data_6TBE # _model_server_result.job_id PF3ybQaviOubrw0rO-EGzw _model_server_result.datetime_utc '2025-04-02 00:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6TBE # _exptl.entry_id 6TBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 612.624 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description NOVOBIOCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBE _cell.length_a 95.738 _cell.length_b 95.738 _cell.length_c 34.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall 'I 4bw' _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H36 N2 O11' _chem_comp.formula_weight 612.624 _chem_comp.id NOV _chem_comp.mon_nstd_flag . _chem_comp.name NOVOBIOCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 NOV sing 246 n n C1 H11A NOV sing 247 n n C1 H12 NOV sing 248 n n C1 H13 NOV sing 249 n n O1 C27 NOV sing 250 n n N1 C12 NOV sing 251 n n N1 HN11 NOV sing 252 n n N1 HN12 NOV sing 253 n n C12 O4 NOV doub 254 n n C12 O5 NOV sing 255 n n O5 C28 NOV sing 256 n n C27 C28 NOV sing 257 n n C27 C31 NOV sing 258 n n C27 H27 NOV sing 259 n n C28 C29 NOV sing 260 n n C28 H28 NOV sing 261 n n C29 O6 NOV sing 262 n n C29 C30 NOV sing 263 n n C29 H29 NOV sing 264 n n O6 HO6 NOV sing 265 n n C30 O7 NOV sing 266 n n C30 O8 NOV sing 267 n n C30 H30 NOV sing 268 n n O7 C31 NOV sing 269 n n C31 C23 NOV sing 270 n n C31 C26 NOV sing 271 n n C23 H231 NOV sing 272 n n C23 H232 NOV sing 273 n n C23 H233 NOV sing 274 n n C26 H261 NOV sing 275 n n C26 H262 NOV sing 276 n n C26 H263 NOV sing 277 n n O8 C3 NOV sing 278 n n C3 C4 NOV doub 279 n y C3 C11 NOV sing 280 n y C4 C2 NOV sing 281 n n C4 C5 NOV sing 282 n y C2 H21A NOV sing 283 n n C2 H22 NOV sing 284 n n C2 H23 NOV sing 285 n n C5 C9 NOV doub 286 n y C5 O10 NOV sing 287 n n C9 C10 NOV sing 288 n y C9 C8 NOV sing 289 n n C10 C11 NOV doub 290 n y C10 H10 NOV sing 291 n n C11 H11 NOV sing 292 n n O10 C6 NOV sing 293 n n C6 O11 NOV doub 294 n n C6 C7 NOV sing 295 n n C7 C8 NOV doub 296 n n C7 N2 NOV sing 297 n n C8 O9 NOV sing 298 n n O9 HO9 NOV sing 299 n n N2 C13 NOV sing 300 n n N2 HN2 NOV sing 301 n n C13 O2 NOV doub 302 n n C13 C14 NOV sing 303 n n C14 C15 NOV doub 304 n y C14 C19 NOV sing 305 n y C15 C16 NOV sing 306 n y C15 H15 NOV sing 307 n n C16 C17 NOV doub 308 n y C16 C20 NOV sing 309 n n C17 O3 NOV sing 310 n n C17 C18 NOV sing 311 n y O3 HO3 NOV sing 312 n n C18 C19 NOV doub 313 n y C18 H18 NOV sing 314 n n C19 H19 NOV sing 315 n n C20 C21 NOV sing 316 n n C20 H201 NOV sing 317 n n C20 H202 NOV sing 318 n n C21 C22 NOV doub 319 n n C21 H21 NOV sing 320 n n C22 C24 NOV sing 321 n n C22 C25 NOV sing 322 n n C24 H241 NOV sing 323 n n C24 H242 NOV sing 324 n n C24 H243 NOV sing 325 n n C25 H251 NOV sing 326 n n C25 H252 NOV sing 327 n n C25 H253 NOV sing 328 n n # _atom_sites.entry_id 6TBE _atom_sites.fract_transf_matrix[1][1] 0.010445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NOV A 1 201 1 NOV 209 . C 3 EDO A 1 202 3 EDO EG . D 3 EDO A 1 203 6 EDO EG . E 4 HOH A 1 301 28 HOH HOH . E 4 HOH A 2 302 54 HOH HOH . E 4 HOH A 3 303 69 HOH HOH . E 4 HOH A 4 304 38 HOH HOH . E 4 HOH A 5 305 117 HOH HOH . E 4 HOH A 6 306 99 HOH HOH . E 4 HOH A 7 307 23 HOH HOH . E 4 HOH A 8 308 106 HOH HOH . E 4 HOH A 9 309 42 HOH HOH . E 4 HOH A 10 310 13 HOH HOH . E 4 HOH A 11 311 83 HOH HOH . E 4 HOH A 12 312 27 HOH HOH . E 4 HOH A 13 313 53 HOH HOH . E 4 HOH A 14 314 19 HOH HOH . E 4 HOH A 15 315 12 HOH HOH . E 4 HOH A 16 316 44 HOH HOH . E 4 HOH A 17 317 76 HOH HOH . E 4 HOH A 18 318 20 HOH HOH . E 4 HOH A 19 319 86 HOH HOH . E 4 HOH A 20 320 79 HOH HOH . E 4 HOH A 21 321 108 HOH HOH . E 4 HOH A 22 322 3 HOH HOH . E 4 HOH A 23 323 131 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 1 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 6 HOH HOH . E 4 HOH A 28 328 29 HOH HOH . E 4 HOH A 29 329 58 HOH HOH . E 4 HOH A 30 330 22 HOH HOH . E 4 HOH A 31 331 8 HOH HOH . E 4 HOH A 32 332 17 HOH HOH . E 4 HOH A 33 333 30 HOH HOH . E 4 HOH A 34 334 47 HOH HOH . E 4 HOH A 35 335 7 HOH HOH . E 4 HOH A 36 336 60 HOH HOH . E 4 HOH A 37 337 128 HOH HOH . E 4 HOH A 38 338 129 HOH HOH . E 4 HOH A 39 339 5 HOH HOH . E 4 HOH A 40 340 66 HOH HOH . E 4 HOH A 41 341 74 HOH HOH . E 4 HOH A 42 342 130 HOH HOH . E 4 HOH A 43 343 18 HOH HOH . E 4 HOH A 44 344 77 HOH HOH . E 4 HOH A 45 345 98 HOH HOH . E 4 HOH A 46 346 59 HOH HOH . E 4 HOH A 47 347 56 HOH HOH . E 4 HOH A 48 348 25 HOH HOH . E 4 HOH A 49 349 40 HOH HOH . E 4 HOH A 50 350 11 HOH HOH . E 4 HOH A 51 351 36 HOH HOH . E 4 HOH A 52 352 37 HOH HOH . E 4 HOH A 53 353 34 HOH HOH . E 4 HOH A 54 354 71 HOH HOH . E 4 HOH A 55 355 2 HOH HOH . E 4 HOH A 56 356 45 HOH HOH . E 4 HOH A 57 357 90 HOH HOH . E 4 HOH A 58 358 41 HOH HOH . E 4 HOH A 59 359 120 HOH HOH . E 4 HOH A 60 360 15 HOH HOH . E 4 HOH A 61 361 32 HOH HOH . E 4 HOH A 62 362 4 HOH HOH . E 4 HOH A 63 363 110 HOH HOH . E 4 HOH A 64 364 14 HOH HOH . E 4 HOH A 65 365 101 HOH HOH . E 4 HOH A 66 366 55 HOH HOH . E 4 HOH A 67 367 16 HOH HOH . E 4 HOH A 68 368 9 HOH HOH . E 4 HOH A 69 369 43 HOH HOH . E 4 HOH A 70 370 48 HOH HOH . E 4 HOH A 71 371 21 HOH HOH . E 4 HOH A 72 372 103 HOH HOH . E 4 HOH A 73 373 91 HOH HOH . E 4 HOH A 74 374 97 HOH HOH . E 4 HOH A 75 375 94 HOH HOH . E 4 HOH A 76 376 102 HOH HOH . E 4 HOH A 77 377 127 HOH HOH . E 4 HOH A 78 378 51 HOH HOH . E 4 HOH A 79 379 64 HOH HOH . E 4 HOH A 80 380 75 HOH HOH . E 4 HOH A 81 381 126 HOH HOH . E 4 HOH A 82 382 121 HOH HOH . E 4 HOH A 83 383 114 HOH HOH . E 4 HOH A 84 384 57 HOH HOH . E 4 HOH A 85 385 112 HOH HOH . E 4 HOH A 86 386 73 HOH HOH . E 4 HOH A 87 387 124 HOH HOH . E 4 HOH A 88 388 62 HOH HOH . E 4 HOH A 89 389 80 HOH HOH . E 4 HOH A 90 390 39 HOH HOH . E 4 HOH A 91 391 100 HOH HOH . E 4 HOH A 92 392 61 HOH HOH . E 4 HOH A 93 393 82 HOH HOH . E 4 HOH A 94 394 123 HOH HOH . E 4 HOH A 95 395 95 HOH HOH . E 4 HOH A 96 396 35 HOH HOH . E 4 HOH A 97 397 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NOV . . . B 2 11.51 12.425 -8.925 1 25.58 ? C1 NOV 201 A 1 HETATM 2 O O1 NOV . . . B 2 12.08 13.566 -8.255 1 25.07 ? O1 NOV 201 A 1 HETATM 3 N N1 NOV . . . B 2 14.397 15.437 -11.876 1 32.43 ? N1 NOV 201 A 1 HETATM 4 C C12 NOV . . . B 2 13.944 15.797 -10.603 1 35.32 ? C12 NOV 201 A 1 HETATM 5 O O4 NOV . . . B 2 14.701 16.318 -9.768 1 33.79 ? O4 NOV 201 A 1 HETATM 6 O O5 NOV . . . B 2 12.616 15.564 -10.231 1 32.03 ? O5 NOV 201 A 1 HETATM 7 C C27 NOV . . . B 2 11.284 14.753 -8.299 1 23.84 ? C27 NOV 201 A 1 HETATM 8 C C28 NOV . . . B 2 12.138 15.953 -8.939 1 30.77 ? C28 NOV 201 A 1 HETATM 9 C C29 NOV . . . B 2 11.161 17.191 -9.048 1 28.65 ? C29 NOV 201 A 1 HETATM 10 O O6 NOV . . . B 2 10.091 16.875 -9.879 1 34.73 ? O6 NOV 201 A 1 HETATM 11 C C30 NOV . . . B 2 10.652 17.582 -7.575 1 27.59 ? C30 NOV 201 A 1 HETATM 12 O O7 NOV . . . B 2 10.125 16.432 -6.912 1 27.96 ? O7 NOV 201 A 1 HETATM 13 C C31 NOV . . . B 2 10.766 15.141 -6.852 1 22.51 ? C31 NOV 201 A 1 HETATM 14 C C23 NOV . . . B 2 9.699 14.09 -6.449 1 28.2 ? C23 NOV 201 A 1 HETATM 15 C C26 NOV . . . B 2 11.916 15.11 -5.809 1 22.98 ? C26 NOV 201 A 1 HETATM 16 O O8 NOV . . . B 2 11.841 18.035 -6.96 1 32.1 ? O8 NOV 201 A 1 HETATM 17 C C3 NOV . . . B 2 11.82 18.403 -5.618 1 28.16 ? C3 NOV 201 A 1 HETATM 18 C C4 NOV . . . B 2 13.015 18.824 -5.04 1 26.08 ? C4 NOV 201 A 1 HETATM 19 C C2 NOV . . . B 2 14.285 18.913 -5.8 1 28.66 ? C2 NOV 201 A 1 HETATM 20 C C5 NOV . . . B 2 12.98 19.209 -3.627 1 22.35 ? C5 NOV 201 A 1 HETATM 21 C C9 NOV . . . B 2 11.812 19.134 -2.875 1 23.5 ? C9 NOV 201 A 1 HETATM 22 C C10 NOV . . . B 2 10.629 18.675 -3.544 1 23.89 ? C10 NOV 201 A 1 HETATM 23 C C11 NOV . . . B 2 10.651 18.33 -4.89 1 28.3 ? C11 NOV 201 A 1 HETATM 24 O O10 NOV . . . B 2 14.152 19.613 -3.094 1 27.97 ? O10 NOV 201 A 1 HETATM 25 C C6 NOV . . . B 2 14.222 19.972 -1.772 1 25.62 ? C6 NOV 201 A 1 HETATM 26 O O11 NOV . . . B 2 15.381 20.3 -1.465 1 28.1 ? O11 NOV 201 A 1 HETATM 27 C C7 NOV . . . B 2 13.022 19.95 -0.848 1 20.1 ? C7 NOV 201 A 1 HETATM 28 C C8 NOV . . . B 2 11.858 19.523 -1.427 1 23.97 ? C8 NOV 201 A 1 HETATM 29 O O9 NOV . . . B 2 10.678 19.408 -0.778 1 22.27 ? O9 NOV 201 A 1 HETATM 30 N N2 NOV . . . B 2 13.246 20.335 0.47 1 21.82 ? N2 NOV 201 A 1 HETATM 31 C C13 NOV . . . B 2 13.836 21.451 1.073 1 26.36 ? C13 NOV 201 A 1 HETATM 32 O O2 NOV . . . B 2 14.301 22.321 0.344 1 24.76 ? O2 NOV 201 A 1 HETATM 33 C C14 NOV . . . B 2 13.903 21.551 2.62 1 18.6 ? C14 NOV 201 A 1 HETATM 34 C C15 NOV . . . B 2 12.865 20.901 3.352 1 19.93 ? C15 NOV 201 A 1 HETATM 35 C C16 NOV . . . B 2 12.802 20.882 4.777 1 20.79 ? C16 NOV 201 A 1 HETATM 36 C C17 NOV . . . B 2 13.872 21.56 5.462 1 25.52 ? C17 NOV 201 A 1 HETATM 37 O O3 NOV . . . B 2 13.853 21.552 6.845 1 26.2 ? O3 NOV 201 A 1 HETATM 38 C C18 NOV . . . B 2 14.92 22.194 4.756 1 28.51 ? C18 NOV 201 A 1 HETATM 39 C C19 NOV . . . B 2 14.937 22.182 3.333 1 25.96 ? C19 NOV 201 A 1 HETATM 40 C C20 NOV . . . B 2 11.594 20.175 5.485 1 22.86 ? C20 NOV 201 A 1 HETATM 41 C C21 NOV . . . B 2 10.219 20.825 5.046 1 21.85 ? C21 NOV 201 A 1 HETATM 42 C C22 NOV . . . B 2 8.926 20.348 5.775 1 23.36 ? C22 NOV 201 A 1 HETATM 43 C C24 NOV . . . B 2 7.699 21.165 5.326 1 24.19 ? C24 NOV 201 A 1 HETATM 44 C C25 NOV . . . B 2 8.717 18.852 5.394 1 23.42 ? C25 NOV 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 44 #