data_6TBC # _model_server_result.job_id vNrrsc2MdQBadmCpr00ObQ _model_server_result.datetime_utc '2024-11-25 21:27:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6TBC # _exptl.entry_id 6TBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBC _cell.length_a 64.316 _cell.length_b 108.564 _cell.length_c 296.183 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 S N N ? 2 U N N ? 2 W N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 310 n n PA O2A NDP sing 311 n n PA O5B NDP sing 312 n n PA O3 NDP sing 313 n n O2A HOA2 NDP sing 314 n n O5B C5B NDP sing 315 n n C5B C4B NDP sing 316 n n C5B H51A NDP sing 317 n n C5B H52A NDP sing 318 n n C4B O4B NDP sing 319 n n C4B C3B NDP sing 320 n n C4B H4B NDP sing 321 n n O4B C1B NDP sing 322 n n C3B O3B NDP sing 323 n n C3B C2B NDP sing 324 n n C3B H3B NDP sing 325 n n O3B HO3A NDP sing 326 n n C2B O2B NDP sing 327 n n C2B C1B NDP sing 328 n n C2B H2B NDP sing 329 n n O2B P2B NDP sing 330 n n C1B N9A NDP sing 331 n n C1B H1B NDP sing 332 n n N9A C8A NDP sing 333 n y N9A C4A NDP sing 334 n y C8A N7A NDP doub 335 n y C8A H8A NDP sing 336 n n N7A C5A NDP sing 337 n y C5A C6A NDP sing 338 n y C5A C4A NDP doub 339 n y C6A N6A NDP sing 340 n n C6A N1A NDP doub 341 n y N6A H61A NDP sing 342 n n N6A H62A NDP sing 343 n n N1A C2A NDP sing 344 n y C2A N3A NDP doub 345 n y C2A H2A NDP sing 346 n n N3A C4A NDP sing 347 n y O3 PN NDP sing 348 n n PN O1N NDP doub 349 n n PN O2N NDP sing 350 n n PN O5D NDP sing 351 n n O2N H21N NDP sing 352 n n O5D C5D NDP sing 353 n n C5D C4D NDP sing 354 n n C5D H51N NDP sing 355 n n C5D H52N NDP sing 356 n n C4D O4D NDP sing 357 n n C4D C3D NDP sing 358 n n C4D H4D NDP sing 359 n n O4D C1D NDP sing 360 n n C3D O3D NDP sing 361 n n C3D C2D NDP sing 362 n n C3D H3D NDP sing 363 n n O3D HO3N NDP sing 364 n n C2D O2D NDP sing 365 n n C2D C1D NDP sing 366 n n C2D H2D NDP sing 367 n n O2D HO2N NDP sing 368 n n C1D N1N NDP sing 369 n n C1D H1D NDP sing 370 n n N1N C2N NDP sing 371 n n N1N C6N NDP sing 372 n n C2N C3N NDP doub 373 n n C2N H2N NDP sing 374 n n C3N C7N NDP sing 375 n n C3N C4N NDP sing 376 n n C7N O7N NDP doub 377 n n C7N N7N NDP sing 378 n n N7N H71N NDP sing 379 n n N7N H72N NDP sing 380 n n C4N C5N NDP sing 381 n n C4N H41N NDP sing 382 n n C4N H42N NDP sing 383 n n C5N C6N NDP doub 384 n n C5N H5N NDP sing 385 n n C6N H6N NDP sing 386 n n P2B O1X NDP doub 387 n n P2B O2X NDP sing 388 n n P2B O3X NDP sing 389 n n O2X HOP2 NDP sing 390 n n O3X HOP3 NDP sing 391 n n # _atom_sites.entry_id 6TBC _atom_sites.fract_transf_matrix[1][1] 0.015548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NDP A 1 301 1257 NDP NDP . J 3 N5H A 1 302 1258 N5H KLB . K 2 NDP B 1 301 1257 NDP NDP . L 3 N5H B 1 302 1258 N5H KLB . M 2 NDP C 1 301 1257 NDP NDP . N 3 N5H C 1 302 1258 N5H KLB . O 2 NDP D 1 301 1257 NDP NDP . P 3 N5H D 1 302 1258 N5H KLB . Q 2 NDP E 1 301 1257 NDP NDP . R 3 N5H E 1 302 1258 N5H KLB . S 2 NDP F 1 301 1257 NDP NDP . T 3 N5H F 1 302 1258 N5H KLB . U 2 NDP G 1 301 1257 NDP NDP . V 3 N5H G 1 302 1258 N5H KLB . W 2 NDP H 1 301 1257 NDP NDP . X 3 N5H H 1 302 1258 N5H KLB . Y 4 HOH A 1 401 3 HOH HOH . Y 4 HOH A 2 402 1 HOH HOH . Y 4 HOH A 3 403 2 HOH HOH . Y 4 HOH A 4 404 6 HOH HOH . Z 4 HOH B 1 401 27 HOH HOH . Z 4 HOH B 2 402 33 HOH HOH . Z 4 HOH B 3 403 42 HOH HOH . AA 4 HOH C 1 401 38 HOH HOH . AA 4 HOH C 2 402 30 HOH HOH . AA 4 HOH C 3 403 31 HOH HOH . AA 4 HOH C 4 404 48 HOH HOH . AA 4 HOH C 5 405 28 HOH HOH . AA 4 HOH C 6 406 49 HOH HOH . BA 4 HOH D 1 401 5 HOH HOH . CA 4 HOH E 1 401 43 HOH HOH . CA 4 HOH E 2 402 34 HOH HOH . CA 4 HOH E 3 403 35 HOH HOH . CA 4 HOH E 4 404 46 HOH HOH . DA 4 HOH F 1 401 45 HOH HOH . EA 4 HOH G 1 401 39 HOH HOH . EA 4 HOH G 2 402 44 HOH HOH . EA 4 HOH G 3 403 40 HOH HOH . FA 4 HOH H 1 401 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . I 2 -5.507 2.253 -56.093 1 104.28 ? PA NDP 301 A 1 HETATM 2 O O1A NDP . . . I 2 -5.586 1.649 -54.706 1 116.05 -1 O1A NDP 301 A 1 HETATM 3 O O2A NDP . . . I 2 -6.692 2.065 -56.999 1 112.8 ? O2A NDP 301 A 1 HETATM 4 O O5B NDP . . . I 2 -5.199 3.811 -56.03 1 103.91 ? O5B NDP 301 A 1 HETATM 5 C C5B NDP . . . I 2 -5.329 4.519 -57.267 1 97.08 ? C5B NDP 301 A 1 HETATM 6 C C4B NDP . . . I 2 -5.031 5.945 -56.897 1 98.27 ? C4B NDP 301 A 1 HETATM 7 O O4B NDP . . . I 2 -4.891 6.818 -58.019 1 97.4 ? O4B NDP 301 A 1 HETATM 8 C C3B NDP . . . I 2 -6.128 6.514 -56.035 1 89.88 ? C3B NDP 301 A 1 HETATM 9 O O3B NDP . . . I 2 -5.552 6.946 -54.818 1 94.28 ? O3B NDP 301 A 1 HETATM 10 C C2B NDP . . . I 2 -6.591 7.715 -56.796 1 99.8 ? C2B NDP 301 A 1 HETATM 11 O O2B NDP . . . I 2 -7.06 8.768 -55.96 1 113.59 ? O2B NDP 301 A 1 HETATM 12 C C1B NDP . . . I 2 -5.332 8.069 -57.531 1 91.96 ? C1B NDP 301 A 1 HETATM 13 N N9A NDP . . . I 2 -5.627 9.016 -58.598 1 87.2 ? N9A NDP 301 A 1 HETATM 14 C C8A NDP . . . I 2 -6.207 8.747 -59.777 1 81.07 ? C8A NDP 301 A 1 HETATM 15 N N7A NDP . . . I 2 -6.303 9.894 -60.5 1 86.56 ? N7A NDP 301 A 1 HETATM 16 C C5A NDP . . . I 2 -5.777 10.894 -59.768 1 79.72 ? C5A NDP 301 A 1 HETATM 17 C C6A NDP . . . I 2 -5.598 12.345 -59.915 1 85.83 ? C6A NDP 301 A 1 HETATM 18 N N6A NDP . . . I 2 -5.979 12.968 -61.06 1 94.98 ? N6A NDP 301 A 1 HETATM 19 N N1A NDP . . . I 2 -5.019 13.027 -58.895 1 92.86 ? N1A NDP 301 A 1 HETATM 20 C C2A NDP . . . I 2 -4.624 12.411 -57.756 1 100.81 ? C2A NDP 301 A 1 HETATM 21 N N3A NDP . . . I 2 -4.792 11.09 -57.539 1 91.46 ? N3A NDP 301 A 1 HETATM 22 C C4A NDP . . . I 2 -5.357 10.31 -58.496 1 87.59 ? C4A NDP 301 A 1 HETATM 23 O O3 NDP . . . I 2 -4.23 1.802 -56.998 1 111.61 ? O3 NDP 301 A 1 HETATM 24 P PN NDP . . . I 2 -3.388 0.41 -57.032 1 100.46 ? PN NDP 301 A 1 HETATM 25 O O1N NDP . . . I 2 -2.895 0.009 -55.643 1 102.48 -1 O1N NDP 301 A 1 HETATM 26 O O2N NDP . . . I 2 -4.032 -0.62 -57.921 1 122.2 ? O2N NDP 301 A 1 HETATM 27 O O5D NDP . . . I 2 -2.219 0.945 -57.975 1 100.81 ? O5D NDP 301 A 1 HETATM 28 C C5D NDP . . . I 2 -1.574 2.182 -57.673 1 103.21 ? C5D NDP 301 A 1 HETATM 29 C C4D NDP . . . I 2 -0.336 2.325 -58.54 1 90.24 ? C4D NDP 301 A 1 HETATM 30 O O4D NDP . . . I 2 0.25 1.033 -58.628 1 86.12 ? O4D NDP 301 A 1 HETATM 31 C C3D NDP . . . I 2 -0.662 2.739 -59.97 1 91.1 ? C3D NDP 301 A 1 HETATM 32 O O3D NDP . . . I 2 0.367 3.618 -60.471 1 86.3 ? O3D NDP 301 A 1 HETATM 33 C C2D NDP . . . I 2 -0.743 1.409 -60.691 1 81.42 ? C2D NDP 301 A 1 HETATM 34 O O2D NDP . . . I 2 -0.451 1.485 -62.066 1 84.24 ? O2D NDP 301 A 1 HETATM 35 C C1D NDP . . . I 2 0.353 0.648 -60.009 1 90.29 ? C1D NDP 301 A 1 HETATM 36 N N1N NDP . . . I 2 0.324 -0.813 -60.183 1 95.56 ? N1N NDP 301 A 1 HETATM 37 C C2N NDP . . . I 2 -0.734 -1.519 -59.793 1 98.92 ? C2N NDP 301 A 1 HETATM 38 C C3N NDP . . . I 2 -0.752 -2.906 -59.923 1 99.61 ? C3N NDP 301 A 1 HETATM 39 C C7N NDP . . . I 2 -1.969 -3.675 -59.51 1 101.77 ? C7N NDP 301 A 1 HETATM 40 O O7N NDP . . . I 2 -2.204 -4.783 -60.006 1 98.44 ? O7N NDP 301 A 1 HETATM 41 N N7N NDP . . . I 2 -2.772 -3.108 -58.601 1 100.83 ? N7N NDP 301 A 1 HETATM 42 C C4N NDP . . . I 2 0.363 -3.565 -60.439 1 100.99 ? C4N NDP 301 A 1 HETATM 43 C C5N NDP . . . I 2 1.46 -2.811 -60.822 1 93.99 ? C5N NDP 301 A 1 HETATM 44 C C6N NDP . . . I 2 1.408 -1.432 -60.676 1 92.14 ? C6N NDP 301 A 1 HETATM 45 P P2B NDP . . . I 2 -8.658 8.957 -55.866 1 104.47 ? P2B NDP 301 A 1 HETATM 46 O O1X NDP . . . I 2 -8.713 9.753 -54.57 1 101.1 ? O1X NDP 301 A 1 HETATM 47 O O2X NDP . . . I 2 -8.993 9.637 -57.175 1 98.16 -1 O2X NDP 301 A 1 HETATM 48 O O3X NDP . . . I 2 -9.209 7.542 -55.81 1 101.03 ? O3X NDP 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 48 #