data_6TBB # _model_server_result.job_id xj4cdL-I8bLVYPj2APRdmg _model_server_result.datetime_utc '2024-11-25 19:49:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":302}' # _entry.id 6TBB # _exptl.entry_id 6TBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 548.711 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Kalimantacin _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBB _cell.length_a 63.913 _cell.length_b 107.918 _cell.length_c 294.226 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C30 H48 N2 O7' _chem_comp.formula_weight 548.711 _chem_comp.id KAL _chem_comp.mon_nstd_flag . _chem_comp.name Kalimantacin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms batumin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 C24 KAL sing 160 n n C23 C22 KAL sing 161 n n C24 C22 KAL sing 162 n n C24 O26 KAL sing 163 n n C22 C20 KAL sing 164 n n O29 C27 KAL doub 165 n n O26 C27 KAL sing 166 n n C27 N28 KAL sing 167 n n C20 O21 KAL doub 168 n n C20 N19 KAL sing 169 n n N19 C18 KAL sing 170 n n O39 C37 KAL doub 171 n n C18 C16 KAL sing 172 n n C35 C34 KAL sing 173 n n C15 C16 KAL sing 174 n n C15 C13 KAL sing 175 n n C37 C36 KAL sing 176 n n C37 O38 KAL sing 177 n n C16 O17 KAL sing 178 n n C34 C36 KAL doub 179 e n C34 C33 KAL sing 180 n n C11 C10 KAL sing 181 n n C13 C12 KAL sing 182 n n C13 O14 KAL doub 183 n n C33 C31 KAL sing 184 n n C12 C10 KAL sing 185 n n C10 C09 KAL sing 186 n n C09 C08 KAL sing 187 n n C31 C32 KAL sing 188 n n C31 C30 KAL sing 189 n n C08 C07 KAL doub 190 e n C07 C06 KAL sing 191 n n C30 C02 KAL sing 192 n n C04 C03 KAL sing 193 n n C04 C05 KAL sing 194 n n C03 C02 KAL sing 195 n n C02 C01 KAL doub 196 n n C06 C05 KAL doub 197 z n C01 H1 KAL sing 198 n n C01 H2 KAL sing 199 n n C03 H3 KAL sing 200 n n C03 H4 KAL sing 201 n n C04 H5 KAL sing 202 n n C04 H6 KAL sing 203 n n C05 H7 KAL sing 204 n n C06 H8 KAL sing 205 n n C07 H9 KAL sing 206 n n C08 H10 KAL sing 207 n n C09 H11 KAL sing 208 n n C09 H12 KAL sing 209 n n C10 H13 KAL sing 210 n n C11 H14 KAL sing 211 n n C11 H15 KAL sing 212 n n C11 H16 KAL sing 213 n n C12 H17 KAL sing 214 n n C12 H18 KAL sing 215 n n C15 H19 KAL sing 216 n n C15 H20 KAL sing 217 n n C16 H21 KAL sing 218 n n O17 H22 KAL sing 219 n n C18 H23 KAL sing 220 n n C18 H24 KAL sing 221 n n N19 H25 KAL sing 222 n n C22 H26 KAL sing 223 n n C23 H27 KAL sing 224 n n C23 H28 KAL sing 225 n n C23 H29 KAL sing 226 n n C24 H30 KAL sing 227 n n C25 H31 KAL sing 228 n n C25 H32 KAL sing 229 n n C25 H33 KAL sing 230 n n N28 H34 KAL sing 231 n n N28 H35 KAL sing 232 n n C30 H36 KAL sing 233 n n C30 H37 KAL sing 234 n n C31 H38 KAL sing 235 n n C32 H39 KAL sing 236 n n C32 H40 KAL sing 237 n n C32 H41 KAL sing 238 n n C33 H42 KAL sing 239 n n C33 H43 KAL sing 240 n n C35 H44 KAL sing 241 n n C35 H45 KAL sing 242 n n C35 H46 KAL sing 243 n n C36 H47 KAL sing 244 n n O38 H48 KAL sing 245 n n # _atom_sites.entry_id 6TBB _atom_sites.fract_transf_matrix[1][1] 0.015646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NDP A 1 301 1257 NDP NDP . J 3 KAL A 1 302 1258 KAL KLA . K 2 NDP B 1 301 1257 NDP NDP . L 3 KAL B 1 302 1258 KAL KLA . M 2 NDP C 1 301 1257 NDP NDP . N 3 KAL C 1 302 1258 KAL KLA . O 2 NDP D 1 301 1257 NDP NDP . P 3 KAL D 1 302 1258 KAL KLA . Q 2 NDP E 1 301 1257 NDP NDP . R 3 KAL E 1 302 1258 KAL KLA . S 2 NDP F 1 301 1257 NDP NDP . T 3 KAL F 1 302 1258 KAL KLA . U 2 NDP G 1 301 1257 NDP NDP . V 3 KAL G 1 302 1258 KAL KLA . W 2 NDP H 1 301 1257 NDP NDP . X 3 KAL H 1 302 1258 KAL KLA . Y 4 HOH A 1 401 3 HOH HOH . Y 4 HOH A 2 402 16 HOH HOH . Y 4 HOH A 3 403 1 HOH HOH . Y 4 HOH A 4 404 2 HOH HOH . Z 4 HOH C 1 401 14 HOH HOH . AA 4 HOH D 1 401 4 HOH HOH . BA 4 HOH E 1 401 7 HOH HOH . BA 4 HOH E 2 402 5 HOH HOH . BA 4 HOH E 3 403 17 HOH HOH . CA 4 HOH F 1 401 8 HOH HOH . DA 4 HOH G 1 401 10 HOH HOH . DA 4 HOH G 2 402 12 HOH HOH . EA 4 HOH H 1 401 19 HOH HOH . EA 4 HOH H 2 402 11 HOH HOH . EA 4 HOH H 3 403 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 KAL . . . T 3 -19.484 21.005 -144.834 1 76.04 ? C01 KAL 302 F 1 HETATM 2 C C02 KAL . . . T 3 -19.135 21.737 -143.776 1 81.44 ? C02 KAL 302 F 1 HETATM 3 C C03 KAL . . . T 3 -19.311 23.291 -143.742 1 86.22 ? C03 KAL 302 F 1 HETATM 4 C C04 KAL . . . T 3 -18.1 24.097 -143.232 1 79.13 ? C04 KAL 302 F 1 HETATM 5 C C05 KAL . . . T 3 -17.096 24.258 -144.39 1 77.8 ? C05 KAL 302 F 1 HETATM 6 C C06 KAL . . . T 3 -15.797 24.433 -144.18 1 78.95 ? C06 KAL 302 F 1 HETATM 7 C C07 KAL . . . T 3 -15.197 24.464 -142.766 1 82.82 ? C07 KAL 302 F 1 HETATM 8 C C08 KAL . . . T 3 -14.013 23.914 -142.551 1 80.85 ? C08 KAL 302 F 1 HETATM 9 C C09 KAL . . . T 3 -13.434 23.895 -141.139 1 83.8 ? C09 KAL 302 F 1 HETATM 10 C C10 KAL . . . T 3 -12.121 24.648 -141.022 1 86.39 ? C10 KAL 302 F 1 HETATM 11 C C11 KAL . . . T 3 -11.382 24.194 -139.76 1 82.51 ? C11 KAL 302 F 1 HETATM 12 C C12 KAL . . . T 3 -12.49 26.126 -140.923 1 99.58 ? C12 KAL 302 F 1 HETATM 13 C C13 KAL . . . T 3 -11.35 27.118 -141.132 1 99.82 ? C13 KAL 302 F 1 HETATM 14 O O14 KAL . . . T 3 -10.404 26.799 -141.789 1 98.15 ? O14 KAL 302 F 1 HETATM 15 C C15 KAL . . . T 3 -11.5 28.509 -140.488 1 91.33 ? C15 KAL 302 F 1 HETATM 16 C C16 KAL . . . T 3 -10.681 29.601 -141.174 1 85.61 ? C16 KAL 302 F 1 HETATM 17 O O17 KAL . . . T 3 -11.015 29.48 -142.548 1 85.09 ? O17 KAL 302 F 1 HETATM 18 C C18 KAL . . . T 3 -11.013 30.993 -140.583 1 78.77 ? C18 KAL 302 F 1 HETATM 19 N N19 KAL . . . T 3 -11.366 31.029 -139.163 1 71.8 ? N19 KAL 302 F 1 HETATM 20 C C20 KAL . . . T 3 -10.358 31.389 -138.171 1 82.93 ? C20 KAL 302 F 1 HETATM 21 O O21 KAL . . . T 3 -9.234 31.638 -138.449 1 72.1 ? O21 KAL 302 F 1 HETATM 22 C C22 KAL . . . T 3 -10.689 31.391 -136.68 1 100.9 ? C22 KAL 302 F 1 HETATM 23 C C23 KAL . . . T 3 -10.175 32.673 -136.009 1 103.17 ? C23 KAL 302 F 1 HETATM 24 C C24 KAL . . . T 3 -9.98 30.166 -136.086 1 91.92 ? C24 KAL 302 F 1 HETATM 25 C C25 KAL . . . T 3 -10.441 29.834 -134.671 1 84.76 ? C25 KAL 302 F 1 HETATM 26 O O26 KAL . . . T 3 -10.294 29.081 -136.91 1 98.98 ? O26 KAL 302 F 1 HETATM 27 C C27 KAL . . . T 3 -9.258 28.184 -137.165 1 93.25 ? C27 KAL 302 F 1 HETATM 28 N N28 KAL . . . T 3 -9.504 27.226 -138.223 1 79.66 ? N28 KAL 302 F 1 HETATM 29 O O29 KAL . . . T 3 -8.24 28.216 -136.525 1 81.5 ? O29 KAL 302 F 1 HETATM 30 C C30 KAL . . . T 3 -18.531 21.046 -142.557 1 69.58 ? C30 KAL 302 F 1 HETATM 31 C C31 KAL . . . T 3 -19.253 21.475 -141.312 1 76.19 ? C31 KAL 302 F 1 HETATM 32 C C32 KAL . . . T 3 -20.674 20.917 -141.433 1 81.69 ? C32 KAL 302 F 1 HETATM 33 C C33 KAL . . . T 3 -18.553 20.876 -140.097 1 79.22 ? C33 KAL 302 F 1 HETATM 34 C C34 KAL . . . T 3 -17.173 21.418 -139.73 1 83.83 ? C34 KAL 302 F 1 HETATM 35 C C35 KAL . . . T 3 -17.028 22.907 -139.411 1 88.95 ? C35 KAL 302 F 1 HETATM 36 C C36 KAL . . . T 3 -16.157 20.565 -139.666 1 82.81 ? C36 KAL 302 F 1 HETATM 37 C C37 KAL . . . T 3 -14.743 20.937 -139.232 1 72.44 ? C37 KAL 302 F 1 HETATM 38 O O38 KAL . . . T 3 -13.707 20.358 -139.651 1 77.86 ? O38 KAL 302 F 1 HETATM 39 O O39 KAL . . . T 3 -14.629 21.797 -138.349 1 74.76 ? O39 KAL 302 F 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #