data_6T9Z # _model_server_result.job_id y69uSIzgjNB9yDUPHDBMxg _model_server_result.datetime_utc '2024-11-22 20:07:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t9z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6T9Z # _exptl.entry_id 6T9Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.02 _cell.angle_gamma 90 _cell.entry_id 6T9Z _cell.length_a 41.928 _cell.length_b 41.239 _cell.length_c 72.662 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T9Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 C N01 MYW . A MYW 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6T9Z _atom_sites.fract_transf_matrix[1][1] 0.02385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005955 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 3 MYW A 1 302 1 MYW C37 . D 4 DMS A 1 303 1 DMS DMS . E 5 HOH A 1 401 269 HOH HOH . E 5 HOH A 2 402 242 HOH HOH . E 5 HOH A 3 403 181 HOH HOH . E 5 HOH A 4 404 133 HOH HOH . E 5 HOH A 5 405 271 HOH HOH . E 5 HOH A 6 406 265 HOH HOH . E 5 HOH A 7 407 222 HOH HOH . E 5 HOH A 8 408 250 HOH HOH . E 5 HOH A 9 409 150 HOH HOH . E 5 HOH A 10 410 230 HOH HOH . E 5 HOH A 11 411 160 HOH HOH . E 5 HOH A 12 412 229 HOH HOH . E 5 HOH A 13 413 198 HOH HOH . E 5 HOH A 14 414 67 HOH HOH . E 5 HOH A 15 415 272 HOH HOH . E 5 HOH A 16 416 276 HOH HOH . E 5 HOH A 17 417 122 HOH HOH . E 5 HOH A 18 418 25 HOH HOH . E 5 HOH A 19 419 134 HOH HOH . E 5 HOH A 20 420 182 HOH HOH . E 5 HOH A 21 421 220 HOH HOH . E 5 HOH A 22 422 12 HOH HOH . E 5 HOH A 23 423 247 HOH HOH . E 5 HOH A 24 424 171 HOH HOH . E 5 HOH A 25 425 73 HOH HOH . E 5 HOH A 26 426 199 HOH HOH . E 5 HOH A 27 427 223 HOH HOH . E 5 HOH A 28 428 90 HOH HOH . E 5 HOH A 29 429 241 HOH HOH . E 5 HOH A 30 430 194 HOH HOH . E 5 HOH A 31 431 111 HOH HOH . E 5 HOH A 32 432 62 HOH HOH . E 5 HOH A 33 433 149 HOH HOH . E 5 HOH A 34 434 227 HOH HOH . E 5 HOH A 35 435 43 HOH HOH . E 5 HOH A 36 436 42 HOH HOH . E 5 HOH A 37 437 187 HOH HOH . E 5 HOH A 38 438 15 HOH HOH . E 5 HOH A 39 439 197 HOH HOH . E 5 HOH A 40 440 266 HOH HOH . E 5 HOH A 41 441 157 HOH HOH . E 5 HOH A 42 442 14 HOH HOH . E 5 HOH A 43 443 60 HOH HOH . E 5 HOH A 44 444 215 HOH HOH . E 5 HOH A 45 445 114 HOH HOH . E 5 HOH A 46 446 180 HOH HOH . E 5 HOH A 47 447 102 HOH HOH . E 5 HOH A 48 448 41 HOH HOH . E 5 HOH A 49 449 175 HOH HOH . E 5 HOH A 50 450 23 HOH HOH . E 5 HOH A 51 451 203 HOH HOH . E 5 HOH A 52 452 161 HOH HOH . E 5 HOH A 53 453 65 HOH HOH . E 5 HOH A 54 454 120 HOH HOH . E 5 HOH A 55 455 115 HOH HOH . E 5 HOH A 56 456 44 HOH HOH . E 5 HOH A 57 457 245 HOH HOH . E 5 HOH A 58 458 144 HOH HOH . E 5 HOH A 59 459 95 HOH HOH . E 5 HOH A 60 460 162 HOH HOH . E 5 HOH A 61 461 192 HOH HOH . E 5 HOH A 62 462 104 HOH HOH . E 5 HOH A 63 463 21 HOH HOH . E 5 HOH A 64 464 109 HOH HOH . E 5 HOH A 65 465 107 HOH HOH . E 5 HOH A 66 466 210 HOH HOH . E 5 HOH A 67 467 188 HOH HOH . E 5 HOH A 68 468 166 HOH HOH . E 5 HOH A 69 469 254 HOH HOH . E 5 HOH A 70 470 217 HOH HOH . E 5 HOH A 71 471 78 HOH HOH . E 5 HOH A 72 472 31 HOH HOH . E 5 HOH A 73 473 50 HOH HOH . E 5 HOH A 74 474 190 HOH HOH . E 5 HOH A 75 475 231 HOH HOH . E 5 HOH A 76 476 24 HOH HOH . E 5 HOH A 77 477 219 HOH HOH . E 5 HOH A 78 478 98 HOH HOH . E 5 HOH A 79 479 106 HOH HOH . E 5 HOH A 80 480 26 HOH HOH . E 5 HOH A 81 481 5 HOH HOH . E 5 HOH A 82 482 255 HOH HOH . E 5 HOH A 83 483 147 HOH HOH . E 5 HOH A 84 484 232 HOH HOH . E 5 HOH A 85 485 4 HOH HOH . E 5 HOH A 86 486 64 HOH HOH . E 5 HOH A 87 487 116 HOH HOH . E 5 HOH A 88 488 159 HOH HOH . E 5 HOH A 89 489 30 HOH HOH . E 5 HOH A 90 490 20 HOH HOH . E 5 HOH A 91 491 52 HOH HOH . E 5 HOH A 92 492 131 HOH HOH . E 5 HOH A 93 493 85 HOH HOH . E 5 HOH A 94 494 268 HOH HOH . E 5 HOH A 95 495 108 HOH HOH . E 5 HOH A 96 496 76 HOH HOH . E 5 HOH A 97 497 77 HOH HOH . E 5 HOH A 98 498 46 HOH HOH . E 5 HOH A 99 499 196 HOH HOH . E 5 HOH A 100 500 186 HOH HOH . E 5 HOH A 101 501 1 HOH HOH . E 5 HOH A 102 502 260 HOH HOH . E 5 HOH A 103 503 16 HOH HOH . E 5 HOH A 104 504 56 HOH HOH . E 5 HOH A 105 505 80 HOH HOH . E 5 HOH A 106 506 63 HOH HOH . E 5 HOH A 107 507 234 HOH HOH . E 5 HOH A 108 508 58 HOH HOH . E 5 HOH A 109 509 143 HOH HOH . E 5 HOH A 110 510 8 HOH HOH . E 5 HOH A 111 511 89 HOH HOH . E 5 HOH A 112 512 132 HOH HOH . E 5 HOH A 113 513 28 HOH HOH . E 5 HOH A 114 514 273 HOH HOH . E 5 HOH A 115 515 233 HOH HOH . E 5 HOH A 116 516 200 HOH HOH . E 5 HOH A 117 517 127 HOH HOH . E 5 HOH A 118 518 92 HOH HOH . E 5 HOH A 119 519 79 HOH HOH . E 5 HOH A 120 520 277 HOH HOH . E 5 HOH A 121 521 244 HOH HOH . E 5 HOH A 122 522 262 HOH HOH . E 5 HOH A 123 523 253 HOH HOH . E 5 HOH A 124 524 156 HOH HOH . E 5 HOH A 125 525 211 HOH HOH . E 5 HOH A 126 526 9 HOH HOH . E 5 HOH A 127 527 59 HOH HOH . E 5 HOH A 128 528 249 HOH HOH . E 5 HOH A 129 529 112 HOH HOH . E 5 HOH A 130 530 97 HOH HOH . E 5 HOH A 131 531 82 HOH HOH . E 5 HOH A 132 532 226 HOH HOH . E 5 HOH A 133 533 7 HOH HOH . E 5 HOH A 134 534 70 HOH HOH . E 5 HOH A 135 535 94 HOH HOH . E 5 HOH A 136 536 39 HOH HOH . E 5 HOH A 137 537 11 HOH HOH . E 5 HOH A 138 538 139 HOH HOH . E 5 HOH A 139 539 184 HOH HOH . E 5 HOH A 140 540 224 HOH HOH . E 5 HOH A 141 541 101 HOH HOH . E 5 HOH A 142 542 258 HOH HOH . E 5 HOH A 143 543 75 HOH HOH . E 5 HOH A 144 544 17 HOH HOH . E 5 HOH A 145 545 99 HOH HOH . E 5 HOH A 146 546 137 HOH HOH . E 5 HOH A 147 547 74 HOH HOH . E 5 HOH A 148 548 49 HOH HOH . E 5 HOH A 149 549 239 HOH HOH . E 5 HOH A 150 550 185 HOH HOH . E 5 HOH A 151 551 168 HOH HOH . E 5 HOH A 152 552 40 HOH HOH . E 5 HOH A 153 553 91 HOH HOH . E 5 HOH A 154 554 53 HOH HOH . E 5 HOH A 155 555 141 HOH HOH . E 5 HOH A 156 556 251 HOH HOH . E 5 HOH A 157 557 169 HOH HOH . E 5 HOH A 158 558 154 HOH HOH . E 5 HOH A 159 559 6 HOH HOH . E 5 HOH A 160 560 130 HOH HOH . E 5 HOH A 161 561 57 HOH HOH . E 5 HOH A 162 562 55 HOH HOH . E 5 HOH A 163 563 124 HOH HOH . E 5 HOH A 164 564 118 HOH HOH . E 5 HOH A 165 565 201 HOH HOH . E 5 HOH A 166 566 165 HOH HOH . E 5 HOH A 167 567 207 HOH HOH . E 5 HOH A 168 568 195 HOH HOH . E 5 HOH A 169 569 158 HOH HOH . E 5 HOH A 170 570 176 HOH HOH . E 5 HOH A 171 571 19 HOH HOH . E 5 HOH A 172 572 47 HOH HOH . E 5 HOH A 173 573 3 HOH HOH . E 5 HOH A 174 574 164 HOH HOH . E 5 HOH A 175 575 121 HOH HOH . E 5 HOH A 176 576 155 HOH HOH . E 5 HOH A 177 577 235 HOH HOH . E 5 HOH A 178 578 10 HOH HOH . E 5 HOH A 179 579 128 HOH HOH . E 5 HOH A 180 580 27 HOH HOH . E 5 HOH A 181 581 13 HOH HOH . E 5 HOH A 182 582 66 HOH HOH . E 5 HOH A 183 583 38 HOH HOH . E 5 HOH A 184 584 69 HOH HOH . E 5 HOH A 185 585 256 HOH HOH . E 5 HOH A 186 586 48 HOH HOH . E 5 HOH A 187 587 278 HOH HOH . E 5 HOH A 188 588 179 HOH HOH . E 5 HOH A 189 589 37 HOH HOH . E 5 HOH A 190 590 54 HOH HOH . E 5 HOH A 191 591 110 HOH HOH . E 5 HOH A 192 592 100 HOH HOH . E 5 HOH A 193 593 103 HOH HOH . E 5 HOH A 194 594 32 HOH HOH . E 5 HOH A 195 595 34 HOH HOH . E 5 HOH A 196 596 71 HOH HOH . E 5 HOH A 197 597 22 HOH HOH . E 5 HOH A 198 598 2 HOH HOH . E 5 HOH A 199 599 36 HOH HOH . E 5 HOH A 200 600 117 HOH HOH . E 5 HOH A 201 601 236 HOH HOH . E 5 HOH A 202 602 35 HOH HOH . E 5 HOH A 203 603 84 HOH HOH . E 5 HOH A 204 604 140 HOH HOH . E 5 HOH A 205 605 119 HOH HOH . E 5 HOH A 206 606 167 HOH HOH . E 5 HOH A 207 607 45 HOH HOH . E 5 HOH A 208 608 125 HOH HOH . E 5 HOH A 209 609 252 HOH HOH . E 5 HOH A 210 610 93 HOH HOH . E 5 HOH A 211 611 240 HOH HOH . E 5 HOH A 212 612 261 HOH HOH . E 5 HOH A 213 613 123 HOH HOH . E 5 HOH A 214 614 263 HOH HOH . E 5 HOH A 215 615 61 HOH HOH . E 5 HOH A 216 616 81 HOH HOH . E 5 HOH A 217 617 178 HOH HOH . E 5 HOH A 218 618 172 HOH HOH . E 5 HOH A 219 619 148 HOH HOH . E 5 HOH A 220 620 136 HOH HOH . E 5 HOH A 221 621 212 HOH HOH . E 5 HOH A 222 622 237 HOH HOH . E 5 HOH A 223 623 33 HOH HOH . E 5 HOH A 224 624 142 HOH HOH . E 5 HOH A 225 625 113 HOH HOH . E 5 HOH A 226 626 138 HOH HOH . E 5 HOH A 227 627 126 HOH HOH . E 5 HOH A 228 628 151 HOH HOH . E 5 HOH A 229 629 129 HOH HOH . E 5 HOH A 230 630 218 HOH HOH . E 5 HOH A 231 631 170 HOH HOH . E 5 HOH A 232 632 216 HOH HOH . E 5 HOH A 233 633 204 HOH HOH . E 5 HOH A 234 634 246 HOH HOH . E 5 HOH A 235 635 221 HOH HOH . E 5 HOH A 236 636 274 HOH HOH . E 5 HOH A 237 637 209 HOH HOH . E 5 HOH A 238 638 193 HOH HOH . E 5 HOH A 239 639 163 HOH HOH . E 5 HOH A 240 640 29 HOH HOH . E 5 HOH A 241 641 205 HOH HOH . E 5 HOH A 242 642 177 HOH HOH . E 5 HOH A 243 643 72 HOH HOH . E 5 HOH A 244 644 270 HOH HOH . E 5 HOH A 245 645 173 HOH HOH . E 5 HOH A 246 646 259 HOH HOH . E 5 HOH A 247 647 146 HOH HOH . E 5 HOH A 248 648 18 HOH HOH . E 5 HOH A 249 649 213 HOH HOH . E 5 HOH A 250 650 87 HOH HOH . E 5 HOH A 251 651 68 HOH HOH . E 5 HOH A 252 652 105 HOH HOH . E 5 HOH A 253 653 208 HOH HOH . E 5 HOH A 254 654 264 HOH HOH . E 5 HOH A 255 655 225 HOH HOH . E 5 HOH A 256 656 86 HOH HOH . E 5 HOH A 257 657 267 HOH HOH . E 5 HOH A 258 658 243 HOH HOH . E 5 HOH A 259 659 145 HOH HOH . E 5 HOH A 260 660 214 HOH HOH . E 5 HOH A 261 661 202 HOH HOH . E 5 HOH A 262 662 152 HOH HOH . E 5 HOH A 263 663 135 HOH HOH . E 5 HOH A 264 664 206 HOH HOH . E 5 HOH A 265 665 51 HOH HOH . E 5 HOH A 266 666 96 HOH HOH . E 5 HOH A 267 667 88 HOH HOH . E 5 HOH A 268 668 279 HOH HOH . E 5 HOH A 269 669 83 HOH HOH . E 5 HOH A 270 670 248 HOH HOH . E 5 HOH A 271 671 183 HOH HOH . E 5 HOH A 272 672 275 HOH HOH . E 5 HOH A 273 673 174 HOH HOH . E 5 HOH A 274 674 257 HOH HOH . E 5 HOH A 275 675 153 HOH HOH . E 5 HOH A 276 676 189 HOH HOH . E 5 HOH A 277 677 228 HOH HOH . E 5 HOH A 278 678 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 31.987 0.181 13.714 1 23.22 ? S DMS 303 A 1 HETATM 2 O O DMS . . . D 4 31.038 -0.894 13.938 1 19.66 ? O DMS 303 A 1 HETATM 3 C C1 DMS . . . D 4 31.519 1.398 12.629 1 21.18 ? C1 DMS 303 A 1 HETATM 4 C C2 DMS . . . D 4 32.28 0.863 15.239 1 20.86 ? C2 DMS 303 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #