data_6T9N # _model_server_result.job_id MUgLc-H4wcikjhVDdtVzzg _model_server_result.datetime_utc '2024-10-15 11:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"SA","auth_seq_id":803}' # _entry.id 6T9N # _exptl.entry_id 6T9N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T9N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 W N N ? 4 X N N ? 4 GA N N ? 4 HA N N ? 4 RA N N ? 4 SA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG A 804 NAG 2 n E NAG 2 E 2 NAG A 805 NAG 2 n F NAG 1 F 1 NAG B 804 NAG 2 n F NAG 2 F 2 NAG B 805 NAG 2 n G NAG 1 G 1 NAG C 804 NAG 2 n G NAG 2 G 2 NAG C 805 NAG 2 n H NAG 1 H 1 NAG D 804 NAG 2 n H NAG 2 H 2 NAG D 805 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 148 A CYS 331 1_555 A SG CYS 161 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 148 B CYS 331 1_555 B SG CYS 161 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 C SG CYS 148 C CYS 331 1_555 C SG CYS 161 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 D SG CYS 148 D CYS 331 1_555 D SG CYS 161 D CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 145 A ASN 328 1_555 J C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 179 A ASN 362 1_555 K C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 192 A ASN 375 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale4 B ND2 ASN 145 B ASN 328 1_555 W C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 B ND2 ASN 179 B ASN 362 1_555 X C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale6 B ND2 ASN 192 B ASN 375 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale7 C ND2 ASN 145 C ASN 328 1_555 GA C1 NAG . C NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 C ND2 ASN 179 C ASN 362 1_555 HA C1 NAG . C NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 C ND2 ASN 192 C ASN 375 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale10 D ND2 ASN 145 D ASN 328 1_555 RA C1 NAG . D NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale11 D ND2 ASN 179 D ASN 362 1_555 SA C1 NAG . D NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale12 D ND2 ASN 192 D ASN 375 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale14 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A O LEU 458 A LEU 641 1_555 U CA CA . A CA 815 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc2 U CA CA . A CA 815 1_555 B O LEU 458 B LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 U CA CA . A CA 815 1_555 C O LEU 458 C LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc4 U CA CA . A CA 815 1_555 D O LEU 458 D LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6T9N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 CLR A 1 801 801 CLR CLR . J 4 NAG A 1 802 802 NAG NAG . K 4 NAG A 1 803 803 NAG NAG . L 5 UMQ A 1 806 901 UMQ UMQ . M 5 UMQ A 1 807 1101 UMQ UMQ . N 5 UMQ A 1 808 1201 UMQ UMQ . O 5 UMQ A 1 809 1301 UMQ UMQ . P 5 UMQ A 1 810 1401 UMQ UMQ . Q 5 UMQ A 1 811 1501 UMQ UMQ . R 5 UMQ A 1 812 1601 UMQ UMQ . S 5 UMQ A 1 813 1701 UMQ UMQ . T 5 UMQ A 1 814 1501 UMQ UMQ . U 6 CA A 1 815 1 CA CA . V 3 CLR B 1 801 801 CLR CLR . W 4 NAG B 1 802 802 NAG NAG . X 4 NAG B 1 803 803 NAG NAG . Y 5 UMQ B 1 806 901 UMQ UMQ . Z 5 UMQ B 1 807 1101 UMQ UMQ . AA 5 UMQ B 1 808 1201 UMQ UMQ . BA 5 UMQ B 1 809 1301 UMQ UMQ . CA 5 UMQ B 1 810 1401 UMQ UMQ . DA 5 UMQ B 1 811 1601 UMQ UMQ . EA 5 UMQ B 1 812 1701 UMQ UMQ . FA 3 CLR C 1 801 801 CLR CLR . GA 4 NAG C 1 802 802 NAG NAG . HA 4 NAG C 1 803 803 NAG NAG . IA 5 UMQ C 1 806 901 UMQ UMQ . JA 5 UMQ C 1 807 1101 UMQ UMQ . KA 5 UMQ C 1 808 1201 UMQ UMQ . LA 5 UMQ C 1 809 1301 UMQ UMQ . MA 5 UMQ C 1 810 1401 UMQ UMQ . NA 5 UMQ C 1 811 1501 UMQ UMQ . OA 5 UMQ C 1 812 1601 UMQ UMQ . PA 5 UMQ C 1 813 1701 UMQ UMQ . QA 3 CLR D 1 801 801 CLR CLR . RA 4 NAG D 1 802 802 NAG NAG . SA 4 NAG D 1 803 803 NAG NAG . TA 5 UMQ D 1 806 901 UMQ UMQ . UA 5 UMQ D 1 807 1101 UMQ UMQ . VA 5 UMQ D 1 808 1201 UMQ UMQ . WA 5 UMQ D 1 809 1301 UMQ UMQ . XA 5 UMQ D 1 810 1401 UMQ UMQ . YA 5 UMQ D 1 811 1501 UMQ UMQ . ZA 5 UMQ D 1 812 1601 UMQ UMQ . AB 5 UMQ D 1 813 1701 UMQ UMQ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . SA 4 50.951 82.416 140.903 1 58.5 ? C1 NAG 803 D 1 HETATM 2 C C2 NAG . . . SA 4 52.417 81.894 140.997 1 58.5 ? C2 NAG 803 D 1 HETATM 3 C C3 NAG . . . SA 4 53.258 82.791 141.931 1 58.5 ? C3 NAG 803 D 1 HETATM 4 C C4 NAG . . . SA 4 53.064 84.274 141.639 1 58.5 ? C4 NAG 803 D 1 HETATM 5 C C5 NAG . . . SA 4 51.582 84.606 141.643 1 58.5 ? C5 NAG 803 D 1 HETATM 6 C C6 NAG . . . SA 4 51.291 86.054 141.332 1 58.5 ? C6 NAG 803 D 1 HETATM 7 C C7 NAG . . . SA 4 53.468 79.688 141.397 1 58.5 ? C7 NAG 803 D 1 HETATM 8 C C8 NAG . . . SA 4 53.262 78.317 141.958 1 58.5 ? C8 NAG 803 D 1 HETATM 9 N N2 NAG . . . SA 4 52.419 80.518 141.48 1 58.5 ? N2 NAG 803 D 1 HETATM 10 O O3 NAG . . . SA 4 54.637 82.483 141.772 1 58.5 ? O3 NAG 803 D 1 HETATM 11 O O4 NAG . . . SA 4 53.719 85.045 142.638 1 58.5 ? O4 NAG 803 D 1 HETATM 12 O O5 NAG . . . SA 4 50.951 83.824 140.626 1 58.5 ? O5 NAG 803 D 1 HETATM 13 O O6 NAG . . . SA 4 49.981 86.417 141.745 1 58.5 ? O6 NAG 803 D 1 HETATM 14 O O7 NAG . . . SA 4 54.528 80.023 140.874 1 58.5 ? O7 NAG 803 D 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #