH . R 5 HOH A 24 224 194 HOH HOH . R 5 HOH A 25 225 7 HOH HOH . R 5 HOH A 26 226 126 HOH HOH . R 5 HOH A 27 227 14 HOH HOH . R 5 HOH A 28 228 123 HOH HOH . R 5 HOH A 29 229 105 HOH HOH . R 5 HOH A 30 230 113 HOH HOH . R 5 HOH A 31 231 91 HOH HOH . R 5 HOH A 32 232 28 HOH HOH . R 5 HOH A 33 233 119 HOH HOH . R 5 HOH A 34 234 81 HOH HOH . R 5 HOH A 35 235 58 HOH HOH . R 5 HOH A 36 236 21 HOH HOH . R 5 HOH A 37 237 199 HOH HOH . R 5 HOH A 38 238 80 HOH HOH . R 5 HOH A 39 239 237 HOH HOH . R 5 HOH A 40 240 159 HOH HOH . R 5 HOH A 41 241 184 HOH HOH . R 5 HOH A 42 242 109 HOH HOH . R 5 HOH A 43 243 4 HOH HOH . R 5 HOH A 44 244 215 HOH HOH . R 5 HOH A 45 245 175 HOH HOH . R 5 HOH A 46 246 118 HOH HOH . R 5 HOH A 47 247 82 HOH HOH . R 5 HOH A 48 248 131 HOH HOH . R 5 HOH A 49 249 149 HOH HOH . R 5 HOH A 50 250 100 HOH HOH . R 5 HOH A 51 251 84 HOH HOH . R 5 HOH A 52 252 244 HOH HOH . R 5 HOH A 53 253 206 HOH HOH . R 5 HOH A 54 254 227 HOH HOH . R 5 HOH A 55 255 16 HOH HOH . R 5 HOH A 56 256 150 HOH HOH . R 5 HOH A 57 257 157 HOH HOH . R 5 HOH A 58 258 62 HOH HOH . R 5 HOH A 59 259 18 HOH HOH . R 5 HOH A 60 260 156 HOH HOH . R 5 HOH A 61 261 167 HOH HOH . R 5 HOH A 62 262 127 HOH HOH . R 5 HOH A 63 263 114 HOH HOH . R 5 HOH A 64 264 238 HOH HOH . R 5 HOH A 65 265 222 HOH HOH . R 5 HOH A 66 266 154 HOH HOH . R 5 HOH A 67 267 112 HOH HOH . R 5 HOH A 68 268 163 HOH HOH . R 5 HOH A 69 269 225 HOH HOH . R 5 HOH A 70 270 211 HOH HOH . R 5 HOH A 71 271 233 HOH HOH . R 5 HOH A 72 272 111 HOH HOH . R 5 HOH A 73 273 229 HOH HOH . R 5 HOH A 74 274 232 HOH HOH . R 5 HOH A 75 275 22 HOH HOH . R 5 HOH A 76 276 239 HOH HOH . R 5 HOH A 77 277 96 HOH HOH . R 5 HOH A 78 278 174 HOH HOH . R 5 HOH A 79 279 33 HOH HOH . R 5 HOH A 80 280 83 HOH HOH . R 5 HOH A 81 281 179 HOH HOH . R 5 HOH A 82 282 106 HOH HOH . R 5 HOH A 83 283 26 HOH HOH . R 5 HOH A 84 284 245 HOH HOH . R 5 HOH A 85 285 177 HOH HOH . R 5 HOH A 86 286 88 HOH HOH . S 5 HOH B 1 201 182 HOH HOH . S 5 HOH B 2 202 209 HOH HOH . S 5 HOH B 3 203 63 HOH HOH . S 5 HOH B 4 204 151 HOH HOH . S 5 HOH B 5 205 55 HOH HOH . S 5 HOH B 6 206 99 HOH HOH . S 5 HOH B 7 207 146 HOH HOH . S 5 HOH B 8 208 235 HOH HOH . S 5 HOH B 9 209 31 HOH HOH . S 5 HOH B 10 210 20 HOH HOH . S 5 HOH B 11 211 57 HOH HOH . S 5 HOH B 12 212 192 HOH HOH . S 5 HOH B 13 213 241 HOH HOH . S 5 HOH B 14 214 139 HOH HOH . S 5 HOH B 15 215 213 HOH HOH . S 5 HOH B 16 216 128 HOH HOH . S 5 HOH B 17 217 60 HOH HOH . S 5 HOH B 18 218 10 HOH HOH . S 5 HOH B 19 219 102 HOH HOH . S 5 HOH B 20 220 68 HOH HOH . S 5 HOH B 21 221 198 HOH HOH . S 5 HOH B 22 222 223 HOH HOH . S 5 HOH B 23 223 242 HOH HOH . S 5 HOH B 24 224 117 HOH HOH . S 5 HOH B 25 225 2 HOH HOH . S 5 HOH B 26 226 59 HOH HOH . S 5 HOH B 27 227 27 HOH HOH . S 5 HOH B 28 228 133 HOH HOH . S 5 HOH B 29 229 29 HOH HOH . S 5 HOH B 30 230 15 HOH HOH . S 5 HOH B 31 231 76 HOH HOH . S 5 HOH B 32 232 208 HOH HOH . S 5 HOH B 33 233 8 HOH HOH . S 5 HOH B 34 234 97 HOH HOH . S 5 HOH B 35 235 65 HOH HOH . S 5 HOH B 36 236 3 HOH HOH . S 5 HOH B 37 237 61 HOH HOH . S 5 HOH B 38 238 12 HOH HOH . S 5 HOH B 39 239 228 HOH HOH . S 5 HOH B 40 240 189 HOH HOH . S 5 HOH B 41 241 41 HOH HOH . S 5 HOH B 42 242 70 HOH HOH . S 5 HOH B 43 243 116 HOH HOH . S 5 HOH B 44 244 204 HOH HOH . S 5 HOH B 45 245 11 HOH HOH . S 5 HOH B 46 246 23 HOH HOH . S 5 HOH B 47 247 104 HOH HOH . S 5 HOH B 48 248 196 HOH HOH . S 5 HOH B 49 249 42 HOH HOH . S 5 HOH B 50 250 75 HOH HOH . S 5 HOH B 51 251 188 HOH HOH . S 5 HOH B 52 252 236 HOH HOH . S 5 HOH B 53 253 50 HOH HOH . S 5 HOH B 54 254 152 HOH HOH . S 5 HOH B 55 255 107 HOH HOH . S 5 HOH B 56 256 224 HOH HOH . S 5 HOH B 57 257 115 HOH HOH . S 5 HOH B 58 258 78 HOH HOH . S 5 HOH B 59 259 219 HOH HOH . S 5 HOH B 60 260 122 HOH HOH . S 5 HOH B 61 261 200 HOH HOH . S 5 HOH B 62 262 138 HOH HOH . S 5 HOH B 63 263 35 HOH HOH . S 5 HOH B 64 264 44 HOH HOH . S 5 HOH B 65 265 120 HOH HOH . S 5 HOH B 66 266 240 HOH HOH . S 5 HOH B 67 267 171 HOH HOH . S 5 HOH B 68 268 203 HOH HOH . S 5 HOH B 69 269 6 HOH HOH . S 5 HOH B 70 270 162 HOH HOH . S 5 HOH B 71 271 195 HOH HOH . S 5 HOH B 72 272 135 HOH HOH . S 5 HOH B 73 273 40 HOH HOH . S 5 HOH B 74 274 250 HOH HOH . S 5 HOH B 75 275 254 HOH HOH . S 5 HOH B 76 276 207 HOH HOH . S 5 HOH B 77 277 134 HOH HOH . S 5 HOH B 78 278 247 HOH HOH . S 5 HOH B 79 279 136 HOH HOH . S 5 HOH B 80 280 248 HOH HOH . S 5 HOH B 81 281 230 HOH HOH . S 5 HOH B 82 282 178 HOH HOH . S 5 HOH B 83 283 180 HOH HOH . S 5 HOH B 84 284 168 HOH HOH . S 5 HOH B 85 285 103 HOH HOH . S 5 HOH B 86 286 201 HOH HOH . S 5 HOH B 87 287 137 HOH HOH . S 5 HOH B 88 288 69 HOH HOH . T 5 HOH C 1 201 51 HOH HOH . T 5 HOH C 2 202 66 HOH HOH . T 5 HOH C 3 203 216 HOH HOH . T 5 HOH C 4 204 24 HOH HOH . T 5 HOH C 5 205 13 HOH HOH . T 5 HOH C 6 206 30 HOH HOH . T 5 HOH C 7 207 36 HOH HOH . T 5 HOH C 8 208 124 HOH HOH . T 5 HOH C 9 209 87 HOH HOH . T 5 HOH C 10 210 142 HOH HOH . T 5 HOH C 11 211 144 HOH HOH . T 5 HOH C 12 212 53 HOH HOH . T 5 HOH C 13 213 17 HOH HOH . T 5 HOH C 14 214 79 HOH HOH . T 5 HOH C 15 215 110 HOH HOH . T 5 HOH C 16 216 19 HOH HOH . T 5 HOH C 17 217 197 HOH HOH . T 5 HOH C 18 218 148 HOH HOH . T 5 HOH C 19 219 93 HOH HOH . T 5 HOH C 20 220 202 HOH HOH . T 5 HOH C 21 221 160 HOH HOH . T 5 HOH C 22 222 121 HOH HOH . T 5 HOH C 23 223 185 HOH HOH . T 5 HOH C 24 224 85 HOH HOH . T 5 HOH C 25 225 46 HOH HOH . T 5 HOH C 26 226 210 HOH HOH . T 5 HOH C 27 227 25 HOH HOH . T 5 HOH C 28 228 5 HOH HOH . T 5 HOH C 29 229 193 HOH HOH . T 5 HOH C 30 230 98 HOH HOH . T 5 HOH C 31 231 218 HOH HOH . T 5 HOH C 32 232 108 HOH HOH . T 5 HOH C 33 233 125 HOH HOH . T 5 HOH C 34 234 158 HOH HOH . T 5 HOH C 35 235 54 HOH HOH . T 5 HOH C 36 236 191 HOH HOH . T 5 HOH C 37 237 38 HOH HOH . T 5 HOH C 38 238 34 HOH HOH . T 5 HOH C 39 239 161 HOH HOH . T 5 HOH C 40 240 217 HOH HOH . T 5 HOH C 41 241 130 HOH HOH . T 5 HOH C 42 242 90 HOH HOH . T 5 HOH C 43 243 101 HOH HOH . T 5 HOH C 44 244 86 HOH HOH . T 5 HOH C 45 245 95 HOH HOH . T 5 HOH C 46 246 220 HOH HOH . T 5 HOH C 47 247 72 HOH HOH . T 5 HOH C 48 248 64 HOH HOH . T 5 HOH C 49 249 164 HOH HOH . T 5 HOH C 50 250 226 HOH HOH . T 5 HOH C 51 251 39 HOH HOH . T 5 HOH C 52 252 155 HOH HOH . T 5 HOH C 53 253 190 HOH HOH . T 5 HOH C 54 254 153 HOH HOH . T 5 HOH C 55 255 147 HOH HOH . T 5 HOH C 56 256 94 HOH HOH . T 5 HOH C 57 257 169 HOH HOH . T 5 HOH C 58 258 73 HOH HOH . T 5 HOH C 59 259 166 HOH HOH . T 5 HOH C 60 260 212 HOH HOH . T 5 HOH C 61 261 9 HOH HOH . T 5 HOH C 62 262 52 HOH HOH . T 5 HOH C 63 263 234 HOH HOH . T 5 HOH C 64 264 214 HOH HOH . T 5 HOH C 65 265 45 HOH HOH . T 5 HOH C 66 266 249 HOH HOH . T 5 HOH C 67 267 251 HOH HOH . T 5 HOH C 68 268 176 HOH HOH . T 5 HOH C 69 269 170 HOH HOH . T 5 HOH C 70 270 221 HOH HOH . T 5 HOH C 71 271 205 HOH HOH . T 5 HOH C 72 272 246 HOH HOH . T 5 HOH C 73 273 253 HOH HOH . T 5 HOH C 74 274 71 HOH HOH . T 5 HOH C 75 275 172 HOH HOH . T 5 HOH C 76 276 252 HOH HOH . T 5 HOH C 77 277 181 HOH HOH . T 5 HOH C 78 278 183 HOH HOH . T 5 HOH C 79 279 173 HOH HOH . T 5 HOH C 80 280 48 HOH HOH . T 5 HOH C 81 281 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUC . A . D 2 -1.64 9.435 -2.321 0.5 16.1 ? C1 FUC 101 A 1 HETATM 2 C C2 FUC . A . D 2 -0.445 8.496 -2.185 0.5 16.03 ? C2 FUC 101 A 1 HETATM 3 C C3 FUC . A . D 2 -0.403 7.913 -0.783 0.5 15.93 ? C3 FUC 101 A 1 HETATM 4 C C4 FUC . A . D 2 -1.72 7.213 -0.506 0.5 15.71 ? C4 FUC 101 A 1 HETATM 5 C C5 FUC . A . D 2 -2.863 8.209 -0.687 0.5 15.91 ? C5 FUC 101 A 1 HETATM 6 C C6 FUC . A . D 2 -4.209 7.557 -0.4 0.5 15.69 ? C6 FUC 101 A 1 HETATM 7 O O1 FUC . A . D 2 -1.487 10.523 -1.402 0.5 16.2 ? O1 FUC 101 A 1 HETATM 8 O O2 FUC . A . D 2 0.777 9.198 -2.442 0.5 16.16 ? O2 FUC 101 A 1 HETATM 9 O O3 FUC . A . D 2 0.701 7.01 -0.668 0.5 15.79 ? O3 FUC 101 A 1 HETATM 10 O O4 FUC . A . D 2 -1.869 6.11 -1.406 0.5 16 ? O4 FUC 101 A 1 HETATM 11 O O5 FUC . A . D 2 -2.851 8.738 -2.023 0.5 15.97 ? O5 FUC 101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #