data_6TBC
#
_model_server_result.job_id            rmEYi5kVpclBpA-eAYCnog 
_model_server_result.datetime_utc      '2024-11-25 21:52:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    6TBC 
#
_exptl.entry_id    6TBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              548.711 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{E},5~{R},10~{E},12~{E},15~{S},19~{R})-20-[[(2~{R},3~{R})-3-aminocarbonyloxy-2-methyl-butanoyl]amino]-3,5,15-trimethyl-7-methylidene-19-oxidanyl-17-oxidanylidene-icosa-2,10,12-trienoic acid' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TBC 
_cell.length_a            64.316 
_cell.length_b            108.564 
_cell.length_c            296.183 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 
E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
? 3 V N N 
? 3 X N N 
#
_chem_comp.formula           'C30 H48 N2 O7' 
_chem_comp.formula_weight    548.711 
_chem_comp.id                N5H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{E},5~{R},10~{E},12~{E},15~{S},19~{R})-20-[[(2~{R},3~{R})-3-aminocarbonyloxy-2-methyl-butanoyl]amino]-3,5,15-trimethyl-7-methylidene-19-oxidanyl-17-oxidanylidene-icosa-2,10,12-trienoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C04 C03 N5H sing 224 n n 
C04 C05 N5H sing 225 n n 
C01 C02 N5H doub 226 n n 
C03 C02 N5H sing 227 n n 
C02 C30 N5H sing 228 n n 
C05 C06 N5H doub 229 e n 
C06 C07 N5H sing 230 n n 
C30 C31 N5H sing 231 n n 
C07 C08 N5H doub 232 e n 
O17 C16 N5H sing 233 n n 
O14 C13 N5H doub 234 n n 
C08 C09 N5H sing 235 n n 
C32 C31 N5H sing 236 n n 
C10 C12 N5H sing 237 n n 
C10 C09 N5H sing 238 n n 
C10 C11 N5H sing 239 n n 
C31 C33 N5H sing 240 n n 
C12 C13 N5H sing 241 n n 
C13 C15 N5H sing 242 n n 
C16 C15 N5H sing 243 n n 
C16 C18 N5H sing 244 n n 
O39 C37 N5H doub 245 n n 
C33 C34 N5H sing 246 n n 
C34 C36 N5H doub 247 e n 
C34 C35 N5H sing 248 n n 
C36 C37 N5H sing 249 n n 
C18 N19 N5H sing 250 n n 
C37 O38 N5H sing 251 n n 
N19 C20 N5H sing 252 n n 
N28 C27 N5H sing 253 n n 
O21 C20 N5H doub 254 n n 
C20 C22 N5H sing 255 n n 
C27 O29 N5H doub 256 n n 
C27 O26 N5H sing 257 n n 
O26 C24 N5H sing 258 n n 
C22 C24 N5H sing 259 n n 
C22 C23 N5H sing 260 n n 
C24 C25 N5H sing 261 n n 
C01 H1 N5H sing 262 n n 
C01 H2 N5H sing 263 n n 
C03 H3 N5H sing 264 n n 
C03 H4 N5H sing 265 n n 
C04 H5 N5H sing 266 n n 
C04 H6 N5H sing 267 n n 
C05 H7 N5H sing 268 n n 
C06 H8 N5H sing 269 n n 
C07 H9 N5H sing 270 n n 
C08 H10 N5H sing 271 n n 
C09 H11 N5H sing 272 n n 
C09 H12 N5H sing 273 n n 
C10 H13 N5H sing 274 n n 
C11 H14 N5H sing 275 n n 
C11 H15 N5H sing 276 n n 
C11 H16 N5H sing 277 n n 
C12 H17 N5H sing 278 n n 
C12 H18 N5H sing 279 n n 
C15 H19 N5H sing 280 n n 
C15 H20 N5H sing 281 n n 
C16 H21 N5H sing 282 n n 
O17 H22 N5H sing 283 n n 
C18 H23 N5H sing 284 n n 
C18 H24 N5H sing 285 n n 
N19 H25 N5H sing 286 n n 
C22 H26 N5H sing 287 n n 
C23 H27 N5H sing 288 n n 
C23 H28 N5H sing 289 n n 
C23 H29 N5H sing 290 n n 
C24 H30 N5H sing 291 n n 
C25 H31 N5H sing 292 n n 
C25 H32 N5H sing 293 n n 
C25 H33 N5H sing 294 n n 
N28 H34 N5H sing 295 n n 
N28 H35 N5H sing 296 n n 
C30 H36 N5H sing 297 n n 
C30 H37 N5H sing 298 n n 
C31 H38 N5H sing 299 n n 
C32 H39 N5H sing 300 n n 
C32 H40 N5H sing 301 n n 
C32 H41 N5H sing 302 n n 
C33 H42 N5H sing 303 n n 
C33 H43 N5H sing 304 n n 
C35 H44 N5H sing 305 n n 
C35 H45 N5H sing 306 n n 
C35 H46 N5H sing 307 n n 
C36 H47 N5H sing 308 n n 
O38 H48 N5H sing 309 n n 
#
_atom_sites.entry_id                     6TBC 
_atom_sites.fract_transf_matrix[1][1]    0.015548 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009211 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 NDP A 1 301 1257 NDP NDP . 
J 3 N5H A 1 302 1258 N5H KLB . 
K 2 NDP B 1 301 1257 NDP NDP . 
L 3 N5H B 1 302 1258 N5H KLB . 
M 2 NDP C 1 301 1257 NDP NDP . 
N 3 N5H C 1 302 1258 N5H KLB . 
O 2 NDP D 1 301 1257 NDP NDP . 
P 3 N5H D 1 302 1258 N5H KLB . 
Q 2 NDP E 1 301 1257 NDP NDP . 
R 3 N5H E 1 302 1258 N5H KLB . 
S 2 NDP F 1 301 1257 NDP NDP . 
T 3 N5H F 1 302 1258 N5H KLB . 
U 2 NDP G 1 301 1257 NDP NDP . 
V 3 N5H G 1 302 1258 N5H KLB . 
W 2 NDP H 1 301 1257 NDP NDP . 
X 3 N5H H 1 302 1258 N5H KLB . 
Y 4 HOH A 1 401 3 HOH HOH . 
Y 4 HOH A 2 402 1 HOH HOH . 
Y 4 HOH A 3 403 2 HOH HOH . 
Y 4 HOH A 4 404 6 HOH HOH . 
Z 4 HOH B 1 401 27 HOH HOH . 
Z 4 HOH B 2 402 33 HOH HOH . 
Z 4 HOH B 3 403 42 HOH HOH . 
AA 4 HOH C 1 401 38 HOH HOH . 
AA 4 HOH C 2 402 30 HOH HOH . 
AA 4 HOH C 3 403 31 HOH HOH . 
AA 4 HOH C 4 404 48 HOH HOH . 
AA 4 HOH C 5 405 28 HOH HOH . 
AA 4 HOH C 6 406 49 HOH HOH . 
BA 4 HOH D 1 401 5 HOH HOH . 
CA 4 HOH E 1 401 43 HOH HOH . 
CA 4 HOH E 2 402 34 HOH HOH . 
CA 4 HOH E 3 403 35 HOH HOH . 
CA 4 HOH E 4 404 46 HOH HOH . 
DA 4 HOH F 1 401 45 HOH HOH . 
EA 4 HOH G 1 401 39 HOH HOH . 
EA 4 HOH G 2 402 44 HOH HOH . 
EA 4 HOH G 3 403 40 HOH HOH . 
FA 4 HOH H 1 401 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 N5H . . . J 3 -3.174 -6.459 -67.641 1 93.63 ? C01 N5H 302 A 1 
HETATM 2 C C02 N5H . . . J 3 -4.006 -5.96 -66.757 1 102.26 ? C02 N5H 302 A 1 
HETATM 3 C C03 N5H . . . J 3 -5.517 -6.1 -67.002 1 107.05 ? C03 N5H 302 A 1 
HETATM 4 C C04 N5H . . . J 3 -6.105 -4.864 -67.695 1 99.71 ? C04 N5H 302 A 1 
HETATM 5 C C05 N5H . . . J 3 -6.457 -3.862 -66.595 1 110.25 ? C05 N5H 302 A 1 
HETATM 6 C C06 N5H . . . J 3 -5.687 -2.823 -66.3 1 110.51 ? C06 N5H 302 A 1 
HETATM 7 C C07 N5H . . . J 3 -6.013 -1.838 -65.175 1 105.03 ? C07 N5H 302 A 1 
HETATM 8 C C08 N5H . . . J 3 -5.113 -0.939 -64.828 1 106.87 ? C08 N5H 302 A 1 
HETATM 9 C C09 N5H . . . J 3 -5.387 0.044 -63.7 1 115.71 ? C09 N5H 302 A 1 
HETATM 10 C C10 N5H . . . J 3 -5.97 1.327 -64.298 1 121.58 ? C10 N5H 302 A 1 
HETATM 11 C C11 N5H . . . J 3 -5.382 2.53 -63.559 1 128.08 ? C11 N5H 302 A 1 
HETATM 12 C C12 N5H . . . J 3 -7.51 1.302 -64.2 1 128.67 ? C12 N5H 302 A 1 
HETATM 13 C C13 N5H . . . J 3 -8.184 2.68 -64.157 1 131.36 ? C13 N5H 302 A 1 
HETATM 14 O O14 N5H . . . J 3 -7.792 3.557 -64.864 1 123.59 ? O14 N5H 302 A 1 
HETATM 15 C C15 N5H . . . J 3 -9.317 2.901 -63.136 1 134 ? C15 N5H 302 A 1 
HETATM 16 C C16 N5H . . . J 3 -10.694 3.421 -63.59 1 116.07 ? C16 N5H 302 A 1 
HETATM 17 O O17 N5H . . . J 3 -10.833 3.333 -64.981 1 115.01 ? O17 N5H 302 A 1 
HETATM 18 C C18 N5H . . . J 3 -11.802 2.628 -62.869 1 110.46 ? C18 N5H 302 A 1 
HETATM 19 N N19 N5H . . . J 3 -11.531 2.493 -61.436 1 104.37 ? N19 N5H 302 A 1 
HETATM 20 C C20 N5H . . . J 3 -11.662 3.641 -60.57 1 105.69 ? C20 N5H 302 A 1 
HETATM 21 O O21 N5H . . . J 3 -12.019 4.661 -61.068 1 94.47 ? O21 N5H 302 A 1 
HETATM 22 C C22 N5H . . . J 3 -11.347 3.557 -59.059 1 111.29 ? C22 N5H 302 A 1 
HETATM 23 C C23 N5H . . . J 3 -12.571 4.036 -58.274 1 105.43 ? C23 N5H 302 A 1 
HETATM 24 C C24 N5H . . . J 3 -10.14 4.466 -58.701 1 112.44 ? C24 N5H 302 A 1 
HETATM 25 C C25 N5H . . . J 3 -9.81 4.496 -57.207 1 105.27 ? C25 N5H 302 A 1 
HETATM 26 O O26 N5H . . . J 3 -8.975 4.048 -59.357 1 102 ? O26 N5H 302 A 1 
HETATM 27 C C27 N5H . . . J 3 -8.239 5.075 -59.952 1 105.33 ? C27 N5H 302 A 1 
HETATM 28 N N28 N5H . . . J 3 -7.414 4.835 -61.128 1 99.71 ? N28 N5H 302 A 1 
HETATM 29 O O29 N5H . . . J 3 -8.296 6.151 -59.479 1 114.26 ? O29 N5H 302 A 1 
HETATM 30 C C30 N5H . . . J 3 -3.438 -5.217 -65.535 1 102.42 ? C30 N5H 302 A 1 
HETATM 31 C C31 N5H . . . J 3 -3.283 -6.031 -64.249 1 97.82 ? C31 N5H 302 A 1 
HETATM 32 C C32 N5H . . . J 3 -2.682 -7.407 -64.521 1 106.76 ? C32 N5H 302 A 1 
HETATM 33 C C33 N5H . . . J 3 -2.335 -5.34 -63.262 1 93.19 ? C33 N5H 302 A 1 
HETATM 34 C C34 N5H . . . J 3 -2.743 -3.895 -62.984 1 92.31 ? C34 N5H 302 A 1 
HETATM 35 C C35 N5H . . . J 3 -4.203 -3.495 -62.78 1 90.68 ? C35 N5H 302 A 1 
HETATM 36 C C36 N5H . . . J 3 -1.793 -2.999 -62.946 1 92 ? C36 N5H 302 A 1 
HETATM 37 C C37 N5H . . . J 3 -2.054 -1.523 -62.701 1 91.13 ? C37 N5H 302 A 1 
HETATM 38 O O38 N5H . . . J 3 -2.697 -1.098 -61.7 1 101.91 ? O38 N5H 302 A 1 
HETATM 39 O O39 N5H . . . J 3 -1.577 -0.728 -63.538 1 88.49 ? O39 N5H 302 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           39 
#