data_6TBC
#
_model_server_result.job_id            4VzlpGvS-PZOPM0etub7sQ 
_model_server_result.datetime_utc      '2024-11-25 21:49:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":301}' 
#
_entry.id    6TBC 
#
_exptl.entry_id    6TBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TBC 
_cell.length_a            64.316 
_cell.length_b            108.564 
_cell.length_c            296.183 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 310 n n 
PA O2A NDP sing 311 n n 
PA O5B NDP sing 312 n n 
PA O3 NDP sing 313 n n 
O2A HOA2 NDP sing 314 n n 
O5B C5B NDP sing 315 n n 
C5B C4B NDP sing 316 n n 
C5B H51A NDP sing 317 n n 
C5B H52A NDP sing 318 n n 
C4B O4B NDP sing 319 n n 
C4B C3B NDP sing 320 n n 
C4B H4B NDP sing 321 n n 
O4B C1B NDP sing 322 n n 
C3B O3B NDP sing 323 n n 
C3B C2B NDP sing 324 n n 
C3B H3B NDP sing 325 n n 
O3B HO3A NDP sing 326 n n 
C2B O2B NDP sing 327 n n 
C2B C1B NDP sing 328 n n 
C2B H2B NDP sing 329 n n 
O2B P2B NDP sing 330 n n 
C1B N9A NDP sing 331 n n 
C1B H1B NDP sing 332 n n 
N9A C8A NDP sing 333 n y 
N9A C4A NDP sing 334 n y 
C8A N7A NDP doub 335 n y 
C8A H8A NDP sing 336 n n 
N7A C5A NDP sing 337 n y 
C5A C6A NDP sing 338 n y 
C5A C4A NDP doub 339 n y 
C6A N6A NDP sing 340 n n 
C6A N1A NDP doub 341 n y 
N6A H61A NDP sing 342 n n 
N6A H62A NDP sing 343 n n 
N1A C2A NDP sing 344 n y 
C2A N3A NDP doub 345 n y 
C2A H2A NDP sing 346 n n 
N3A C4A NDP sing 347 n y 
O3 PN NDP sing 348 n n 
PN O1N NDP doub 349 n n 
PN O2N NDP sing 350 n n 
PN O5D NDP sing 351 n n 
O2N H21N NDP sing 352 n n 
O5D C5D NDP sing 353 n n 
C5D C4D NDP sing 354 n n 
C5D H51N NDP sing 355 n n 
C5D H52N NDP sing 356 n n 
C4D O4D NDP sing 357 n n 
C4D C3D NDP sing 358 n n 
C4D H4D NDP sing 359 n n 
O4D C1D NDP sing 360 n n 
C3D O3D NDP sing 361 n n 
C3D C2D NDP sing 362 n n 
C3D H3D NDP sing 363 n n 
O3D HO3N NDP sing 364 n n 
C2D O2D NDP sing 365 n n 
C2D C1D NDP sing 366 n n 
C2D H2D NDP sing 367 n n 
O2D HO2N NDP sing 368 n n 
C1D N1N NDP sing 369 n n 
C1D H1D NDP sing 370 n n 
N1N C2N NDP sing 371 n n 
N1N C6N NDP sing 372 n n 
C2N C3N NDP doub 373 n n 
C2N H2N NDP sing 374 n n 
C3N C7N NDP sing 375 n n 
C3N C4N NDP sing 376 n n 
C7N O7N NDP doub 377 n n 
C7N N7N NDP sing 378 n n 
N7N H71N NDP sing 379 n n 
N7N H72N NDP sing 380 n n 
C4N C5N NDP sing 381 n n 
C4N H41N NDP sing 382 n n 
C4N H42N NDP sing 383 n n 
C5N C6N NDP doub 384 n n 
C5N H5N NDP sing 385 n n 
C6N H6N NDP sing 386 n n 
P2B O1X NDP doub 387 n n 
P2B O2X NDP sing 388 n n 
P2B O3X NDP sing 389 n n 
O2X HOP2 NDP sing 390 n n 
O3X HOP3 NDP sing 391 n n 
#
_atom_sites.entry_id                     6TBC 
_atom_sites.fract_transf_matrix[1][1]    0.015548 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NDP A 1 301 1257 NDP NDP . 
J 3 N5H A 1 302 1258 N5H KLB . 
K 2 NDP B 1 301 1257 NDP NDP . 
L 3 N5H B 1 302 1258 N5H KLB . 
M 2 NDP C 1 301 1257 NDP NDP . 
N 3 N5H C 1 302 1258 N5H KLB . 
O 2 NDP D 1 301 1257 NDP NDP . 
P 3 N5H D 1 302 1258 N5H KLB . 
Q 2 NDP E 1 301 1257 NDP NDP . 
R 3 N5H E 1 302 1258 N5H KLB . 
S 2 NDP F 1 301 1257 NDP NDP . 
T 3 N5H F 1 302 1258 N5H KLB . 
U 2 NDP G 1 301 1257 NDP NDP . 
V 3 N5H G 1 302 1258 N5H KLB . 
W 2 NDP H 1 301 1257 NDP NDP . 
X 3 N5H H 1 302 1258 N5H KLB . 
Y 4 HOH A 1 401 3 HOH HOH . 
Y 4 HOH A 2 402 1 HOH HOH . 
Y 4 HOH A 3 403 2 HOH HOH . 
Y 4 HOH A 4 404 6 HOH HOH . 
Z 4 HOH B 1 401 27 HOH HOH . 
Z 4 HOH B 2 402 33 HOH HOH . 
Z 4 HOH B 3 403 42 HOH HOH . 
AA 4 HOH C 1 401 38 HOH HOH . 
AA 4 HOH C 2 402 30 HOH HOH . 
AA 4 HOH C 3 403 31 HOH HOH . 
AA 4 HOH C 4 404 48 HOH HOH . 
AA 4 HOH C 5 405 28 HOH HOH . 
AA 4 HOH C 6 406 49 HOH HOH . 
BA 4 HOH D 1 401 5 HOH HOH . 
CA 4 HOH E 1 401 43 HOH HOH . 
CA 4 HOH E 2 402 34 HOH HOH . 
CA 4 HOH E 3 403 35 HOH HOH . 
CA 4 HOH E 4 404 46 HOH HOH . 
DA 4 HOH F 1 401 45 HOH HOH . 
EA 4 HOH G 1 401 39 HOH HOH . 
EA 4 HOH G 2 402 44 HOH HOH . 
EA 4 HOH G 3 403 40 HOH HOH . 
FA 4 HOH H 1 401 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . M 2 20.196 -28.251 -87.182 1 94.21 ? PA NDP 301 C 1 
HETATM 2 O O1A NDP . . . M 2 20.031 -29.404 -86.231 1 97.3 ? O1A NDP 301 C 1 
HETATM 3 O O2A NDP . . . M 2 19.459 -28.293 -88.489 1 105.47 ? O2A NDP 301 C 1 
HETATM 4 O O5B NDP . . . M 2 21.702 -27.937 -87.465 1 84.04 ? O5B NDP 301 C 1 
HETATM 5 C C5B NDP . . . M 2 22.545 -28.036 -86.309 1 81.33 ? C5B NDP 301 C 1 
HETATM 6 C C4B NDP . . . M 2 23.895 -27.846 -86.942 1 88.91 ? C4B NDP 301 C 1 
HETATM 7 O O4B NDP . . . M 2 24.895 -27.621 -85.967 1 95.06 ? O4B NDP 301 C 1 
HETATM 8 C C3B NDP . . . M 2 24.277 -29.089 -87.728 1 88.27 ? C3B NDP 301 C 1 
HETATM 9 O O3B NDP . . . M 2 24.497 -28.845 -89.131 1 86.37 ? O3B NDP 301 C 1 
HETATM 10 C C2B NDP . . . M 2 25.539 -29.502 -87.056 1 89.93 ? C2B NDP 301 C 1 
HETATM 11 O O2B NDP . . . M 2 26.383 -30.145 -87.981 1 103.06 ? O2B NDP 301 C 1 
HETATM 12 C C1B NDP . . . M 2 26.058 -28.195 -86.534 1 86.16 ? C1B NDP 301 C 1 
HETATM 13 N N9A NDP . . . M 2 27.088 -28.449 -85.533 1 88.61 ? N9A NDP 301 C 1 
HETATM 14 C C8A NDP . . . M 2 26.894 -28.956 -84.299 1 85.01 ? C8A NDP 301 C 1 
HETATM 15 N N7A NDP . . . M 2 28.088 -29.038 -83.671 1 83.92 ? N7A NDP 301 C 1 
HETATM 16 C C5A NDP . . . M 2 29.027 -28.574 -84.503 1 72.13 ? C5A NDP 301 C 1 
HETATM 17 C C6A NDP . . . M 2 30.483 -28.426 -84.467 1 81.92 ? C6A NDP 301 C 1 
HETATM 18 N N6A NDP . . . M 2 31.171 -28.779 -83.353 1 84.2 ? N6A NDP 301 C 1 
HETATM 19 N N1A NDP . . . M 2 31.093 -27.914 -85.562 1 82.02 ? N1A NDP 301 C 1 
HETATM 20 C C2A NDP . . . M 2 30.396 -27.565 -86.656 1 85.91 ? C2A NDP 301 C 1 
HETATM 21 N N3A NDP . . . M 2 29.066 -27.718 -86.769 1 83.58 ? N3A NDP 301 C 1 
HETATM 22 C C4A NDP . . . M 2 28.363 -28.209 -85.737 1 77.79 ? C4A NDP 301 C 1 
HETATM 23 O O3 NDP . . . M 2 19.971 -27.014 -86.192 1 96.86 ? O3 NDP 301 C 1 
HETATM 24 P PN NDP . . . M 2 18.906 -25.87 -86.421 1 85.15 ? PN NDP 301 C 1 
HETATM 25 O O1N NDP . . . M 2 17.681 -26.242 -85.6 1 76.17 -1 O1N NDP 301 C 1 
HETATM 26 O O2N NDP . . . M 2 18.974 -25.471 -87.898 1 76.9 ? O2N NDP 301 C 1 
HETATM 27 O O5D NDP . . . M 2 19.672 -24.785 -85.549 1 82.29 ? O5D NDP 301 C 1 
HETATM 28 C C5D NDP . . . M 2 20.737 -24.03 -86.096 1 74.48 ? C5D NDP 301 C 1 
HETATM 29 C C4D NDP . . . M 2 20.969 -22.768 -85.263 1 77.35 ? C4D NDP 301 C 1 
HETATM 30 O O4D NDP . . . M 2 19.717 -22.086 -85.085 1 73.84 ? O4D NDP 301 C 1 
HETATM 31 C C3D NDP . . . M 2 21.511 -23.034 -83.846 1 80.63 ? C3D NDP 301 C 1 
HETATM 32 O O3D NDP . . . M 2 22.494 -22.049 -83.446 1 77.64 ? O3D NDP 301 C 1 
HETATM 33 C C2D NDP . . . M 2 20.274 -22.971 -82.967 1 73.47 ? C2D NDP 301 C 1 
HETATM 34 O O2D NDP . . . M 2 20.595 -22.625 -81.618 1 81.38 ? O2D NDP 301 C 1 
HETATM 35 C C1D NDP . . . M 2 19.517 -21.872 -83.685 1 74.47 ? C1D NDP 301 C 1 
HETATM 36 N N1N NDP . . . M 2 18.093 -21.806 -83.378 1 71.91 ? N1N NDP 301 C 1 
HETATM 37 C C2N NDP . . . M 2 17.304 -22.822 -83.652 1 77.2 ? C2N NDP 301 C 1 
HETATM 38 C C3N NDP . . . M 2 15.952 -22.746 -83.373 1 82.5 ? C3N NDP 301 C 1 
HETATM 39 C C7N NDP . . . M 2 15.042 -23.887 -83.691 1 86.22 ? C7N NDP 301 C 1 
HETATM 40 O O7N NDP . . . M 2 13.948 -23.902 -83.168 1 76.84 ? O7N NDP 301 C 1 
HETATM 41 N N7N NDP . . . M 2 15.426 -24.831 -84.553 1 92.38 ? N7N NDP 301 C 1 
HETATM 42 C C4N NDP . . . M 2 15.426 -21.593 -82.826 1 78.74 ? C4N NDP 301 C 1 
HETATM 43 C C5N NDP . . . M 2 16.265 -20.549 -82.561 1 74.07 ? C5N NDP 301 C 1 
HETATM 44 C C6N NDP . . . M 2 17.607 -20.691 -82.846 1 74.11 ? C6N NDP 301 C 1 
HETATM 45 P P2B NDP . . . M 2 26.612 -31.697 -87.703 1 96 ? P2B NDP 301 C 1 
HETATM 46 O O1X NDP . . . M 2 27.259 -32.15 -89.011 1 99.77 ? O1X NDP 301 C 1 
HETATM 47 O O2X NDP . . . M 2 27.506 -31.529 -86.501 1 93.27 -1 O2X NDP 301 C 1 
HETATM 48 O O3X NDP . . . M 2 25.255 -32.283 -87.375 1 92.51 ? O3X NDP 301 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#