data_6TBB
#
_model_server_result.job_id            3aL8D4MDUfRE-De4iJHqgg 
_model_server_result.datetime_utc      '2024-11-29 08:51:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tbb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":301}' 
#
_entry.id    6TBB 
#
_exptl.entry_id    6TBB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TBB 
_cell.length_a            63.913 
_cell.length_b            107.918 
_cell.length_c            294.226 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TBB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X,BA,CA,DA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 310 n n 
PA O2A NDP sing 311 n n 
PA O5B NDP sing 312 n n 
PA O3 NDP sing 313 n n 
O2A HOA2 NDP sing 314 n n 
O5B C5B NDP sing 315 n n 
C5B C4B NDP sing 316 n n 
C5B H51A NDP sing 317 n n 
C5B H52A NDP sing 318 n n 
C4B O4B NDP sing 319 n n 
C4B C3B NDP sing 320 n n 
C4B H4B NDP sing 321 n n 
O4B C1B NDP sing 322 n n 
C3B O3B NDP sing 323 n n 
C3B C2B NDP sing 324 n n 
C3B H3B NDP sing 325 n n 
O3B HO3A NDP sing 326 n n 
C2B O2B NDP sing 327 n n 
C2B C1B NDP sing 328 n n 
C2B H2B NDP sing 329 n n 
O2B P2B NDP sing 330 n n 
C1B N9A NDP sing 331 n n 
C1B H1B NDP sing 332 n n 
N9A C8A NDP sing 333 n y 
N9A C4A NDP sing 334 n y 
C8A N7A NDP doub 335 n y 
C8A H8A NDP sing 336 n n 
N7A C5A NDP sing 337 n y 
C5A C6A NDP sing 338 n y 
C5A C4A NDP doub 339 n y 
C6A N6A NDP sing 340 n n 
C6A N1A NDP doub 341 n y 
N6A H61A NDP sing 342 n n 
N6A H62A NDP sing 343 n n 
N1A C2A NDP sing 344 n y 
C2A N3A NDP doub 345 n y 
C2A H2A NDP sing 346 n n 
N3A C4A NDP sing 347 n y 
O3 PN NDP sing 348 n n 
PN O1N NDP doub 349 n n 
PN O2N NDP sing 350 n n 
PN O5D NDP sing 351 n n 
O2N H21N NDP sing 352 n n 
O5D C5D NDP sing 353 n n 
C5D C4D NDP sing 354 n n 
C5D H51N NDP sing 355 n n 
C5D H52N NDP sing 356 n n 
C4D O4D NDP sing 357 n n 
C4D C3D NDP sing 358 n n 
C4D H4D NDP sing 359 n n 
O4D C1D NDP sing 360 n n 
C3D O3D NDP sing 361 n n 
C3D C2D NDP sing 362 n n 
C3D H3D NDP sing 363 n n 
O3D HO3N NDP sing 364 n n 
C2D O2D NDP sing 365 n n 
C2D C1D NDP sing 366 n n 
C2D H2D NDP sing 367 n n 
O2D HO2N NDP sing 368 n n 
C1D N1N NDP sing 369 n n 
C1D H1D NDP sing 370 n n 
N1N C2N NDP sing 371 n n 
N1N C6N NDP sing 372 n n 
C2N C3N NDP doub 373 n n 
C2N H2N NDP sing 374 n n 
C3N C7N NDP sing 375 n n 
C3N C4N NDP sing 376 n n 
C7N O7N NDP doub 377 n n 
C7N N7N NDP sing 378 n n 
N7N H71N NDP sing 379 n n 
N7N H72N NDP sing 380 n n 
C4N C5N NDP sing 381 n n 
C4N H41N NDP sing 382 n n 
C4N H42N NDP sing 383 n n 
C5N C6N NDP doub 384 n n 
C5N H5N NDP sing 385 n n 
C6N H6N NDP sing 386 n n 
P2B O1X NDP doub 387 n n 
P2B O2X NDP sing 388 n n 
P2B O3X NDP sing 389 n n 
O2X HOP2 NDP sing 390 n n 
O3X HOP3 NDP sing 391 n n 
#
_atom_sites.entry_id                     6TBB 
_atom_sites.fract_transf_matrix[1][1]    0.015646 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NDP A 1 301 1257 NDP NDP . 
J 3 KAL A 1 302 1258 KAL KLA . 
K 2 NDP B 1 301 1257 NDP NDP . 
L 3 KAL B 1 302 1258 KAL KLA . 
M 2 NDP C 1 301 1257 NDP NDP . 
N 3 KAL C 1 302 1258 KAL KLA . 
O 2 NDP D 1 301 1257 NDP NDP . 
P 3 KAL D 1 302 1258 KAL KLA . 
Q 2 NDP E 1 301 1257 NDP NDP . 
R 3 KAL E 1 302 1258 KAL KLA . 
S 2 NDP F 1 301 1257 NDP NDP . 
T 3 KAL F 1 302 1258 KAL KLA . 
U 2 NDP G 1 301 1257 NDP NDP . 
V 3 KAL G 1 302 1258 KAL KLA . 
W 2 NDP H 1 301 1257 NDP NDP . 
X 3 KAL H 1 302 1258 KAL KLA . 
Y 4 HOH A 1 401 3 HOH HOH . 
Y 4 HOH A 2 402 16 HOH HOH . 
Y 4 HOH A 3 403 1 HOH HOH . 
Y 4 HOH A 4 404 2 HOH HOH . 
Z 4 HOH C 1 401 14 HOH HOH . 
AA 4 HOH D 1 401 4 HOH HOH . 
BA 4 HOH E 1 401 7 HOH HOH . 
BA 4 HOH E 2 402 5 HOH HOH . 
BA 4 HOH E 3 403 17 HOH HOH . 
CA 4 HOH F 1 401 8 HOH HOH . 
DA 4 HOH G 1 401 10 HOH HOH . 
DA 4 HOH G 2 402 12 HOH HOH . 
EA 4 HOH H 1 401 19 HOH HOH . 
EA 4 HOH H 2 402 11 HOH HOH . 
EA 4 HOH H 3 403 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . Q 2 6.708 3.645 -161.709 1 74.46 ? PA NDP 301 E 1 
HETATM 2 O O1A NDP . . . Q 2 7.58 2.421 -161.545 1 85.19 -1 O1A NDP 301 E 1 
HETATM 3 O O2A NDP . . . Q 2 6.016 4.025 -162.982 1 86.04 ? O2A NDP 301 E 1 
HETATM 4 O O5B NDP . . . Q 2 7.493 4.88 -161.055 1 78.97 ? O5B NDP 301 E 1 
HETATM 5 C C5B NDP . . . Q 2 6.844 6.07 -160.572 1 75.25 ? C5B NDP 301 E 1 
HETATM 6 C C4B NDP . . . Q 2 6.334 6.959 -161.724 1 82.78 ? C4B NDP 301 E 1 
HETATM 7 O O4B NDP . . . Q 2 5.921 8.19 -161.134 1 78.86 ? O4B NDP 301 E 1 
HETATM 8 C C3B NDP . . . Q 2 7.381 7.335 -162.813 1 79.69 ? C3B NDP 301 E 1 
HETATM 9 O O3B NDP . . . Q 2 6.899 7.342 -164.151 1 73.75 ? O3B NDP 301 E 1 
HETATM 10 C C2B NDP . . . Q 2 7.799 8.735 -162.452 1 81.3 ? C2B NDP 301 E 1 
HETATM 11 O O2B NDP . . . Q 2 8.301 9.52 -163.522 1 93.92 ? O2B NDP 301 E 1 
HETATM 12 C C1B NDP . . . Q 2 6.519 9.256 -161.922 1 72.42 ? C1B NDP 301 E 1 
HETATM 13 N N9A NDP . . . Q 2 6.799 10.429 -161.096 1 71.59 ? N9A NDP 301 E 1 
HETATM 14 C C8A NDP . . . Q 2 7.322 10.459 -159.842 1 62.62 ? C8A NDP 301 E 1 
HETATM 15 N N7A NDP . . . Q 2 7.327 11.732 -159.396 1 67.94 ? N7A NDP 301 E 1 
HETATM 16 C C5A NDP . . . Q 2 6.837 12.498 -160.374 1 60.23 ? C5A NDP 301 E 1 
HETATM 17 C C6A NDP . . . Q 2 6.607 13.902 -160.531 1 73.4 ? C6A NDP 301 E 1 
HETATM 18 N N6A NDP . . . Q 2 6.936 14.754 -159.526 1 75.16 ? N6A NDP 301 E 1 
HETATM 19 N N1A NDP . . . Q 2 6.045 14.286 -161.693 1 77.88 ? N1A NDP 301 E 1 
HETATM 20 C C2A NDP . . . Q 2 5.705 13.429 -162.659 1 79.33 ? C2A NDP 301 E 1 
HETATM 21 N N3A NDP . . . Q 2 5.898 12.123 -162.573 1 73.11 ? N3A NDP 301 E 1 
HETATM 22 C C4A NDP . . . Q 2 6.463 11.644 -161.471 1 66.82 ? C4A NDP 301 E 1 
HETATM 23 O O3 NDP . . . Q 2 5.568 3.575 -160.572 1 79.63 ? O3 NDP 301 E 1 
HETATM 24 P PN NDP . . . Q 2 4.552 2.369 -160.367 1 70.77 ? PN NDP 301 E 1 
HETATM 25 O O1N NDP . . . Q 2 5.018 1.433 -159.235 1 73.12 -1 O1N NDP 301 E 1 
HETATM 26 O O2N NDP . . . Q 2 4.164 1.946 -161.801 1 69.29 ? O2N NDP 301 E 1 
HETATM 27 O O5D NDP . . . Q 2 3.398 3.214 -159.632 1 69.09 ? O5D NDP 301 E 1 
HETATM 28 C C5D NDP . . . Q 2 2.458 4.022 -160.299 1 71.95 ? C5D NDP 301 E 1 
HETATM 29 C C4D NDP . . . Q 2 1.286 4.273 -159.385 1 66.73 ? C4D NDP 301 E 1 
HETATM 30 O O4D NDP . . . Q 2 0.838 2.996 -158.978 1 69.28 ? O4D NDP 301 E 1 
HETATM 31 C C3D NDP . . . Q 2 1.671 5.045 -158.097 1 69.31 ? C3D NDP 301 E 1 
HETATM 32 O O3D NDP . . . Q 2 0.631 5.969 -157.737 1 59.43 ? O3D NDP 301 E 1 
HETATM 33 C C2D NDP . . . Q 2 1.803 3.976 -157.035 1 64.73 ? C2D NDP 301 E 1 
HETATM 34 O O2D NDP . . . Q 2 1.362 4.473 -155.793 1 62.64 ? O2D NDP 301 E 1 
HETATM 35 C C1D NDP . . . Q 2 0.761 3.026 -157.548 1 69.47 ? C1D NDP 301 E 1 
HETATM 36 N N1N NDP . . . Q 2 0.825 1.674 -157.092 1 69.87 ? N1N NDP 301 E 1 
HETATM 37 C C2N NDP . . . Q 2 1.903 0.928 -157.274 1 68.44 ? C2N NDP 301 E 1 
HETATM 38 C C3N NDP . . . Q 2 1.844 -0.409 -156.847 1 71.19 ? C3N NDP 301 E 1 
HETATM 39 C C7N NDP . . . Q 2 2.972 -1.318 -157.005 1 72.2 ? C7N NDP 301 E 1 
HETATM 40 O O7N NDP . . . Q 2 2.892 -2.403 -156.471 1 77.4 ? O7N NDP 301 E 1 
HETATM 41 N N7N NDP . . . Q 2 4.009 -0.948 -157.734 1 87.13 ? N7N NDP 301 E 1 
HETATM 42 C C4N NDP . . . Q 2 0.69 -0.954 -156.291 1 67.47 ? C4N NDP 301 E 1 
HETATM 43 C C5N NDP . . . Q 2 -0.401 -0.123 -156.136 1 74.49 ? C5N NDP 301 E 1 
HETATM 44 C C6N NDP . . . Q 2 -0.312 1.191 -156.547 1 67.57 ? C6N NDP 301 E 1 
HETATM 45 P P2B NDP . . . Q 2 9.865 9.973 -163.444 1 91.77 ? P2B NDP 301 E 1 
HETATM 46 O O1X NDP . . . Q 2 10.08 10.246 -164.928 1 91.3 ? O1X NDP 301 E 1 
HETATM 47 O O2X NDP . . . Q 2 9.843 11.181 -162.579 1 84.77 -1 O2X NDP 301 E 1 
HETATM 48 O O3X NDP . . . Q 2 10.687 8.899 -162.768 1 65.27 ? O3X NDP 301 E 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#