data_6T9P
#
_model_server_result.job_id            MTroGwVUs6U9gQTgyXRO6g 
_model_server_result.datetime_utc      '2024-12-21 18:09:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t9p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":607}' 
#
_entry.id    6T9P 
#
_exptl.entry_id    6T9P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              367.405 
_entity.id                          7 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,E)-2-(hydroxyimino)-N-(3-(4-((2-methyl-1H-imidazol-1-yl)methyl)-1H-1,2,3-triazol-1-yl)-1-phenylpropyl)acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6T9P 
_cell.length_a            154.14 
_cell.length_b            154.14 
_cell.length_c            127.52 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T9P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA octameric 8 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 1 
A,B,C,D,E,F,G,H,I,J,K,L 2 1,2,3,4,5,6,7,8 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 308.28 308.28 0 
3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 308.28 0 0 
4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 308.28 0 
5 'crystal symmetry operation' 5_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 308.28 0 127.52 
6 'crystal symmetry operation' 6_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 308.28 127.52 
7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 127.52 
8 'crystal symmetry operation' 8_776 -y+2,-x+2,-z+1 0 -1 0 -1 0 0 0 0 -1 308.28 308.28 127.52 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 1 TGY NAG C2 O2 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG B 1 NAG 
2 n B FUC 2 B 2 FUC B 2 FUC 
2 n C NAG 1 C 1 NAG C 1 NAG 
2 n C FUC 2 C 2 FUC C 2 FUC 
3 n D NAG 1 D 1 NAG D 1 NAG 
3 n D NAG 2 D 2 NAG D 2 NAG 
3 n D TGY 3 D 3 TGY D 3 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale8 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 D O6 NAG . D NAG 1 1_555 D C2 TGY . D TGY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
#
_chem_comp.formula           'C18 H21 N7 O2' 
_chem_comp.formula_weight    367.405 
_chem_comp.id                MXB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,E)-2-(hydroxyimino)-N-(3-(4-((2-methyl-1H-imidazol-1-yl)methyl)-1H-1,2,3-triazol-1-yl)-1-phenylpropyl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (2~{E})-2-hydroxyimino-~{N}-[(1~{R})-3-[4-[(2-methylimidazol-1-yl)methyl]-1,2,3-triazol-1-yl]-1-phenyl-propyl]ethanamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C23 MXB doub 273 n y 
C24 C25 MXB sing 274 n y 
C23 C22 MXB sing 275 n y 
C25 C20 MXB doub 276 n y 
C22 C21 MXB doub 277 n y 
C01 C02 MXB sing 278 n n 
C20 C21 MXB sing 279 n y 
C20 C13 MXB sing 280 n n 
O16 C15 MXB doub 281 n n 
C15 C17 MXB sing 282 n n 
C15 N14 MXB sing 283 n n 
C13 N14 MXB sing 284 n n 
C13 C12 MXB sing 285 n n 
C07 N06 MXB sing 286 n n 
C07 C08 MXB sing 287 n n 
C02 N06 MXB sing 288 n y 
C02 N03 MXB doub 289 n y 
C17 N18 MXB doub 290 e n 
N06 C05 MXB sing 291 n y 
C08 C09 MXB doub 292 n y 
C08 N27 MXB sing 293 n y 
N03 C04 MXB sing 294 n y 
C09 N10 MXB sing 295 n y 
C12 C11 MXB sing 296 n n 
N18 O19 MXB sing 297 n n 
N27 N26 MXB doub 298 n y 
C05 C04 MXB doub 299 n y 
N10 C11 MXB sing 300 n n 
N10 N26 MXB sing 301 n y 
C11 H1 MXB sing 302 n n 
C11 H2 MXB sing 303 n n 
C17 H3 MXB sing 304 n n 
C21 H4 MXB sing 305 n n 
C22 H5 MXB sing 306 n n 
C23 H6 MXB sing 307 n n 
C25 H7 MXB sing 308 n n 
C01 H8 MXB sing 309 n n 
C01 H9 MXB sing 310 n n 
C01 H10 MXB sing 311 n n 
C04 H11 MXB sing 312 n n 
C05 H12 MXB sing 313 n n 
C07 H13 MXB sing 314 n n 
C07 H14 MXB sing 315 n n 
C09 H15 MXB sing 316 n n 
C12 H16 MXB sing 317 n n 
C12 H17 MXB sing 318 n n 
C13 H18 MXB sing 319 n n 
C24 H19 MXB sing 320 n n 
N14 H20 MXB sing 321 n n 
O19 H21 MXB sing 322 n n 
#
_atom_sites.entry_id                     6T9P 
_atom_sites.fract_transf_matrix[1][1]    0.006488 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 GOL A 1 601 601 GOL GOL . 
F 5 NAG A 1 602 605 NAG NAG . 
G 5 NAG A 1 603 608 NAG NAG . 
H 5 NAG A 1 604 612 NAG NAG . 
I 6 SO4 A 1 605 613 SO4 SO4 . 
J 6 SO4 A 1 606 614 SO4 SO4 . 
K 7 MXB A 1 607 757 MXB MXB . 
L 8 HOH A 1 701 708 HOH HOH . 
L 8 HOH A 2 702 702 HOH HOH . 
L 8 HOH A 3 703 716 HOH HOH . 
L 8 HOH A 4 704 713 HOH HOH . 
L 8 HOH A 5 705 724 HOH HOH . 
L 8 HOH A 6 706 721 HOH HOH . 
L 8 HOH A 7 707 750 HOH HOH . 
L 8 HOH A 8 708 703 HOH HOH . 
L 8 HOH A 9 709 718 HOH HOH . 
L 8 HOH A 10 710 701 HOH HOH . 
L 8 HOH A 11 711 706 HOH HOH . 
L 8 HOH A 12 712 710 HOH HOH . 
L 8 HOH A 13 713 705 HOH HOH . 
L 8 HOH A 14 714 728 HOH HOH . 
L 8 HOH A 15 715 704 HOH HOH . 
L 8 HOH A 16 716 715 HOH HOH . 
L 8 HOH A 17 717 711 HOH HOH . 
L 8 HOH A 18 718 739 HOH HOH . 
L 8 HOH A 19 719 723 HOH HOH . 
L 8 HOH A 20 720 707 HOH HOH . 
L 8 HOH A 21 721 712 HOH HOH . 
L 8 HOH A 22 722 714 HOH HOH . 
L 8 HOH A 23 723 720 HOH HOH . 
L 8 HOH A 24 724 726 HOH HOH . 
L 8 HOH A 25 725 709 HOH HOH . 
L 8 HOH A 26 726 719 HOH HOH . 
L 8 HOH A 27 727 736 HOH HOH . 
L 8 HOH A 28 728 729 HOH HOH . 
L 8 HOH A 29 729 742 HOH HOH . 
L 8 HOH A 30 730 717 HOH HOH . 
L 8 HOH A 31 731 733 HOH HOH . 
L 8 HOH A 32 732 732 HOH HOH . 
L 8 HOH A 33 733 731 HOH HOH . 
L 8 HOH A 34 734 734 HOH HOH . 
L 8 HOH A 35 735 727 HOH HOH . 
L 8 HOH A 36 736 737 HOH HOH . 
L 8 HOH A 37 737 735 HOH HOH . 
L 8 HOH A 38 738 725 HOH HOH . 
L 8 HOH A 39 739 730 HOH HOH . 
L 8 HOH A 40 740 722 HOH HOH . 
L 8 HOH A 41 741 741 HOH HOH . 
L 8 HOH A 42 742 743 HOH HOH . 
L 8 HOH A 43 743 738 HOH HOH . 
L 8 HOH A 44 744 747 HOH HOH . 
L 8 HOH A 45 745 745 HOH HOH . 
L 8 HOH A 46 746 740 HOH HOH . 
L 8 HOH A 47 747 746 HOH HOH . 
L 8 HOH A 48 748 744 HOH HOH . 
L 8 HOH A 49 749 749 HOH HOH . 
L 8 HOH A 50 750 751 HOH HOH . 
L 8 HOH A 51 751 748 HOH HOH . 
L 8 HOH A 52 752 753 HOH HOH . 
L 8 HOH A 53 753 755 HOH HOH . 
L 8 HOH A 54 754 752 HOH HOH . 
L 8 HOH A 55 755 756 HOH HOH . 
L 8 HOH A 56 756 754 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N10 MXB . . . K 7 134.191 111.625 41.582 1 91.43 ? N10 MXB 607 A 1 
HETATM 2 C C11 MXB . . . K 7 134.433 110.167 42.057 1 84.73 ? C11 MXB 607 A 1 
HETATM 3 C C17 MXB . . . K 7 138.589 112.485 39.81 1 82.95 ? C17 MXB 607 A 1 
HETATM 4 C C21 MXB . . . K 7 135.196 107.431 38.607 1 91.38 ? C21 MXB 607 A 1 
HETATM 5 C C22 MXB . . . K 7 135.215 106.482 37.574 1 94.85 ? C22 MXB 607 A 1 
HETATM 6 C C23 MXB . . . K 7 135.569 106.844 36.26 1 89.29 ? C23 MXB 607 A 1 
HETATM 7 C C25 MXB . . . K 7 135.882 109.135 37.059 1 88.44 ? C25 MXB 607 A 1 
HETATM 8 C C01 MXB . . . K 7 133.345 117.417 38.2 1 70.54 ? C01 MXB 607 A 1 
HETATM 9 C C02 MXB . . . K 7 132.98 117.175 39.62 1 72.76 ? C02 MXB 607 A 1 
HETATM 10 C C04 MXB . . . K 7 132.484 117.504 41.766 1 74.45 ? C04 MXB 607 A 1 
HETATM 11 C C05 MXB . . . K 7 132.416 116.136 41.576 1 73.13 ? C05 MXB 607 A 1 
HETATM 12 C C07 MXB . . . K 7 132.789 114.55 39.603 1 76.71 ? C07 MXB 607 A 1 
HETATM 13 C C08 MXB . . . K 7 133.466 113.491 40.489 1 88.33 ? C08 MXB 607 A 1 
HETATM 14 C C09 MXB . . . K 7 133.284 112.094 40.565 1 91.23 ? C09 MXB 607 A 1 
HETATM 15 C C12 MXB . . . K 7 134.915 109.156 40.953 1 87.98 ? C12 MXB 607 A 1 
HETATM 16 C C13 MXB . . . K 7 135.488 109.843 39.588 1 96.41 ? C13 MXB 607 A 1 
HETATM 17 C C15 MXB . . . K 7 137.198 111.815 39.415 1 93.91 ? C15 MXB 607 A 1 
HETATM 18 C C24 MXB . . . K 7 135.904 108.179 36.016 1 83.53 ? C24 MXB 607 A 1 
HETATM 19 N N03 MXB . . . K 7 132.837 118.15 40.553 1 76.37 ? N03 MXB 607 A 1 
HETATM 20 N N06 MXB . . . K 7 132.725 115.902 40.202 1 78.02 ? N06 MXB 607 A 1 
HETATM 21 N N14 MXB . . . K 7 136.81 110.559 39.902 1 91.25 ? N14 MXB 607 A 1 
HETATM 22 N N18 MXB . . . K 7 138.689 113.148 41.001 1 83.08 ? N18 MXB 607 A 1 
HETATM 23 N N27 MXB . . . K 7 134.46 113.794 41.471 1 91.5 ? N27 MXB 607 A 1 
HETATM 24 O O16 MXB . . . K 7 136.416 112.415 38.65 1 85.7 ? O16 MXB 607 A 1 
HETATM 25 C C20 MXB . . . K 7 135.53 108.796 38.392 1 97.93 ? C20 MXB 607 A 1 
HETATM 26 N N26 MXB . . . K 7 134.866 112.726 42.072 1 89.06 ? N26 MXB 607 A 1 
HETATM 27 O O19 MXB . . . K 7 139.887 113.721 41.332 1 74.12 ? O19 MXB 607 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           27 
#