data_6TBB # _model_server_result.job_id zaAopa5xY-mfckDvJSInKA _model_server_result.datetime_utc '2024-11-29 09:06:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6TBB # _exptl.entry_id 6TBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBB _cell.length_a 63.913 _cell.length_b 107.918 _cell.length_c 294.226 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 310 n n PA O2A NDP sing 311 n n PA O5B NDP sing 312 n n PA O3 NDP sing 313 n n O2A HOA2 NDP sing 314 n n O5B C5B NDP sing 315 n n C5B C4B NDP sing 316 n n C5B H51A NDP sing 317 n n C5B H52A NDP sing 318 n n C4B O4B NDP sing 319 n n C4B C3B NDP sing 320 n n C4B H4B NDP sing 321 n n O4B C1B NDP sing 322 n n C3B O3B NDP sing 323 n n C3B C2B NDP sing 324 n n C3B H3B NDP sing 325 n n O3B HO3A NDP sing 326 n n C2B O2B NDP sing 327 n n C2B C1B NDP sing 328 n n C2B H2B NDP sing 329 n n O2B P2B NDP sing 330 n n C1B N9A NDP sing 331 n n C1B H1B NDP sing 332 n n N9A C8A NDP sing 333 n y N9A C4A NDP sing 334 n y C8A N7A NDP doub 335 n y C8A H8A NDP sing 336 n n N7A C5A NDP sing 337 n y C5A C6A NDP sing 338 n y C5A C4A NDP doub 339 n y C6A N6A NDP sing 340 n n C6A N1A NDP doub 341 n y N6A H61A NDP sing 342 n n N6A H62A NDP sing 343 n n N1A C2A NDP sing 344 n y C2A N3A NDP doub 345 n y C2A H2A NDP sing 346 n n N3A C4A NDP sing 347 n y O3 PN NDP sing 348 n n PN O1N NDP doub 349 n n PN O2N NDP sing 350 n n PN O5D NDP sing 351 n n O2N H21N NDP sing 352 n n O5D C5D NDP sing 353 n n C5D C4D NDP sing 354 n n C5D H51N NDP sing 355 n n C5D H52N NDP sing 356 n n C4D O4D NDP sing 357 n n C4D C3D NDP sing 358 n n C4D H4D NDP sing 359 n n O4D C1D NDP sing 360 n n C3D O3D NDP sing 361 n n C3D C2D NDP sing 362 n n C3D H3D NDP sing 363 n n O3D HO3N NDP sing 364 n n C2D O2D NDP sing 365 n n C2D C1D NDP sing 366 n n C2D H2D NDP sing 367 n n O2D HO2N NDP sing 368 n n C1D N1N NDP sing 369 n n C1D H1D NDP sing 370 n n N1N C2N NDP sing 371 n n N1N C6N NDP sing 372 n n C2N C3N NDP doub 373 n n C2N H2N NDP sing 374 n n C3N C7N NDP sing 375 n n C3N C4N NDP sing 376 n n C7N O7N NDP doub 377 n n C7N N7N NDP sing 378 n n N7N H71N NDP sing 379 n n N7N H72N NDP sing 380 n n C4N C5N NDP sing 381 n n C4N H41N NDP sing 382 n n C4N H42N NDP sing 383 n n C5N C6N NDP doub 384 n n C5N H5N NDP sing 385 n n C6N H6N NDP sing 386 n n P2B O1X NDP doub 387 n n P2B O2X NDP sing 388 n n P2B O3X NDP sing 389 n n O2X HOP2 NDP sing 390 n n O3X HOP3 NDP sing 391 n n # _atom_sites.entry_id 6TBB _atom_sites.fract_transf_matrix[1][1] 0.015646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NDP A 1 301 1257 NDP NDP . J 3 KAL A 1 302 1258 KAL KLA . K 2 NDP B 1 301 1257 NDP NDP . L 3 KAL B 1 302 1258 KAL KLA . M 2 NDP C 1 301 1257 NDP NDP . N 3 KAL C 1 302 1258 KAL KLA . O 2 NDP D 1 301 1257 NDP NDP . P 3 KAL D 1 302 1258 KAL KLA . Q 2 NDP E 1 301 1257 NDP NDP . R 3 KAL E 1 302 1258 KAL KLA . S 2 NDP F 1 301 1257 NDP NDP . T 3 KAL F 1 302 1258 KAL KLA . U 2 NDP G 1 301 1257 NDP NDP . V 3 KAL G 1 302 1258 KAL KLA . W 2 NDP H 1 301 1257 NDP NDP . X 3 KAL H 1 302 1258 KAL KLA . Y 4 HOH A 1 401 3 HOH HOH . Y 4 HOH A 2 402 16 HOH HOH . Y 4 HOH A 3 403 1 HOH HOH . Y 4 HOH A 4 404 2 HOH HOH . Z 4 HOH C 1 401 14 HOH HOH . AA 4 HOH D 1 401 4 HOH HOH . BA 4 HOH E 1 401 7 HOH HOH . BA 4 HOH E 2 402 5 HOH HOH . BA 4 HOH E 3 403 17 HOH HOH . CA 4 HOH F 1 401 8 HOH HOH . DA 4 HOH G 1 401 10 HOH HOH . DA 4 HOH G 2 402 12 HOH HOH . EA 4 HOH H 1 401 19 HOH HOH . EA 4 HOH H 2 402 11 HOH HOH . EA 4 HOH H 3 403 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . I 2 -11.73 -16.15 -90.119 1 89.59 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . I 2 -11.593 -15.432 -91.429 1 93.23 -1 O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . I 2 -12.07 -17.588 -89.985 1 101.4 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . I 2 -10.356 -15.773 -89.479 1 84.86 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . I 2 -9.493 -16.611 -88.786 1 73.51 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . I 2 -8.234 -16.091 -89.476 1 82.87 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . I 2 -7.209 -15.958 -88.519 1 77.35 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . I 2 -7.72 -17.005 -90.597 1 86.22 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . I 2 -7.338 -16.294 -91.781 1 98.77 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . I 2 -6.512 -17.615 -89.945 1 91 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . I 2 -5.56 -18.21 -90.833 1 107.14 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . I 2 -6.045 -16.42 -89.155 1 78.97 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . I 2 -5.116 -16.762 -88.09 1 82.93 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . I 2 -5.415 -17.254 -86.882 1 78.91 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . I 2 -4.265 -17.412 -86.184 1 87.05 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . I 2 -3.245 -17.012 -86.951 1 68.1 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . I 2 -1.81 -16.919 -86.818 1 75.37 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . I 2 -1.231 -17.303 -85.679 1 90.73 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . I 2 -1.094 -16.437 -87.848 1 81.76 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . I 2 -1.705 -16.037 -88.975 1 89.09 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . I 2 -3.035 -16.09 -89.183 1 74.5 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . I 2 -3.819 -16.579 -88.21 1 80.62 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . I 2 -12.579 -15.431 -88.958 1 92.67 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . I 2 -13.211 -13.966 -88.961 1 75.98 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . I 2 -14.501 -14.329 -88.283 1 82.23 -1 O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . I 2 -13.155 -13.329 -90.338 1 81.81 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . I 2 -12.308 -13.137 -87.921 1 72.57 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . I 2 -11.319 -12.203 -88.321 1 68.89 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . I 2 -11.163 -11.069 -87.279 1 74.74 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . I 2 -12.405 -10.386 -87.004 1 68.94 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . I 2 -10.689 -11.575 -85.927 1 73.18 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . I 2 -9.766 -10.697 -85.264 1 66.99 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . I 2 -11.963 -11.717 -85.123 1 66.57 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . I 2 -11.677 -11.787 -83.716 1 66.83 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . I 2 -12.611 -10.464 -85.617 1 65.95 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . I 2 -14.025 -10.447 -85.45 1 75.45 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . I 2 -14.79 -11.461 -85.902 1 67.85 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . I 2 -16.174 -11.401 -85.687 1 73.64 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . I 2 -17.136 -12.457 -86.187 1 75.31 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . I 2 -18.29 -12.383 -85.788 1 75.44 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . I 2 -16.778 -13.416 -87.083 1 80.83 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . I 2 -16.712 -10.256 -85.045 1 73.25 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . I 2 -15.89 -9.236 -84.631 1 69.1 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . I 2 -14.524 -9.362 -84.824 1 70.92 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . I 2 -5.443 -19.821 -90.9 1 95.51 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . I 2 -4.639 -19.81 -92.177 1 96.65 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . I 2 -4.752 -20.233 -89.599 1 97.47 -1 O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . I 2 -6.86 -20.34 -91.04 1 85.83 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #