data_6TBU # _model_server_result.job_id '_VXVfBCoQRxFx4cHPIIXQw' _model_server_result.datetime_utc '2025-03-05 19:03:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1501}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . C 3 124.353 107.72 117.809 1 55.1 ? CAA Y01 1501 A 1 HETATM 2 C CBA Y01 . . . C 3 124.962 106.842 116.687 1 55.1 ? CBA Y01 1501 A 1 HETATM 3 C CAB Y01 . . . C 3 125.72 105.642 117.332 1 55.1 ? CAB Y01 1501 A 1 HETATM 4 C CAN Y01 . . . C 3 125.89 107.691 115.722 1 55.1 ? CAN Y01 1501 A 1 HETATM 5 C CAJ Y01 . . . C 3 126.693 108.86 116.407 1 55.1 ? CAJ Y01 1501 A 1 HETATM 6 C CAO Y01 . . . C 3 127.894 109.47 115.616 1 55.1 ? CAO Y01 1501 A 1 HETATM 7 C CBB Y01 . . . C 3 129.309 109.039 116.196 1 55.1 ? CBB Y01 1501 A 1 HETATM 8 C CAC Y01 . . . C 3 129.495 107.481 116.142 1 55.1 ? CAC Y01 1501 A 1 HETATM 9 C CBE Y01 . . . C 3 130.465 109.819 115.469 1 55.1 ? CBE Y01 1501 A 1 HETATM 10 C CAP Y01 . . . C 3 130.316 111.383 115.29 1 55.1 ? CAP Y01 1501 A 1 HETATM 11 C CAQ Y01 . . . C 3 131.662 111.997 115.09 1 55.1 ? CAQ Y01 1501 A 1 HETATM 12 C CBG Y01 . . . C 3 132.456 110.657 115.086 1 55.1 ? CBG Y01 1501 A 1 HETATM 13 C CBI Y01 . . . C 3 131.803 109.819 116.205 1 55.1 ? CBI Y01 1501 A 1 HETATM 14 C CAE Y01 . . . C 3 131.778 110.419 117.734 1 55.1 ? CAE Y01 1501 A 1 HETATM 15 C CAU Y01 . . . C 3 132.462 108.465 116.329 1 55.1 ? CAU Y01 1501 A 1 HETATM 16 C CAS Y01 . . . C 3 133.936 108.549 116.536 1 55.1 ? CAS Y01 1501 A 1 HETATM 17 C CBF Y01 . . . C 3 134.652 109.394 115.525 1 55.1 ? CBF Y01 1501 A 1 HETATM 18 C CBD Y01 . . . C 3 133.958 110.836 115.373 1 55.1 ? CBD Y01 1501 A 1 HETATM 19 C CAK Y01 . . . C 3 134.597 111.848 114.295 1 55.1 ? CAK Y01 1501 A 1 HETATM 20 C CAI Y01 . . . C 3 135.95 111.097 114.195 1 55.1 ? CAI Y01 1501 A 1 HETATM 21 C CAZ Y01 . . . C 3 136.718 110.657 115.192 1 55.1 ? CAZ Y01 1501 A 1 HETATM 22 C CAV Y01 . . . C 3 138.298 110.618 115.318 1 55.1 ? CAV Y01 1501 A 1 HETATM 23 C CBH Y01 . . . C 3 136.109 109.595 116.028 1 55.1 ? CBH Y01 1501 A 1 HETATM 24 C CAD Y01 . . . C 3 136.184 110.416 117.407 1 55.1 ? CAD Y01 1501 A 1 HETATM 25 C CAT Y01 . . . C 3 136.89 108.269 116.033 1 55.1 ? CAT Y01 1501 A 1 HETATM 26 C CAR Y01 . . . C 3 138.397 108.345 116.364 1 55.1 ? CAR Y01 1501 A 1 HETATM 27 C CBC Y01 . . . C 3 139.16 109.259 115.434 1 55.1 ? CBC Y01 1501 A 1 HETATM 28 O OAW Y01 . . . C 3 140.528 109.379 115.941 1 55.1 ? OAW Y01 1501 A 1 HETATM 29 C CAY Y01 . . . C 3 141.664 109.415 115.099 1 55.1 ? CAY Y01 1501 A 1 HETATM 30 O OAG Y01 . . . C 3 142.435 110.321 115.347 1 55.1 ? OAG Y01 1501 A 1 HETATM 31 C CAM Y01 . . . C 3 142.012 108.42 113.911 1 55.1 ? CAM Y01 1501 A 1 HETATM 32 C CAL Y01 . . . C 3 141.924 109.066 112.489 1 55.1 ? CAL Y01 1501 A 1 HETATM 33 C CAX Y01 . . . C 3 143.337 109.667 111.941 1 55.1 ? CAX Y01 1501 A 1 HETATM 34 O OAH Y01 . . . C 3 144.16 110.068 112.786 1 55.1 ? OAH Y01 1501 A 1 HETATM 35 O OAF Y01 . . . C 3 143.515 109.692 110.708 1 55.1 ? OAF Y01 1501 A 1 HETATM 36 H HAA1 Y01 . . . C 3 123.997 108.566 117.5 1 55.1 ? HAA1 Y01 1501 A 1 HETATM 37 H HAA2 Y01 . . . C 3 124.988 107.959 118.499 1 55.1 ? HAA2 Y01 1501 A 1 HETATM 38 H HAA3 Y01 . . . C 3 123.627 107.284 118.265 1 55.1 ? HAA3 Y01 1501 A 1 HETATM 39 H HBA Y01 . . . C 3 124.231 106.486 116.161 1 55.1 ? HBA Y01 1501 A 1 HETATM 40 H HAB1 Y01 . . . C 3 126.074 105.024 116.674 1 55.1 ? HAB1 Y01 1501 A 1 HETATM 41 H HAB2 Y01 . . . C 3 125.162 105.109 117.92 1 55.1 ? HAB2 Y01 1501 A 1 HETATM 42 H HAB3 Y01 . . . C 3 126.477 105.896 117.88 1 55.1 ? HAB3 Y01 1501 A 1 HETATM 43 H HAN1 Y01 . . . C 3 125.353 108.056 115.002 1 55.1 ? HAN1 Y01 1501 A 1 HETATM 44 H HAN2 Y01 . . . C 3 126.507 107.098 115.273 1 55.1 ? HAN2 Y01 1501 A 1 HETATM 45 H HAJ1 Y01 . . . C 3 127.026 108.552 117.263 1 55.1 ? HAJ1 Y01 1501 A 1 HETATM 46 H HAJ2 Y01 . . . C 3 126.078 109.572 116.63 1 55.1 ? HAJ2 Y01 1501 A 1 HETATM 47 H HAO1 Y01 . . . C 3 127.809 110.429 115.597 1 55.1 ? HAO1 Y01 1501 A 1 HETATM 48 H HAO2 Y01 . . . C 3 127.802 109.239 114.679 1 55.1 ? HAO2 Y01 1501 A 1 HETATM 49 H HBB Y01 . . . C 3 129.394 109.33 117.101 1 55.1 ? HBB Y01 1501 A 1 HETATM 50 H HAC1 Y01 . . . C 3 130.076 107.139 115.446 1 55.1 ? HAC1 Y01 1501 A 1 HETATM 51 H HAC2 Y01 . . . C 3 128.688 106.972 116.02 1 55.1 ? HAC2 Y01 1501 A 1 HETATM 52 H HAC3 Y01 . . . C 3 129.891 107.156 116.965 1 55.1 ? HAC3 Y01 1501 A 1 HETATM 53 H HBE Y01 . . . C 3 130.569 109.358 114.624 1 55.1 ? HBE Y01 1501 A 1 HETATM 54 H HAP1 Y01 . . . C 3 129.743 111.555 114.527 1 55.1 ? HAP1 Y01 1501 A 1 HETATM 55 H HAP2 Y01 . . . C 3 129.844 111.727 116.062 1 55.1 ? HAP2 Y01 1501 A 1 HETATM 56 H HAQ1 Y01 . . . C 3 132.077 112.579 115.737 1 55.1 ? HAQ1 Y01 1501 A 1 HETATM 57 H HAQ2 Y01 . . . C 3 131.827 112.551 114.324 1 55.1 ? HAQ2 Y01 1501 A 1 HETATM 58 H HBG Y01 . . . C 3 132.681 110.168 114.292 1 55.1 ? HBG Y01 1501 A 1 HETATM 59 H HBD Y01 . . . C 3 133.85 111.27 116.21 1 55.1 ? HBD Y01 1501 A 1 HETATM 60 H HAE1 Y01 . . . C 3 131.373 109.71 118.247 1 55.1 ? HAE1 Y01 1501 A 1 HETATM 61 H HAE2 Y01 . . . C 3 131.308 111.239 117.936 1 55.1 ? HAE2 Y01 1501 A 1 HETATM 62 H HAE3 Y01 . . . C 3 132.66 110.629 118.059 1 55.1 ? HAE3 Y01 1501 A 1 HETATM 63 H HAU1 Y01 . . . C 3 132.444 108.101 115.431 1 55.1 ? HAU1 Y01 1501 A 1 HETATM 64 H HAU2 Y01 . . . C 3 132.149 107.921 117.06 1 55.1 ? HAU2 Y01 1501 A 1 HETATM 65 H HAS1 Y01 . . . C 3 134.094 107.599 116.431 1 55.1 ? HAS1 Y01 1501 A 1 HETATM 66 H HAS2 Y01 . . . C 3 133.917 108.827 117.437 1 55.1 ? HAS2 Y01 1501 A 1 HETATM 67 H HBF Y01 . . . C 3 134.503 108.971 114.642 1 55.1 ? HBF Y01 1501 A 1 HETATM 68 H HAK1 Y01 . . . C 3 134.405 112.657 114.88 1 55.1 ? HAK1 Y01 1501 A 1 HETATM 69 H HAK2 Y01 . . . C 3 133.958 111.798 113.763 1 55.1 ? HAK2 Y01 1501 A 1 HETATM 70 H HAI Y01 . . . C 3 135.954 110.692 113.395 1 55.1 ? HAI Y01 1501 A 1 HETATM 71 H HAV1 Y01 . . . C 3 138.633 111.095 114.55 1 55.1 ? HAV1 Y01 1501 A 1 HETATM 72 H HAV2 Y01 . . . C 3 138.557 111.126 116.096 1 55.1 ? HAV2 Y01 1501 A 1 HETATM 73 H HBC Y01 . . . C 3 139.168 108.794 114.585 1 55.1 ? HBC Y01 1501 A 1 HETATM 74 H HAD1 Y01 . . . C 3 135.326 110.524 117.812 1 55.1 ? HAD1 Y01 1501 A 1 HETATM 75 H HAD2 Y01 . . . C 3 136.564 111.307 117.367 1 55.1 ? HAD2 Y01 1501 A 1 HETATM 76 H HAD3 Y01 . . . C 3 136.763 109.967 118.034 1 55.1 ? HAD3 Y01 1501 A 1 HETATM 77 H HAT1 Y01 . . . C 3 136.826 107.862 115.159 1 55.1 ? HAT1 Y01 1501 A 1 HETATM 78 H HAT2 Y01 . . . C 3 136.494 107.626 116.631 1 55.1 ? HAT2 Y01 1501 A 1 HETATM 79 H HAR1 Y01 . . . C 3 138.83 107.483 116.297 1 55.1 ? HAR1 Y01 1501 A 1 HETATM 80 H HAR2 Y01 . . . C 3 138.543 108.662 117.254 1 55.1 ? HAR2 Y01 1501 A 1 HETATM 81 H HAM1 Y01 . . . C 3 141.437 107.641 113.943 1 55.1 ? HAM1 Y01 1501 A 1 HETATM 82 H HAM2 Y01 . . . C 3 142.912 108.084 114.04 1 55.1 ? HAM2 Y01 1501 A 1 HETATM 83 H HAL1 Y01 . . . C 3 141.269 109.78 112.47 1 55.1 ? HAL1 Y01 1501 A 1 HETATM 84 H HAL2 Y01 . . . C 3 141.599 108.421 111.842 1 55.1 ? HAL2 Y01 1501 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 84 #