data_6T9N # _model_server_result.job_id vNdNiqr0udF07mZMNXmMeA _model_server_result.datetime_utc '2025-04-02 02:14:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":801}' # _entry.id 6T9N # _exptl.entry_id 6T9N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T9N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 V N N ? 3 FA N N ? 3 QA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 804 NAG 2 n E NAG 2 E 2 NAG A 805 NAG 2 n F NAG 1 F 1 NAG B 804 NAG 2 n F NAG 2 F 2 NAG B 805 NAG 2 n G NAG 1 G 1 NAG C 804 NAG 2 n G NAG 2 G 2 NAG C 805 NAG 2 n H NAG 1 H 1 NAG D 804 NAG 2 n H NAG 2 H 2 NAG D 805 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 148 A CYS 331 1_555 A SG CYS 161 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 148 B CYS 331 1_555 B SG CYS 161 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 148 C CYS 331 1_555 C SG CYS 161 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 148 D CYS 331 1_555 D SG CYS 161 D CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 145 A ASN 328 1_555 J C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 179 A ASN 362 1_555 K C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 192 A ASN 375 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 B ND2 ASN 145 B ASN 328 1_555 W C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 B ND2 ASN 179 B ASN 362 1_555 X C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 B ND2 ASN 192 B ASN 375 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale7 C ND2 ASN 145 C ASN 328 1_555 GA C1 NAG . C NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 C ND2 ASN 179 C ASN 362 1_555 HA C1 NAG . C NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 C ND2 ASN 192 C ASN 375 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale10 D ND2 ASN 145 D ASN 328 1_555 RA C1 NAG . D NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale11 D ND2 ASN 179 D ASN 362 1_555 SA C1 NAG . D NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale12 D ND2 ASN 192 D ASN 375 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A O LEU 458 A LEU 641 1_555 U CA CA . A CA 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc2 U CA CA . A CA 815 1_555 B O LEU 458 B LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 U CA CA . A CA 815 1_555 C O LEU 458 C LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc4 U CA CA . A CA 815 1_555 D O LEU 458 D LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 6T9N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CLR A 1 801 801 CLR CLR . J 4 NAG A 1 802 802 NAG NAG . K 4 NAG A 1 803 803 NAG NAG . L 5 UMQ A 1 806 901 UMQ UMQ . M 5 UMQ A 1 807 1101 UMQ UMQ . N 5 UMQ A 1 808 1201 UMQ UMQ . O 5 UMQ A 1 809 1301 UMQ UMQ . P 5 UMQ A 1 810 1401 UMQ UMQ . Q 5 UMQ A 1 811 1501 UMQ UMQ . R 5 UMQ A 1 812 1601 UMQ UMQ . S 5 UMQ A 1 813 1701 UMQ UMQ . T 5 UMQ A 1 814 1501 UMQ UMQ . U 6 CA A 1 815 1 CA CA . V 3 CLR B 1 801 801 CLR CLR . W 4 NAG B 1 802 802 NAG NAG . X 4 NAG B 1 803 803 NAG NAG . Y 5 UMQ B 1 806 901 UMQ UMQ . Z 5 UMQ B 1 807 1101 UMQ UMQ . AA 5 UMQ B 1 808 1201 UMQ UMQ . BA 5 UMQ B 1 809 1301 UMQ UMQ . CA 5 UMQ B 1 810 1401 UMQ UMQ . DA 5 UMQ B 1 811 1601 UMQ UMQ . EA 5 UMQ B 1 812 1701 UMQ UMQ . FA 3 CLR C 1 801 801 CLR CLR . GA 4 NAG C 1 802 802 NAG NAG . HA 4 NAG C 1 803 803 NAG NAG . IA 5 UMQ C 1 806 901 UMQ UMQ . JA 5 UMQ C 1 807 1101 UMQ UMQ . KA 5 UMQ C 1 808 1201 UMQ UMQ . LA 5 UMQ C 1 809 1301 UMQ UMQ . MA 5 UMQ C 1 810 1401 UMQ UMQ . NA 5 UMQ C 1 811 1501 UMQ UMQ . OA 5 UMQ C 1 812 1601 UMQ UMQ . PA 5 UMQ C 1 813 1701 UMQ UMQ . QA 3 CLR D 1 801 801 CLR CLR . RA 4 NAG D 1 802 802 NAG NAG . SA 4 NAG D 1 803 803 NAG NAG . TA 5 UMQ D 1 806 901 UMQ UMQ . UA 5 UMQ D 1 807 1101 UMQ UMQ . VA 5 UMQ D 1 808 1201 UMQ UMQ . WA 5 UMQ D 1 809 1301 UMQ UMQ . XA 5 UMQ D 1 810 1401 UMQ UMQ . YA 5 UMQ D 1 811 1501 UMQ UMQ . ZA 5 UMQ D 1 812 1601 UMQ UMQ . AB 5 UMQ D 1 813 1701 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . V 3 120.726 88.196 95.934 1 33.76 ? C1 CLR 801 B 1 HETATM 2 C C2 CLR . . . V 3 120.842 87.86 97.39 1 33.76 ? C2 CLR 801 B 1 HETATM 3 C C3 CLR . . . V 3 120.437 89.059 98.2 1 33.76 ? C3 CLR 801 B 1 HETATM 4 C C4 CLR . . . V 3 118.961 89.357 97.907 1 33.76 ? C4 CLR 801 B 1 HETATM 5 C C5 CLR . . . V 3 118.714 89.484 96.437 1 33.76 ? C5 CLR 801 B 1 HETATM 6 C C6 CLR . . . V 3 117.858 90.4 96.027 1 33.76 ? C6 CLR 801 B 1 HETATM 7 C C7 CLR . . . V 3 117.668 90.735 94.598 1 33.76 ? C7 CLR 801 B 1 HETATM 8 C C8 CLR . . . V 3 117.939 89.539 93.709 1 33.76 ? C8 CLR 801 B 1 HETATM 9 C C9 CLR . . . V 3 119.264 88.88 94.076 1 33.76 ? C9 CLR 801 B 1 HETATM 10 C C10 CLR . . . V 3 119.28 88.427 95.549 1 33.76 ? C10 CLR 801 B 1 HETATM 11 C C11 CLR . . . V 3 119.565 87.71 93.15 1 33.76 ? C11 CLR 801 B 1 HETATM 12 C C12 CLR . . . V 3 119.581 88.117 91.699 1 33.76 ? C12 CLR 801 B 1 HETATM 13 C C13 CLR . . . V 3 118.296 88.863 91.292 1 33.76 ? C13 CLR 801 B 1 HETATM 14 C C14 CLR . . . V 3 118.095 90.037 92.279 1 33.76 ? C14 CLR 801 B 1 HETATM 15 C C15 CLR . . . V 3 116.946 90.815 91.655 1 33.76 ? C15 CLR 801 B 1 HETATM 16 C C16 CLR . . . V 3 117.257 90.719 90.147 1 33.76 ? C16 CLR 801 B 1 HETATM 17 C C17 CLR . . . V 3 118.352 89.634 89.954 1 33.76 ? C17 CLR 801 B 1 HETATM 18 C C18 CLR . . . V 3 117.054 87.956 91.297 1 33.76 ? C18 CLR 801 B 1 HETATM 19 C C19 CLR . . . V 3 118.459 87.152 95.755 1 33.76 ? C19 CLR 801 B 1 HETATM 20 C C20 CLR . . . V 3 118.149 88.762 88.667 1 33.76 ? C20 CLR 801 B 1 HETATM 21 C C21 CLR . . . V 3 119.486 88.289 88.096 1 33.76 ? C21 CLR 801 B 1 HETATM 22 C C22 CLR . . . V 3 117.388 89.506 87.562 1 33.76 ? C22 CLR 801 B 1 HETATM 23 C C23 CLR . . . V 3 116.946 88.514 86.487 1 33.76 ? C23 CLR 801 B 1 HETATM 24 C C24 CLR . . . V 3 117.397 88.969 85.103 1 33.76 ? C24 CLR 801 B 1 HETATM 25 C C25 CLR . . . V 3 116.757 88.1 84.005 1 33.76 ? C25 CLR 801 B 1 HETATM 26 C C26 CLR . . . V 3 117.171 88.62 82.635 1 33.76 ? C26 CLR 801 B 1 HETATM 27 C C27 CLR . . . V 3 117.179 86.646 84.15 1 33.76 ? C27 CLR 801 B 1 HETATM 28 O O1 CLR . . . V 3 120.587 88.676 99.526 1 33.76 ? O1 CLR 801 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #