data_6TBC # _model_server_result.job_id M5dPGsud4v6g9-_yVARHbg _model_server_result.datetime_utc '2024-11-07 17:39:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":302}' # _entry.id 6TBC # _exptl.entry_id 6TBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 548.711 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{E},5~{R},10~{E},12~{E},15~{S},19~{R})-20-[[(2~{R},3~{R})-3-aminocarbonyloxy-2-methyl-butanoyl]amino]-3,5,15-trimethyl-7-methylidene-19-oxidanyl-17-oxidanylidene-icosa-2,10,12-trienoic acid' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBC _cell.length_a 64.316 _cell.length_b 108.564 _cell.length_c 296.183 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA,BA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,CA,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N # _chem_comp.formula 'C30 H48 N2 O7' _chem_comp.formula_weight 548.711 _chem_comp.id N5H _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{E},5~{R},10~{E},12~{E},15~{S},19~{R})-20-[[(2~{R},3~{R})-3-aminocarbonyloxy-2-methyl-butanoyl]amino]-3,5,15-trimethyl-7-methylidene-19-oxidanyl-17-oxidanylidene-icosa-2,10,12-trienoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C04 C03 N5H sing 224 n n C04 C05 N5H sing 225 n n C01 C02 N5H doub 226 n n C03 C02 N5H sing 227 n n C02 C30 N5H sing 228 n n C05 C06 N5H doub 229 e n C06 C07 N5H sing 230 n n C30 C31 N5H sing 231 n n C07 C08 N5H doub 232 e n O17 C16 N5H sing 233 n n O14 C13 N5H doub 234 n n C08 C09 N5H sing 235 n n C32 C31 N5H sing 236 n n C10 C12 N5H sing 237 n n C10 C09 N5H sing 238 n n C10 C11 N5H sing 239 n n C31 C33 N5H sing 240 n n C12 C13 N5H sing 241 n n C13 C15 N5H sing 242 n n C16 C15 N5H sing 243 n n C16 C18 N5H sing 244 n n O39 C37 N5H doub 245 n n C33 C34 N5H sing 246 n n C34 C36 N5H doub 247 e n C34 C35 N5H sing 248 n n C36 C37 N5H sing 249 n n C18 N19 N5H sing 250 n n C37 O38 N5H sing 251 n n N19 C20 N5H sing 252 n n N28 C27 N5H sing 253 n n O21 C20 N5H doub 254 n n C20 C22 N5H sing 255 n n C27 O29 N5H doub 256 n n C27 O26 N5H sing 257 n n O26 C24 N5H sing 258 n n C22 C24 N5H sing 259 n n C22 C23 N5H sing 260 n n C24 C25 N5H sing 261 n n C01 H1 N5H sing 262 n n C01 H2 N5H sing 263 n n C03 H3 N5H sing 264 n n C03 H4 N5H sing 265 n n C04 H5 N5H sing 266 n n C04 H6 N5H sing 267 n n C05 H7 N5H sing 268 n n C06 H8 N5H sing 269 n n C07 H9 N5H sing 270 n n C08 H10 N5H sing 271 n n C09 H11 N5H sing 272 n n C09 H12 N5H sing 273 n n C10 H13 N5H sing 274 n n C11 H14 N5H sing 275 n n C11 H15 N5H sing 276 n n C11 H16 N5H sing 277 n n C12 H17 N5H sing 278 n n C12 H18 N5H sing 279 n n C15 H19 N5H sing 280 n n C15 H20 N5H sing 281 n n C16 H21 N5H sing 282 n n O17 H22 N5H sing 283 n n C18 H23 N5H sing 284 n n C18 H24 N5H sing 285 n n N19 H25 N5H sing 286 n n C22 H26 N5H sing 287 n n C23 H27 N5H sing 288 n n C23 H28 N5H sing 289 n n C23 H29 N5H sing 290 n n C24 H30 N5H sing 291 n n C25 H31 N5H sing 292 n n C25 H32 N5H sing 293 n n C25 H33 N5H sing 294 n n N28 H34 N5H sing 295 n n N28 H35 N5H sing 296 n n C30 H36 N5H sing 297 n n C30 H37 N5H sing 298 n n C31 H38 N5H sing 299 n n C32 H39 N5H sing 300 n n C32 H40 N5H sing 301 n n C32 H41 N5H sing 302 n n C33 H42 N5H sing 303 n n C33 H43 N5H sing 304 n n C35 H44 N5H sing 305 n n C35 H45 N5H sing 306 n n C35 H46 N5H sing 307 n n C36 H47 N5H sing 308 n n O38 H48 N5H sing 309 n n # _atom_sites.entry_id 6TBC _atom_sites.fract_transf_matrix[1][1] 0.015548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009211 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NDP A 1 301 1257 NDP NDP . J 3 N5H A 1 302 1258 N5H KLB . K 2 NDP B 1 301 1257 NDP NDP . L 3 N5H B 1 302 1258 N5H KLB . M 2 NDP C 1 301 1257 NDP NDP . N 3 N5H C 1 302 1258 N5H KLB . O 2 NDP D 1 301 1257 NDP NDP . P 3 N5H D 1 302 1258 N5H KLB . Q 2 NDP E 1 301 1257 NDP NDP . R 3 N5H E 1 302 1258 N5H KLB . S 2 NDP F 1 301 1257 NDP NDP . T 3 N5H F 1 302 1258 N5H KLB . U 2 NDP G 1 301 1257 NDP NDP . V 3 N5H G 1 302 1258 N5H KLB . W 2 NDP H 1 301 1257 NDP NDP . X 3 N5H H 1 302 1258 N5H KLB . Y 4 HOH A 1 401 3 HOH HOH . Y 4 HOH A 2 402 1 HOH HOH . Y 4 HOH A 3 403 2 HOH HOH . Y 4 HOH A 4 404 6 HOH HOH . Z 4 HOH B 1 401 27 HOH HOH . Z 4 HOH B 2 402 33 HOH HOH . Z 4 HOH B 3 403 42 HOH HOH . AA 4 HOH C 1 401 38 HOH HOH . AA 4 HOH C 2 402 30 HOH HOH . AA 4 HOH C 3 403 31 HOH HOH . AA 4 HOH C 4 404 48 HOH HOH . AA 4 HOH C 5 405 28 HOH HOH . AA 4 HOH C 6 406 49 HOH HOH . BA 4 HOH D 1 401 5 HOH HOH . CA 4 HOH E 1 401 43 HOH HOH . CA 4 HOH E 2 402 34 HOH HOH . CA 4 HOH E 3 403 35 HOH HOH . CA 4 HOH E 4 404 46 HOH HOH . DA 4 HOH F 1 401 45 HOH HOH . EA 4 HOH G 1 401 39 HOH HOH . EA 4 HOH G 2 402 44 HOH HOH . EA 4 HOH G 3 403 40 HOH HOH . FA 4 HOH H 1 401 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 N5H . . . X 3 12.873 17.585 -138.535 1 95.1 ? C01 N5H 302 H 1 HETATM 2 C C02 N5H . . . X 3 13.522 18.032 -137.484 1 97.6 ? C02 N5H 302 H 1 HETATM 3 C C03 N5H . . . X 3 13.425 19.531 -137.176 1 100.07 ? C03 N5H 302 H 1 HETATM 4 C C04 N5H . . . X 3 14.708 20.329 -137.444 1 95.11 ? C04 N5H 302 H 1 HETATM 5 C C05 N5H . . . X 3 15.668 19.956 -136.341 1 94.37 ? C05 N5H 302 H 1 HETATM 6 C C06 N5H . . . X 3 16.949 20.225 -136.439 1 105.26 ? C06 N5H 302 H 1 HETATM 7 C C07 N5H . . . X 3 17.853 19.779 -135.285 1 93.8 ? C07 N5H 302 H 1 HETATM 8 C C08 N5H . . . X 3 18.997 19.195 -135.574 1 96.42 ? C08 N5H 302 H 1 HETATM 9 C C09 N5H . . . X 3 19.905 18.677 -134.466 1 92.29 ? C09 N5H 302 H 1 HETATM 10 C C10 N5H . . . X 3 21.044 19.593 -134.112 1 95.45 ? C10 N5H 302 H 1 HETATM 11 C C11 N5H . . . X 3 21.849 18.833 -133.056 1 95.64 ? C11 N5H 302 H 1 HETATM 12 C C12 N5H . . . X 3 20.508 20.931 -133.569 1 101.7 ? C12 N5H 302 H 1 HETATM 13 C C13 N5H . . . X 3 21.505 22.098 -133.596 1 108.69 ? C13 N5H 302 H 1 HETATM 14 O O14 N5H . . . X 3 22.629 21.995 -134.004 1 98.85 ? O14 N5H 302 H 1 HETATM 15 C C15 N5H . . . X 3 20.961 23.428 -133.078 1 121.02 ? C15 N5H 302 H 1 HETATM 16 C C16 N5H . . . X 3 21.978 24.559 -133.019 1 128.96 ? C16 N5H 302 H 1 HETATM 17 O O17 N5H . . . X 3 22.231 25.019 -134.328 1 131.33 ? O17 N5H 302 H 1 HETATM 18 C C18 N5H . . . X 3 21.398 25.655 -132.121 1 123.56 ? C18 N5H 302 H 1 HETATM 19 N N19 N5H . . . X 3 21.275 25.218 -130.73 1 116.7 ? N19 N5H 302 H 1 HETATM 20 C C20 N5H . . . X 3 22.424 25.151 -129.825 1 115.62 ? C20 N5H 302 H 1 HETATM 21 O O21 N5H . . . X 3 23.503 25.439 -130.208 1 106.31 ? O21 N5H 302 H 1 HETATM 22 C C22 N5H . . . X 3 22.254 24.692 -128.363 1 118.45 ? C22 N5H 302 H 1 HETATM 23 C C23 N5H . . . X 3 22.687 25.784 -127.379 1 103.67 ? C23 N5H 302 H 1 HETATM 24 C C24 N5H . . . X 3 23.096 23.435 -128.09 1 127.25 ? C24 N5H 302 H 1 HETATM 25 C C25 N5H . . . X 3 22.705 22.833 -126.733 1 128.51 ? C25 N5H 302 H 1 HETATM 26 O O26 N5H . . . X 3 22.879 22.48 -129.104 1 108.95 ? O26 N5H 302 H 1 HETATM 27 C C27 N5H . . . X 3 23.967 21.744 -129.545 1 102.77 ? C27 N5H 302 H 1 HETATM 28 N N28 N5H . . . X 3 23.648 20.547 -130.319 1 93.92 ? N28 N5H 302 H 1 HETATM 29 O O29 N5H . . . X 3 25.089 22.101 -129.292 1 105.26 ? O29 N5H 302 H 1 HETATM 30 C C30 N5H . . . X 3 14.317 17.06 -136.582 1 93.33 ? C30 N5H 302 H 1 HETATM 31 C C31 N5H . . . X 3 13.672 16.9 -135.208 1 91.23 ? C31 N5H 302 H 1 HETATM 32 C C32 N5H . . . X 3 12.21 16.477 -135.385 1 105.75 ? C32 N5H 302 H 1 HETATM 33 C C33 N5H . . . X 3 14.321 15.81 -134.383 1 85.99 ? C33 N5H 302 H 1 HETATM 34 C C34 N5H . . . X 3 15.633 16.226 -133.746 1 87.36 ? C34 N5H 302 H 1 HETATM 35 C C35 N5H . . . X 3 15.653 17.461 -132.856 1 89.6 ? C35 N5H 302 H 1 HETATM 36 C C36 N5H . . . X 3 16.694 15.469 -133.963 1 82.18 ? C36 N5H 302 H 1 HETATM 37 C C37 N5H . . . X 3 18.078 15.727 -133.383 1 85.58 ? C37 N5H 302 H 1 HETATM 38 O O38 N5H . . . X 3 18.248 16.324 -132.268 1 96.19 ? O38 N5H 302 H 1 HETATM 39 O O39 N5H . . . X 3 19.061 15.309 -134.053 1 72.22 ? O39 N5H 302 H 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 39 #