data_6T9V # _model_server_result.job_id fxzUmBNPiGwjUcsjCGBZqQ _model_server_result.datetime_utc '2024-12-26 15:59:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6T9V # _exptl.entry_id 6T9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T9V _cell.length_a 55.464 _cell.length_b 55.464 _cell.length_c 109.142 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 22 1_555 A SG CYS 160 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 48 A CYS 42 1_555 A SG CYS 64 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 132 A CYS 128 1_555 A SG CYS 233 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 139 A CYS 136 1_555 A SG CYS 206 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 171 A CYS 168 1_555 A SG CYS 185 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 A SG CYS 196 A CYS 191 1_555 A SG CYS 220 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OE1 GLU 75 A GLU 70 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 A O ASN 77 A ASN 72 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc3 A O VAL 80 A VAL 75 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc4 A OE2 GLU 85 A GLU 80 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 E CA CA . A CA 304 1_555 G O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc6 E CA CA . A CA 304 1_555 G O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6T9V _atom_sites.fract_transf_matrix[1][1] 0.01803 _atom_sites.fract_transf_matrix[1][2] 0.010409 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TFA A 1 301 301 TFA TFA . C 3 DMS A 1 302 4 DMS DMS . D 3 DMS A 1 303 6 DMS DMS . E 4 CA A 1 304 1 CA CA . F 5 MXH A 1 305 1 MXH 492 . G 6 HOH A 1 401 307 HOH HOH . G 6 HOH A 2 402 299 HOH HOH . G 6 HOH A 3 403 28 HOH HOH . G 6 HOH A 4 404 55 HOH HOH . G 6 HOH A 5 405 273 HOH HOH . G 6 HOH A 6 406 137 HOH HOH . G 6 HOH A 7 407 214 HOH HOH . G 6 HOH A 8 408 7 HOH HOH . G 6 HOH A 9 409 127 HOH HOH . G 6 HOH A 10 410 108 HOH HOH . G 6 HOH A 11 411 103 HOH HOH . G 6 HOH A 12 412 27 HOH HOH . G 6 HOH A 13 413 301 HOH HOH . G 6 HOH A 14 414 10 HOH HOH . G 6 HOH A 15 415 158 HOH HOH . G 6 HOH A 16 416 155 HOH HOH . G 6 HOH A 17 417 83 HOH HOH . G 6 HOH A 18 418 146 HOH HOH . G 6 HOH A 19 419 255 HOH HOH . G 6 HOH A 20 420 259 HOH HOH . G 6 HOH A 21 421 49 HOH HOH . G 6 HOH A 22 422 215 HOH HOH . G 6 HOH A 23 423 182 HOH HOH . G 6 HOH A 24 424 97 HOH HOH . G 6 HOH A 25 425 35 HOH HOH . G 6 HOH A 26 426 82 HOH HOH . G 6 HOH A 27 427 324 HOH HOH . G 6 HOH A 28 428 304 HOH HOH . G 6 HOH A 29 429 296 HOH HOH . G 6 HOH A 30 430 106 HOH HOH . G 6 HOH A 31 431 317 HOH HOH . G 6 HOH A 32 432 279 HOH HOH . G 6 HOH A 33 433 67 HOH HOH . G 6 HOH A 34 434 184 HOH HOH . G 6 HOH A 35 435 210 HOH HOH . G 6 HOH A 36 436 59 HOH HOH . G 6 HOH A 37 437 147 HOH HOH . G 6 HOH A 38 438 148 HOH HOH . G 6 HOH A 39 439 163 HOH HOH . G 6 HOH A 40 440 111 HOH HOH . G 6 HOH A 41 441 16 HOH HOH . G 6 HOH A 42 442 223 HOH HOH . G 6 HOH A 43 443 129 HOH HOH . G 6 HOH A 44 444 64 HOH HOH . G 6 HOH A 45 445 238 HOH HOH . G 6 HOH A 46 446 271 HOH HOH . G 6 HOH A 47 447 167 HOH HOH . G 6 HOH A 48 448 73 HOH HOH . G 6 HOH A 49 449 220 HOH HOH . G 6 HOH A 50 450 143 HOH HOH . G 6 HOH A 51 451 74 HOH HOH . G 6 HOH A 52 452 101 HOH HOH . G 6 HOH A 53 453 22 HOH HOH . G 6 HOH A 54 454 166 HOH HOH . G 6 HOH A 55 455 292 HOH HOH . G 6 HOH A 56 456 14 HOH HOH . G 6 HOH A 57 457 195 HOH HOH . G 6 HOH A 58 458 2 HOH HOH . G 6 HOH A 59 459 65 HOH HOH . G 6 HOH A 60 460 323 HOH HOH . G 6 HOH A 61 461 24 HOH HOH . G 6 HOH A 62 462 287 HOH HOH . G 6 HOH A 63 463 156 HOH HOH . G 6 HOH A 64 464 322 HOH HOH . G 6 HOH A 65 465 15 HOH HOH . G 6 HOH A 66 466 57 HOH HOH . G 6 HOH A 67 467 42 HOH HOH . G 6 HOH A 68 468 120 HOH HOH . G 6 HOH A 69 469 6 HOH HOH . G 6 HOH A 70 470 172 HOH HOH . G 6 HOH A 71 471 20 HOH HOH . G 6 HOH A 72 472 18 HOH HOH . G 6 HOH A 73 473 113 HOH HOH . G 6 HOH A 74 474 125 HOH HOH . G 6 HOH A 75 475 139 HOH HOH . G 6 HOH A 76 476 164 HOH HOH . G 6 HOH A 77 477 3 HOH HOH . G 6 HOH A 78 478 118 HOH HOH . G 6 HOH A 79 479 312 HOH HOH . G 6 HOH A 80 480 43 HOH HOH . G 6 HOH A 81 481 119 HOH HOH . G 6 HOH A 82 482 63 HOH HOH . G 6 HOH A 83 483 96 HOH HOH . G 6 HOH A 84 484 32 HOH HOH . G 6 HOH A 85 485 25 HOH HOH . G 6 HOH A 86 486 21 HOH HOH . G 6 HOH A 87 487 275 HOH HOH . G 6 HOH A 88 488 11 HOH HOH . G 6 HOH A 89 489 105 HOH HOH . G 6 HOH A 90 490 58 HOH HOH . G 6 HOH A 91 491 222 HOH HOH . G 6 HOH A 92 492 62 HOH HOH . G 6 HOH A 93 493 70 HOH HOH . G 6 HOH A 94 494 278 HOH HOH . G 6 HOH A 95 495 185 HOH HOH . G 6 HOH A 96 496 90 HOH HOH . G 6 HOH A 97 497 77 HOH HOH . G 6 HOH A 98 498 52 HOH HOH . G 6 HOH A 99 499 219 HOH HOH . G 6 HOH A 100 500 8 HOH HOH . G 6 HOH A 101 501 23 HOH HOH . G 6 HOH A 102 502 34 HOH HOH . G 6 HOH A 103 503 173 HOH HOH . G 6 HOH A 104 504 41 HOH HOH . G 6 HOH A 105 505 177 HOH HOH . G 6 HOH A 106 506 19 HOH HOH . G 6 HOH A 107 507 107 HOH HOH . G 6 HOH A 108 508 263 HOH HOH . G 6 HOH A 109 509 60 HOH HOH . G 6 HOH A 110 510 122 HOH HOH . G 6 HOH A 111 511 133 HOH HOH . G 6 HOH A 112 512 79 HOH HOH . G 6 HOH A 113 513 40 HOH HOH . G 6 HOH A 114 514 135 HOH HOH . G 6 HOH A 115 515 17 HOH HOH . G 6 HOH A 116 516 81 HOH HOH . G 6 HOH A 117 517 45 HOH HOH . G 6 HOH A 118 518 225 HOH HOH . G 6 HOH A 119 519 9 HOH HOH . G 6 HOH A 120 520 47 HOH HOH . G 6 HOH A 121 521 224 HOH HOH . G 6 HOH A 122 522 121 HOH HOH . G 6 HOH A 123 523 54 HOH HOH . G 6 HOH A 124 524 39 HOH HOH . G 6 HOH A 125 525 256 HOH HOH . G 6 HOH A 126 526 298 HOH HOH . G 6 HOH A 127 527 264 HOH HOH . G 6 HOH A 128 528 109 HOH HOH . G 6 HOH A 129 529 218 HOH HOH . G 6 HOH A 130 530 80 HOH HOH . G 6 HOH A 131 531 196 HOH HOH . G 6 HOH A 132 532 176 HOH HOH . G 6 HOH A 133 533 112 HOH HOH . G 6 HOH A 134 534 13 HOH HOH . G 6 HOH A 135 535 134 HOH HOH . G 6 HOH A 136 536 114 HOH HOH . G 6 HOH A 137 537 50 HOH HOH . G 6 HOH A 138 538 131 HOH HOH . G 6 HOH A 139 539 149 HOH HOH . G 6 HOH A 140 540 87 HOH HOH . G 6 HOH A 141 541 161 HOH HOH . G 6 HOH A 142 542 75 HOH HOH . G 6 HOH A 143 543 46 HOH HOH . G 6 HOH A 144 544 78 HOH HOH . G 6 HOH A 145 545 229 HOH HOH . G 6 HOH A 146 546 227 HOH HOH . G 6 HOH A 147 547 98 HOH HOH . G 6 HOH A 148 548 132 HOH HOH . G 6 HOH A 149 549 88 HOH HOH . G 6 HOH A 150 550 221 HOH HOH . G 6 HOH A 151 551 72 HOH HOH . G 6 HOH A 152 552 26 HOH HOH . G 6 HOH A 153 553 92 HOH HOH . G 6 HOH A 154 554 239 HOH HOH . G 6 HOH A 155 555 51 HOH HOH . G 6 HOH A 156 556 53 HOH HOH . G 6 HOH A 157 557 89 HOH HOH . G 6 HOH A 158 558 12 HOH HOH . G 6 HOH A 159 559 326 HOH HOH . G 6 HOH A 160 560 249 HOH HOH . G 6 HOH A 161 561 30 HOH HOH . G 6 HOH A 162 562 56 HOH HOH . G 6 HOH A 163 563 102 HOH HOH . G 6 HOH A 164 564 308 HOH HOH . G 6 HOH A 165 565 233 HOH HOH . G 6 HOH A 166 566 286 HOH HOH . G 6 HOH A 167 567 272 HOH HOH . G 6 HOH A 168 568 293 HOH HOH . G 6 HOH A 169 569 247 HOH HOH . G 6 HOH A 170 570 165 HOH HOH . G 6 HOH A 171 571 123 HOH HOH . G 6 HOH A 172 572 38 HOH HOH . G 6 HOH A 173 573 168 HOH HOH . G 6 HOH A 174 574 93 HOH HOH . G 6 HOH A 175 575 170 HOH HOH . G 6 HOH A 176 576 305 HOH HOH . G 6 HOH A 177 577 283 HOH HOH . G 6 HOH A 178 578 204 HOH HOH . G 6 HOH A 179 579 262 HOH HOH . G 6 HOH A 180 580 85 HOH HOH . G 6 HOH A 181 581 68 HOH HOH . G 6 HOH A 182 582 117 HOH HOH . G 6 HOH A 183 583 316 HOH HOH . G 6 HOH A 184 584 191 HOH HOH . G 6 HOH A 185 585 246 HOH HOH . G 6 HOH A 186 586 208 HOH HOH . G 6 HOH A 187 587 288 HOH HOH . G 6 HOH A 188 588 207 HOH HOH . G 6 HOH A 189 589 66 HOH HOH . G 6 HOH A 190 590 261 HOH HOH . G 6 HOH A 191 591 116 HOH HOH . G 6 HOH A 192 592 157 HOH HOH . G 6 HOH A 193 593 289 HOH HOH . G 6 HOH A 194 594 297 HOH HOH . G 6 HOH A 195 595 325 HOH HOH . G 6 HOH A 196 596 295 HOH HOH . G 6 HOH A 197 597 280 HOH HOH . G 6 HOH A 198 598 254 HOH HOH . G 6 HOH A 199 599 277 HOH HOH . G 6 HOH A 200 600 258 HOH HOH . G 6 HOH A 201 601 61 HOH HOH . G 6 HOH A 202 602 226 HOH HOH . G 6 HOH A 203 603 235 HOH HOH . G 6 HOH A 204 604 211 HOH HOH . G 6 HOH A 205 605 291 HOH HOH . G 6 HOH A 206 606 181 HOH HOH . G 6 HOH A 207 607 169 HOH HOH . G 6 HOH A 208 608 268 HOH HOH . G 6 HOH A 209 609 126 HOH HOH . G 6 HOH A 210 610 203 HOH HOH . G 6 HOH A 211 611 267 HOH HOH . G 6 HOH A 212 612 302 HOH HOH . G 6 HOH A 213 613 151 HOH HOH . G 6 HOH A 214 614 91 HOH HOH . G 6 HOH A 215 615 100 HOH HOH . G 6 HOH A 216 616 306 HOH HOH . G 6 HOH A 217 617 104 HOH HOH . G 6 HOH A 218 618 71 HOH HOH . G 6 HOH A 219 619 144 HOH HOH . G 6 HOH A 220 620 171 HOH HOH . G 6 HOH A 221 621 152 HOH HOH . G 6 HOH A 222 622 311 HOH HOH . G 6 HOH A 223 623 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -4.666 23.698 -2.09 0.66 19.45 ? S DMS 303 A 1 HETATM 2 O O DMS . . . D 3 -3.276 23.334 -2.498 0.66 20.9 ? O DMS 303 A 1 HETATM 3 C C1 DMS . . . D 3 -4.71 23.755 -0.278 0.66 20.09 ? C1 DMS 303 A 1 HETATM 4 C C2 DMS . . . D 3 -4.946 25.451 -2.448 0.66 20.72 ? C2 DMS 303 A 1 HETATM 5 H H11 DMS . . . D 3 -5.661 24.096 0.041 0.66 24.11 ? H11 DMS 303 A 1 HETATM 6 H H12 DMS . . . D 3 -3.962 24.417 0.073 0.66 24.11 ? H12 DMS 303 A 1 HETATM 7 H H13 DMS . . . D 3 -4.534 22.785 0.11 0.66 24.11 ? H13 DMS 303 A 1 HETATM 8 H H21 DMS . . . D 3 -4.196 26.031 -1.976 0.66 24.86 ? H21 DMS 303 A 1 HETATM 9 H H22 DMS . . . D 3 -5.897 25.739 -2.082 0.66 24.86 ? H22 DMS 303 A 1 HETATM 10 H H23 DMS . . . D 3 -4.907 25.609 -3.494 0.66 24.86 ? H23 DMS 303 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #