data_6TBB # _model_server_result.job_id vk4UUZTWFv1E2JpLGbqEag _model_server_result.datetime_utc '2024-11-29 09:06:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":302}' # _entry.id 6TBB # _exptl.entry_id 6TBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 548.711 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Kalimantacin _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBB _cell.length_a 63.913 _cell.length_b 107.918 _cell.length_c 294.226 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C30 H48 N2 O7' _chem_comp.formula_weight 548.711 _chem_comp.id KAL _chem_comp.mon_nstd_flag . _chem_comp.name Kalimantacin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms batumin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 KAL sing 160 n n C23 C22 KAL sing 161 n n C24 C22 KAL sing 162 n n C24 O26 KAL sing 163 n n C22 C20 KAL sing 164 n n O29 C27 KAL doub 165 n n O26 C27 KAL sing 166 n n C27 N28 KAL sing 167 n n C20 O21 KAL doub 168 n n C20 N19 KAL sing 169 n n N19 C18 KAL sing 170 n n O39 C37 KAL doub 171 n n C18 C16 KAL sing 172 n n C35 C34 KAL sing 173 n n C15 C16 KAL sing 174 n n C15 C13 KAL sing 175 n n C37 C36 KAL sing 176 n n C37 O38 KAL sing 177 n n C16 O17 KAL sing 178 n n C34 C36 KAL doub 179 e n C34 C33 KAL sing 180 n n C11 C10 KAL sing 181 n n C13 C12 KAL sing 182 n n C13 O14 KAL doub 183 n n C33 C31 KAL sing 184 n n C12 C10 KAL sing 185 n n C10 C09 KAL sing 186 n n C09 C08 KAL sing 187 n n C31 C32 KAL sing 188 n n C31 C30 KAL sing 189 n n C08 C07 KAL doub 190 e n C07 C06 KAL sing 191 n n C30 C02 KAL sing 192 n n C04 C03 KAL sing 193 n n C04 C05 KAL sing 194 n n C03 C02 KAL sing 195 n n C02 C01 KAL doub 196 n n C06 C05 KAL doub 197 z n C01 H1 KAL sing 198 n n C01 H2 KAL sing 199 n n C03 H3 KAL sing 200 n n C03 H4 KAL sing 201 n n C04 H5 KAL sing 202 n n C04 H6 KAL sing 203 n n C05 H7 KAL sing 204 n n C06 H8 KAL sing 205 n n C07 H9 KAL sing 206 n n C08 H10 KAL sing 207 n n C09 H11 KAL sing 208 n n C09 H12 KAL sing 209 n n C10 H13 KAL sing 210 n n C11 H14 KAL sing 211 n n C11 H15 KAL sing 212 n n C11 H16 KAL sing 213 n n C12 H17 KAL sing 214 n n C12 H18 KAL sing 215 n n C15 H19 KAL sing 216 n n C15 H20 KAL sing 217 n n C16 H21 KAL sing 218 n n O17 H22 KAL sing 219 n n C18 H23 KAL sing 220 n n C18 H24 KAL sing 221 n n N19 H25 KAL sing 222 n n C22 H26 KAL sing 223 n n C23 H27 KAL sing 224 n n C23 H28 KAL sing 225 n n C23 H29 KAL sing 226 n n C24 H30 KAL sing 227 n n C25 H31 KAL sing 228 n n C25 H32 KAL sing 229 n n C25 H33 KAL sing 230 n n N28 H34 KAL sing 231 n n N28 H35 KAL sing 232 n n C30 H36 KAL sing 233 n n C30 H37 KAL sing 234 n n C31 H38 KAL sing 235 n n C32 H39 KAL sing 236 n n C32 H40 KAL sing 237 n n C32 H41 KAL sing 238 n n C33 H42 KAL sing 239 n n C33 H43 KAL sing 240 n n C35 H44 KAL sing 241 n n C35 H45 KAL sing 242 n n C35 H46 KAL sing 243 n n C36 H47 KAL sing 244 n n O38 H48 KAL sing 245 n n # _atom_sites.entry_id 6TBB _atom_sites.fract_transf_matrix[1][1] 0.015646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NDP A 1 301 1257 NDP NDP . J 3 KAL A 1 302 1258 KAL KLA . K 2 NDP B 1 301 1257 NDP NDP . L 3 KAL B 1 302 1258 KAL KLA . M 2 NDP C 1 301 1257 NDP NDP . N 3 KAL C 1 302 1258 KAL KLA . O 2 NDP D 1 301 1257 NDP NDP . P 3 KAL D 1 302 1258 KAL KLA . Q 2 NDP E 1 301 1257 NDP NDP . R 3 KAL E 1 302 1258 KAL KLA . S 2 NDP F 1 301 1257 NDP NDP . T 3 KAL F 1 302 1258 KAL KLA . U 2 NDP G 1 301 1257 NDP NDP . V 3 KAL G 1 302 1258 KAL KLA . W 2 NDP H 1 301 1257 NDP NDP . X 3 KAL H 1 302 1258 KAL KLA . Y 4 HOH A 1 401 3 HOH HOH . Y 4 HOH A 2 402 16 HOH HOH . Y 4 HOH A 3 403 1 HOH HOH . Y 4 HOH A 4 404 2 HOH HOH . Z 4 HOH C 1 401 14 HOH HOH . AA 4 HOH D 1 401 4 HOH HOH . BA 4 HOH E 1 401 7 HOH HOH . BA 4 HOH E 2 402 5 HOH HOH . BA 4 HOH E 3 403 17 HOH HOH . CA 4 HOH F 1 401 8 HOH HOH . DA 4 HOH G 1 401 10 HOH HOH . DA 4 HOH G 2 402 12 HOH HOH . EA 4 HOH H 1 401 19 HOH HOH . EA 4 HOH H 2 402 11 HOH HOH . EA 4 HOH H 3 403 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 KAL . . . N 3 -36.377 1.947 -68.641 1 81.24 ? C01 KAL 302 C 1 HETATM 2 C C02 KAL . . . N 3 -36.95 2.424 -67.545 1 84.79 ? C02 KAL 302 C 1 HETATM 3 C C03 KAL . . . N 3 -38.449 2.166 -67.272 1 78.24 ? C03 KAL 302 C 1 HETATM 4 C C04 KAL . . . N 3 -39.081 3.446 -66.754 1 80.73 ? C04 KAL 302 C 1 HETATM 5 C C05 KAL . . . N 3 -39.144 4.492 -67.893 1 78.94 ? C05 KAL 302 C 1 HETATM 6 C C06 KAL . . . N 3 -39.034 5.785 -67.628 1 77.7 ? C06 KAL 302 C 1 HETATM 7 C C07 KAL . . . N 3 -38.813 6.284 -66.187 1 73.11 ? C07 KAL 302 C 1 HETATM 8 C C08 KAL . . . N 3 -38.256 7.469 -65.958 1 73.24 ? C08 KAL 302 C 1 HETATM 9 C C09 KAL . . . N 3 -38.008 7.956 -64.532 1 72.89 ? C09 KAL 302 C 1 HETATM 10 C C10 KAL . . . N 3 -38.727 9.28 -64.291 1 80.1 ? C10 KAL 302 C 1 HETATM 11 C C11 KAL . . . N 3 -38.033 10.06 -63.167 1 81.37 ? C11 KAL 302 C 1 HETATM 12 C C12 KAL . . . N 3 -40.181 8.949 -63.935 1 81.14 ? C12 KAL 302 C 1 HETATM 13 C C13 KAL . . . N 3 -41.166 10.124 -63.887 1 88.95 ? C13 KAL 302 C 1 HETATM 14 O O14 KAL . . . N 3 -40.793 11.237 -64.122 1 84.38 ? O14 KAL 302 C 1 HETATM 15 C C15 KAL . . . N 3 -42.624 9.739 -63.514 1 93.35 ? C15 KAL 302 C 1 HETATM 16 C C16 KAL . . . N 3 -43.745 10.781 -63.661 1 94.96 ? C16 KAL 302 C 1 HETATM 17 O O17 KAL . . . N 3 -44.034 10.952 -65.03 1 102.96 ? O17 KAL 302 C 1 HETATM 18 C C18 KAL . . . N 3 -45.035 10.331 -62.9 1 98.05 ? C18 KAL 302 C 1 HETATM 19 N N19 KAL . . . N 3 -44.842 10.02 -61.475 1 91.33 ? N19 KAL 302 C 1 HETATM 20 C C20 KAL . . . N 3 -44.689 11.089 -60.479 1 102.65 ? C20 KAL 302 C 1 HETATM 21 O O21 KAL . . . N 3 -44.724 12.257 -60.771 1 97.91 ? O21 KAL 302 C 1 HETATM 22 C C22 KAL . . . N 3 -44.442 10.722 -59.017 1 104.04 ? C22 KAL 302 C 1 HETATM 23 C C23 KAL . . . N 3 -45.683 11.025 -58.19 1 101.23 ? C23 KAL 302 C 1 HETATM 24 C C24 KAL . . . N 3 -43.248 11.572 -58.573 1 98.25 ? C24 KAL 302 C 1 HETATM 25 C C25 KAL . . . N 3 -42.716 11.215 -57.191 1 94.67 ? C25 KAL 302 C 1 HETATM 26 O O26 KAL . . . N 3 -42.265 11.291 -59.517 1 98.21 ? O26 KAL 302 C 1 HETATM 27 C C27 KAL . . . N 3 -41.318 12.274 -59.735 1 100.01 ? C27 KAL 302 C 1 HETATM 28 N N28 KAL . . . N 3 -40.039 11.877 -60.273 1 111.11 ? N28 KAL 302 C 1 HETATM 29 O O29 KAL . . . N 3 -41.54 13.401 -59.496 1 96.21 ? O29 KAL 302 C 1 HETATM 30 C C30 KAL . . . N 3 -36.112 3.178 -66.499 1 75.07 ? C30 KAL 302 C 1 HETATM 31 C C31 KAL . . . N 3 -36.149 2.342 -65.226 1 77.81 ? C31 KAL 302 C 1 HETATM 32 C C32 KAL . . . N 3 -35.735 0.89 -65.532 1 79.24 ? C32 KAL 302 C 1 HETATM 33 C C33 KAL . . . N 3 -35.172 2.92 -64.225 1 80.71 ? C33 KAL 302 C 1 HETATM 34 C C34 KAL . . . N 3 -35.692 4.168 -63.54 1 79.9 ? C34 KAL 302 C 1 HETATM 35 C C35 KAL . . . N 3 -37.053 4.095 -62.872 1 81.95 ? C35 KAL 302 C 1 HETATM 36 C C36 KAL . . . N 3 -34.93 5.232 -63.541 1 74.58 ? C36 KAL 302 C 1 HETATM 37 C C37 KAL . . . N 3 -35.339 6.509 -62.864 1 71.67 ? C37 KAL 302 C 1 HETATM 38 O O38 KAL . . . N 3 -34.692 7.564 -63.1 1 79.41 ? O38 KAL 302 C 1 HETATM 39 O O39 KAL . . . N 3 -36.292 6.507 -62.067 1 93.64 ? O39 KAL 302 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #