data_6TBB
#
_model_server_result.job_id            Hu0pK-xNOuhtOfijqjrAMg 
_model_server_result.datetime_utc      '2025-02-18 07:22:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tbb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":302}' 
#
_entry.id    6TBB 
#
_exptl.entry_id    6TBB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              548.711 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Kalimantacin 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TBB 
_cell.length_a            63.913 
_cell.length_b            107.918 
_cell.length_c            294.226 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TBB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X,BA,CA,DA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C30 H48 N2 O7' 
_chem_comp.formula_weight    548.711 
_chem_comp.id                KAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Kalimantacin 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     batumin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 KAL sing 160 n n 
C23 C22 KAL sing 161 n n 
C24 C22 KAL sing 162 n n 
C24 O26 KAL sing 163 n n 
C22 C20 KAL sing 164 n n 
O29 C27 KAL doub 165 n n 
O26 C27 KAL sing 166 n n 
C27 N28 KAL sing 167 n n 
C20 O21 KAL doub 168 n n 
C20 N19 KAL sing 169 n n 
N19 C18 KAL sing 170 n n 
O39 C37 KAL doub 171 n n 
C18 C16 KAL sing 172 n n 
C35 C34 KAL sing 173 n n 
C15 C16 KAL sing 174 n n 
C15 C13 KAL sing 175 n n 
C37 C36 KAL sing 176 n n 
C37 O38 KAL sing 177 n n 
C16 O17 KAL sing 178 n n 
C34 C36 KAL doub 179 e n 
C34 C33 KAL sing 180 n n 
C11 C10 KAL sing 181 n n 
C13 C12 KAL sing 182 n n 
C13 O14 KAL doub 183 n n 
C33 C31 KAL sing 184 n n 
C12 C10 KAL sing 185 n n 
C10 C09 KAL sing 186 n n 
C09 C08 KAL sing 187 n n 
C31 C32 KAL sing 188 n n 
C31 C30 KAL sing 189 n n 
C08 C07 KAL doub 190 e n 
C07 C06 KAL sing 191 n n 
C30 C02 KAL sing 192 n n 
C04 C03 KAL sing 193 n n 
C04 C05 KAL sing 194 n n 
C03 C02 KAL sing 195 n n 
C02 C01 KAL doub 196 n n 
C06 C05 KAL doub 197 z n 
C01 H1 KAL sing 198 n n 
C01 H2 KAL sing 199 n n 
C03 H3 KAL sing 200 n n 
C03 H4 KAL sing 201 n n 
C04 H5 KAL sing 202 n n 
C04 H6 KAL sing 203 n n 
C05 H7 KAL sing 204 n n 
C06 H8 KAL sing 205 n n 
C07 H9 KAL sing 206 n n 
C08 H10 KAL sing 207 n n 
C09 H11 KAL sing 208 n n 
C09 H12 KAL sing 209 n n 
C10 H13 KAL sing 210 n n 
C11 H14 KAL sing 211 n n 
C11 H15 KAL sing 212 n n 
C11 H16 KAL sing 213 n n 
C12 H17 KAL sing 214 n n 
C12 H18 KAL sing 215 n n 
C15 H19 KAL sing 216 n n 
C15 H20 KAL sing 217 n n 
C16 H21 KAL sing 218 n n 
O17 H22 KAL sing 219 n n 
C18 H23 KAL sing 220 n n 
C18 H24 KAL sing 221 n n 
N19 H25 KAL sing 222 n n 
C22 H26 KAL sing 223 n n 
C23 H27 KAL sing 224 n n 
C23 H28 KAL sing 225 n n 
C23 H29 KAL sing 226 n n 
C24 H30 KAL sing 227 n n 
C25 H31 KAL sing 228 n n 
C25 H32 KAL sing 229 n n 
C25 H33 KAL sing 230 n n 
N28 H34 KAL sing 231 n n 
N28 H35 KAL sing 232 n n 
C30 H36 KAL sing 233 n n 
C30 H37 KAL sing 234 n n 
C31 H38 KAL sing 235 n n 
C32 H39 KAL sing 236 n n 
C32 H40 KAL sing 237 n n 
C32 H41 KAL sing 238 n n 
C33 H42 KAL sing 239 n n 
C33 H43 KAL sing 240 n n 
C35 H44 KAL sing 241 n n 
C35 H45 KAL sing 242 n n 
C35 H46 KAL sing 243 n n 
C36 H47 KAL sing 244 n n 
O38 H48 KAL sing 245 n n 
#
_atom_sites.entry_id                     6TBB 
_atom_sites.fract_transf_matrix[1][1]    0.015646 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009266 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NDP A 1 301 1257 NDP NDP . 
J 3 KAL A 1 302 1258 KAL KLA . 
K 2 NDP B 1 301 1257 NDP NDP . 
L 3 KAL B 1 302 1258 KAL KLA . 
M 2 NDP C 1 301 1257 NDP NDP . 
N 3 KAL C 1 302 1258 KAL KLA . 
O 2 NDP D 1 301 1257 NDP NDP . 
P 3 KAL D 1 302 1258 KAL KLA . 
Q 2 NDP E 1 301 1257 NDP NDP . 
R 3 KAL E 1 302 1258 KAL KLA . 
S 2 NDP F 1 301 1257 NDP NDP . 
T 3 KAL F 1 302 1258 KAL KLA . 
U 2 NDP G 1 301 1257 NDP NDP . 
V 3 KAL G 1 302 1258 KAL KLA . 
W 2 NDP H 1 301 1257 NDP NDP . 
X 3 KAL H 1 302 1258 KAL KLA . 
Y 4 HOH A 1 401 3 HOH HOH . 
Y 4 HOH A 2 402 16 HOH HOH . 
Y 4 HOH A 3 403 1 HOH HOH . 
Y 4 HOH A 4 404 2 HOH HOH . 
Z 4 HOH C 1 401 14 HOH HOH . 
AA 4 HOH D 1 401 4 HOH HOH . 
BA 4 HOH E 1 401 7 HOH HOH . 
BA 4 HOH E 2 402 5 HOH HOH . 
BA 4 HOH E 3 403 17 HOH HOH . 
CA 4 HOH F 1 401 8 HOH HOH . 
DA 4 HOH G 1 401 10 HOH HOH . 
DA 4 HOH G 2 402 12 HOH HOH . 
EA 4 HOH H 1 401 19 HOH HOH . 
EA 4 HOH H 2 402 11 HOH HOH . 
EA 4 HOH H 3 403 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 KAL . . . L 3 2.966 6.309 -67.233 1 80.47 ? C01 KAL 302 B 1 
HETATM 2 C C02 KAL . . . L 3 3.522 6.29 -66.045 1 86.54 ? C02 KAL 302 B 1 
HETATM 3 C C03 KAL . . . L 3 4.919 6.949 -65.91 1 81.31 ? C03 KAL 302 B 1 
HETATM 4 C C04 KAL . . . L 3 6.007 5.882 -65.675 1 83.49 ? C04 KAL 302 B 1 
HETATM 5 C C05 KAL . . . L 3 6.109 4.769 -66.737 1 78.61 ? C05 KAL 302 B 1 
HETATM 6 C C06 KAL . . . L 3 6.039 3.453 -66.483 1 85.87 ? C06 KAL 302 B 1 
HETATM 7 C C07 KAL . . . L 3 5.758 2.741 -65.131 1 90.12 ? C07 KAL 302 B 1 
HETATM 8 C C08 KAL . . . L 3 5.237 1.511 -65.146 1 86.13 ? C08 KAL 302 B 1 
HETATM 9 C C09 KAL . . . L 3 4.869 0.747 -63.873 1 88.65 ? C09 KAL 302 B 1 
HETATM 10 C C10 KAL . . . L 3 5.437 -0.692 -63.866 1 90.48 ? C10 KAL 302 B 1 
HETATM 11 C C11 KAL . . . L 3 4.488 -1.626 -63.132 1 84.38 ? C11 KAL 302 B 1 
HETATM 12 C C12 KAL . . . L 3 6.767 -0.762 -63.104 1 83.9 ? C12 KAL 302 B 1 
HETATM 13 C C13 KAL . . . L 3 7.815 -1.797 -63.561 1 88.88 ? C13 KAL 302 B 1 
HETATM 14 O O14 KAL . . . L 3 7.499 -2.733 -64.237 1 83.45 ? O14 KAL 302 B 1 
HETATM 15 C C15 KAL . . . L 3 9.272 -1.53 -63.086 1 86.37 ? C15 KAL 302 B 1 
HETATM 16 C C16 KAL . . . L 3 10.248 -2.713 -62.995 1 91.64 ? C16 KAL 302 B 1 
HETATM 17 O O17 KAL . . . L 3 10.574 -3.145 -64.29 1 104.56 ? O17 KAL 302 B 1 
HETATM 18 C C18 KAL . . . L 3 11.531 -2.278 -62.26 1 94.46 ? C18 KAL 302 B 1 
HETATM 19 N N19 KAL . . . L 3 11.285 -2.174 -60.829 1 90.61 ? N19 KAL 302 B 1 
HETATM 20 C C20 KAL . . . L 3 11.371 -3.397 -60.081 1 94.59 ? C20 KAL 302 B 1 
HETATM 21 O O21 KAL . . . L 3 11.654 -4.39 -60.665 1 101.04 ? O21 KAL 302 B 1 
HETATM 22 C C22 KAL . . . L 3 11.091 -3.435 -58.587 1 96.11 ? C22 KAL 302 B 1 
HETATM 23 C C23 KAL . . . L 3 12.279 -4.112 -57.908 1 97.9 ? C23 KAL 302 B 1 
HETATM 24 C C24 KAL . . . L 3 9.784 -4.216 -58.293 1 99.95 ? C24 KAL 302 B 1 
HETATM 25 C C25 KAL . . . L 3 9.417 -4.102 -56.81 1 99.95 ? C25 KAL 302 B 1 
HETATM 26 O O26 KAL . . . L 3 8.705 -3.663 -58.99 1 101.78 ? O26 KAL 302 B 1 
HETATM 27 C C27 KAL . . . L 3 7.78 -4.476 -59.652 1 100.43 ? C27 KAL 302 B 1 
HETATM 28 N N28 KAL . . . L 3 6.496 -3.9 -60.02 1 103.95 ? N28 KAL 302 B 1 
HETATM 29 O O29 KAL . . . L 3 8.025 -5.591 -59.935 1 88.13 ? O29 KAL 302 B 1 
HETATM 30 C C30 KAL . . . L 3 2.78 5.528 -64.908 1 78.04 ? C30 KAL 302 B 1 
HETATM 31 C C31 KAL . . . L 3 2.883 6.095 -63.489 1 79.61 ? C31 KAL 302 B 1 
HETATM 32 C C32 KAL . . . L 3 2.532 7.588 -63.475 1 82.66 ? C32 KAL 302 B 1 
HETATM 33 C C33 KAL . . . L 3 1.907 5.396 -62.555 1 74.79 ? C33 KAL 302 B 1 
HETATM 34 C C34 KAL . . . L 3 2.349 3.966 -62.251 1 86.94 ? C34 KAL 302 B 1 
HETATM 35 C C35 KAL . . . L 3 3.753 3.747 -61.718 1 93.86 ? C35 KAL 302 B 1 
HETATM 36 C C36 KAL . . . L 3 1.507 2.963 -62.438 1 77.59 ? C36 KAL 302 B 1 
HETATM 37 C C37 KAL . . . L 3 1.84 1.51 -62.147 1 73.04 ? C37 KAL 302 B 1 
HETATM 38 O O38 KAL . . . L 3 1.143 0.658 -62.713 1 74.56 ? O38 KAL 302 B 1 
HETATM 39 O O39 KAL . . . L 3 2.728 1.123 -61.344 1 96.61 ? O39 KAL 302 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           39 
#