data_6T9S
#
_model_server_result.job_id            61wnTWLaQhzqwWw2tRUDtw 
_model_server_result.datetime_utc      '2024-12-21 18:22:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    6T9S 
#
_exptl.entry_id    6T9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6T9S 
_cell.length_a            154.14 
_cell.length_b            154.14 
_cell.length_c            127.52 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 
2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 3 3 1 FUC NAG C5 H5 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 802 NAG 
2 n B FUC 2 B 2 FUC A 803 FUC 
2 n C NAG 1 C 1 NAG A 805 NAG 
2 n C FUC 2 C 2 FUC A 806 FUC 
3 n D NAG 1 D 1 NAG A 808 NAG 
3 n D NAG 2 D 2 NAG A 809 NAG 
3 n D FUC 3 D 3 FUC A 810 FUC 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 F C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? 
covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 H C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale7 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale8 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale10 D O6 NAG . D NAG 1 1_555 D C5 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 323 n n 
C1 O1 NAG sing 324 n n 
C1 O5 NAG sing 325 n n 
C1 H1 NAG sing 326 n n 
C2 C3 NAG sing 327 n n 
C2 N2 NAG sing 328 n n 
C2 H2 NAG sing 329 n n 
C3 C4 NAG sing 330 n n 
C3 O3 NAG sing 331 n n 
C3 H3 NAG sing 332 n n 
C4 C5 NAG sing 333 n n 
C4 O4 NAG sing 334 n n 
C4 H4 NAG sing 335 n n 
C5 C6 NAG sing 336 n n 
C5 O5 NAG sing 337 n n 
C5 H5 NAG sing 338 n n 
C6 O6 NAG sing 339 n n 
C6 H61 NAG sing 340 n n 
C6 H62 NAG sing 341 n n 
C7 C8 NAG sing 342 n n 
C7 N2 NAG sing 343 n n 
C7 O7 NAG doub 344 n n 
C8 H81 NAG sing 345 n n 
C8 H82 NAG sing 346 n n 
C8 H83 NAG sing 347 n n 
N2 HN2 NAG sing 348 n n 
O1 HO1 NAG sing 349 n n 
O3 HO3 NAG sing 350 n n 
O4 HO4 NAG sing 351 n n 
O6 HO6 NAG sing 352 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6T9S 
_atom_sites.fract_transf_matrix[1][1]    0.006488 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007842 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 GOL A 1 601 601 GOL GOL . 
F 5 NAG A 1 602 804 NAG NAG . 
G 5 NAG A 1 603 807 NAG NAG . 
H 5 NAG A 1 604 811 NAG NAG . 
I 6 MXK A 1 605 901 MXK G3S . 
J 7 SO4 A 1 606 1 SO4 SO4 . 
K 7 SO4 A 1 607 2 SO4 SO4 . 
L 8 HOH A 1 701 6 HOH HOH . 
L 8 HOH A 2 702 15 HOH HOH . 
L 8 HOH A 3 703 14 HOH HOH . 
L 8 HOH A 4 704 17 HOH HOH . 
L 8 HOH A 5 705 23 HOH HOH . 
L 8 HOH A 6 706 28 HOH HOH . 
L 8 HOH A 7 707 20 HOH HOH . 
L 8 HOH A 8 708 12 HOH HOH . 
L 8 HOH A 9 709 16 HOH HOH . 
L 8 HOH A 10 710 22 HOH HOH . 
L 8 HOH A 11 711 58 HOH HOH . 
L 8 HOH A 12 712 3 HOH HOH . 
L 8 HOH A 13 713 32 HOH HOH . 
L 8 HOH A 14 714 9 HOH HOH . 
L 8 HOH A 15 715 44 HOH HOH . 
L 8 HOH A 16 716 46 HOH HOH . 
L 8 HOH A 17 717 19 HOH HOH . 
L 8 HOH A 18 718 37 HOH HOH . 
L 8 HOH A 19 719 11 HOH HOH . 
L 8 HOH A 20 720 13 HOH HOH . 
L 8 HOH A 21 721 18 HOH HOH . 
L 8 HOH A 22 722 30 HOH HOH . 
L 8 HOH A 23 723 4 HOH HOH . 
L 8 HOH A 24 724 21 HOH HOH . 
L 8 HOH A 25 725 39 HOH HOH . 
L 8 HOH A 26 726 31 HOH HOH . 
L 8 HOH A 27 727 10 HOH HOH . 
L 8 HOH A 28 728 57 HOH HOH . 
L 8 HOH A 29 729 36 HOH HOH . 
L 8 HOH A 30 730 2 HOH HOH . 
L 8 HOH A 31 731 29 HOH HOH . 
L 8 HOH A 32 732 26 HOH HOH . 
L 8 HOH A 33 733 33 HOH HOH . 
L 8 HOH A 34 734 7 HOH HOH . 
L 8 HOH A 35 735 41 HOH HOH . 
L 8 HOH A 36 736 55 HOH HOH . 
L 8 HOH A 37 737 43 HOH HOH . 
L 8 HOH A 38 738 5 HOH HOH . 
L 8 HOH A 39 739 48 HOH HOH . 
L 8 HOH A 40 740 42 HOH HOH . 
L 8 HOH A 41 741 38 HOH HOH . 
L 8 HOH A 42 742 53 HOH HOH . 
L 8 HOH A 43 743 8 HOH HOH . 
L 8 HOH A 44 744 1 HOH HOH . 
L 8 HOH A 45 745 52 HOH HOH . 
L 8 HOH A 46 746 47 HOH HOH . 
L 8 HOH A 47 747 56 HOH HOH . 
L 8 HOH A 48 748 40 HOH HOH . 
L 8 HOH A 49 749 50 HOH HOH . 
L 8 HOH A 50 750 24 HOH HOH . 
L 8 HOH A 51 751 49 HOH HOH . 
L 8 HOH A 52 752 34 HOH HOH . 
L 8 HOH A 53 753 35 HOH HOH . 
L 8 HOH A 54 754 51 HOH HOH . 
L 8 HOH A 55 755 54 HOH HOH . 
L 8 HOH A 56 756 45 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . F 5 135.311 148.937 27.152 1 92.45 ? C1 NAG 602 A 1 
HETATM 2 C C2 NAG . . . F 5 135.58 149.991 26.06 1 94.28 ? C2 NAG 602 A 1 
HETATM 3 C C3 NAG . . . F 5 137.086 150.161 25.847 1 100.98 ? C3 NAG 602 A 1 
HETATM 4 C C4 NAG . . . F 5 137.785 150.48 27.161 1 103.82 ? C4 NAG 602 A 1 
HETATM 5 C C5 NAG . . . F 5 137.491 149.376 28.175 1 103.36 ? C5 NAG 602 A 1 
HETATM 6 C C6 NAG . . . F 5 138.113 149.625 29.533 1 106.77 ? C6 NAG 602 A 1 
HETATM 7 C C7 NAG . . . F 5 133.656 149.877 24.519 1 92.38 ? C7 NAG 602 A 1 
HETATM 8 C C8 NAG . . . F 5 133.191 149.422 23.169 1 89.36 ? C8 NAG 602 A 1 
HETATM 9 N N2 NAG . . . F 5 134.937 149.622 24.807 1 94.05 ? N2 NAG 602 A 1 
HETATM 10 O O3 NAG . . . F 5 137.337 151.182 24.888 1 103.87 ? O3 NAG 602 A 1 
HETATM 11 O O4 NAG . . . F 5 139.189 150.613 26.956 1 93 ? O4 NAG 602 A 1 
HETATM 12 O O5 NAG . . . F 5 136.07 149.275 28.37 1 94.43 ? O5 NAG 602 A 1 
HETATM 13 O O6 NAG . . . F 5 139.397 150.229 29.427 1 114.57 ? O6 NAG 602 A 1 
HETATM 14 O O7 NAG . . . F 5 132.908 150.449 25.309 1 89.36 ? O7 NAG 602 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#