data_6TBU # _model_server_result.job_id Z1i19VvUB55E1ypCcdsFuA _model_server_result.datetime_utc '2025-03-05 19:04:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1502}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . D 3 127.007 108.356 123.554 1 55.77 ? CAA Y01 1502 A 1 HETATM 2 C CBA Y01 . . . D 3 126.692 108.99 122.175 1 55.77 ? CBA Y01 1502 A 1 HETATM 3 C CAB Y01 . . . D 3 125.54 108.201 121.518 1 55.77 ? CAB Y01 1502 A 1 HETATM 4 C CAN Y01 . . . D 3 127.969 109.084 121.228 1 55.77 ? CAN Y01 1502 A 1 HETATM 5 C CAJ Y01 . . . D 3 128.99 107.888 121.291 1 55.77 ? CAJ Y01 1502 A 1 HETATM 6 C CAO Y01 . . . D 3 129.689 107.491 119.953 1 55.77 ? CAO Y01 1502 A 1 HETATM 7 C CBB Y01 . . . D 3 130.552 106.166 120.053 1 55.77 ? CBB Y01 1502 A 1 HETATM 8 C CAC Y01 . . . D 3 130.133 105.117 118.97 1 55.77 ? CAC Y01 1502 A 1 HETATM 9 C CBE Y01 . . . D 3 132.06 106.545 119.995 1 55.77 ? CBE Y01 1502 A 1 HETATM 10 C CAP Y01 . . . D 3 132.529 107.679 120.97 1 55.77 ? CAP Y01 1502 A 1 HETATM 11 C CAQ Y01 . . . D 3 133.963 107.512 121.296 1 55.77 ? CAQ Y01 1502 A 1 HETATM 12 C CBG Y01 . . . D 3 134.218 106.409 120.257 1 55.77 ? CBG Y01 1502 A 1 HETATM 13 C CBI Y01 . . . D 3 133.034 105.444 120.416 1 55.77 ? CBI Y01 1502 A 1 HETATM 14 C CAE Y01 . . . D 3 132.76 104.754 121.878 1 55.77 ? CAE Y01 1502 A 1 HETATM 15 C CAU Y01 . . . D 3 133.16 104.28 119.457 1 55.77 ? CAU Y01 1502 A 1 HETATM 16 C CAS Y01 . . . D 3 134.501 103.6 119.531 1 55.77 ? CAS Y01 1502 A 1 HETATM 17 C CBF Y01 . . . D 3 135.7 104.515 119.417 1 55.77 ? CBF Y01 1502 A 1 HETATM 18 C CBD Y01 . . . D 3 135.542 105.655 120.481 1 55.77 ? CBD Y01 1502 A 1 HETATM 19 C CAK Y01 . . . D 3 136.703 106.686 120.476 1 55.77 ? CAK Y01 1502 A 1 HETATM 20 C CAI Y01 . . . D 3 137.897 105.955 120.067 1 55.77 ? CAI Y01 1502 A 1 HETATM 21 C CAZ Y01 . . . D 3 138.105 104.642 119.84 1 55.77 ? CAZ Y01 1502 A 1 HETATM 22 C CAV Y01 . . . D 3 139.42 103.897 119.524 1 55.77 ? CAV Y01 1502 A 1 HETATM 23 C CBH Y01 . . . D 3 136.948 103.685 119.705 1 55.77 ? CBH Y01 1502 A 1 HETATM 24 C CAD Y01 . . . D 3 136.967 103.11 121.201 1 55.77 ? CAD Y01 1502 A 1 HETATM 25 C CAT Y01 . . . D 3 137.094 102.566 118.618 1 55.77 ? CAT Y01 1502 A 1 HETATM 26 C CAR Y01 . . . D 3 138.506 101.964 118.345 1 55.77 ? CAR Y01 1502 A 1 HETATM 27 C CBC Y01 . . . D 3 139.552 103.042 118.188 1 55.77 ? CBC Y01 1502 A 1 HETATM 28 O OAW Y01 . . . D 3 140.85 102.443 117.889 1 55.77 ? OAW Y01 1502 A 1 HETATM 29 C CAY Y01 . . . D 3 141.973 103.22 117.507 1 55.77 ? CAY Y01 1502 A 1 HETATM 30 O OAG Y01 . . . D 3 143.006 102.892 118.055 1 55.77 ? OAG Y01 1502 A 1 HETATM 31 C CAM Y01 . . . D 3 142.004 104.437 116.469 1 55.77 ? CAM Y01 1502 A 1 HETATM 32 C CAL Y01 . . . D 3 141.355 105.769 116.99 1 55.77 ? CAL Y01 1502 A 1 HETATM 33 C CAX Y01 . . . D 3 142.301 106.633 117.996 1 55.77 ? CAX Y01 1502 A 1 HETATM 34 O OAH Y01 . . . D 3 143.253 106.043 118.541 1 55.77 ? OAH Y01 1502 A 1 HETATM 35 O OAF Y01 . . . D 3 142.018 107.836 118.166 1 55.77 ? OAF Y01 1502 A 1 HETATM 36 H HAA1 Y01 . . . D 3 127.843 108.645 123.943 1 55.77 ? HAA1 Y01 1502 A 1 HETATM 37 H HAA2 Y01 . . . D 3 127.068 107.391 123.527 1 55.77 ? HAA2 Y01 1502 A 1 HETATM 38 H HAA3 Y01 . . . D 3 126.329 108.555 124.214 1 55.77 ? HAA3 Y01 1502 A 1 HETATM 39 H HBA Y01 . . . D 3 126.378 109.888 122.334 1 55.77 ? HBA Y01 1502 A 1 HETATM 40 H HAB1 Y01 . . . D 3 125.15 108.666 120.769 1 55.77 ? HAB1 Y01 1502 A 1 HETATM 41 H HAB2 Y01 . . . D 3 124.811 108.021 122.126 1 55.77 ? HAB2 Y01 1502 A 1 HETATM 42 H HAB3 Y01 . . . D 3 125.796 107.333 121.178 1 55.77 ? HAB3 Y01 1502 A 1 HETATM 43 H HAN1 Y01 . . . D 3 128.44 109.907 121.411 1 55.77 ? HAN1 Y01 1502 A 1 HETATM 44 H HAN2 Y01 . . . D 3 127.674 109.192 120.316 1 55.77 ? HAN2 Y01 1502 A 1 HETATM 45 H HAJ1 Y01 . . . D 3 128.544 107.102 121.635 1 55.77 ? HAJ1 Y01 1502 A 1 HETATM 46 H HAJ2 Y01 . . . D 3 129.665 108.092 121.95 1 55.77 ? HAJ2 Y01 1502 A 1 HETATM 47 H HAO1 Y01 . . . D 3 130.223 108.22 119.62 1 55.77 ? HAO1 Y01 1502 A 1 HETATM 48 H HAO2 Y01 . . . D 3 129.014 107.423 119.264 1 55.77 ? HAO2 Y01 1502 A 1 HETATM 49 H HBB Y01 . . . D 3 130.46 105.778 120.923 1 55.77 ? HBB Y01 1502 A 1 HETATM 50 H HAC1 Y01 . . . D 3 130.609 105.147 118.125 1 55.77 ? HAC1 Y01 1502 A 1 HETATM 51 H HAC2 Y01 . . . D 3 129.204 105.164 118.698 1 55.77 ? HAC2 Y01 1502 A 1 HETATM 52 H HAC3 Y01 . . . D 3 130.267 104.213 119.296 1 55.77 ? HAC3 Y01 1502 A 1 HETATM 53 H HBE Y01 . . . D 3 132.217 106.768 119.072 1 55.77 ? HBE Y01 1502 A 1 HETATM 54 H HAP1 Y01 . . . D 3 132.376 108.533 120.541 1 55.77 ? HAP1 Y01 1502 A 1 HETATM 55 H HAP2 Y01 . . . D 3 131.953 107.658 121.742 1 55.77 ? HAP2 Y01 1502 A 1 HETATM 56 H HAQ1 Y01 . . . D 3 134.28 107.182 122.147 1 55.77 ? HAQ1 Y01 1502 A 1 HETATM 57 H HAQ2 Y01 . . . D 3 134.562 108.264 121.231 1 55.77 ? HAQ2 Y01 1502 A 1 HETATM 58 H HBG Y01 . . . D 3 134.469 106.592 119.371 1 55.77 ? HBG Y01 1502 A 1 HETATM 59 H HBD Y01 . . . D 3 135.353 105.34 121.36 1 55.77 ? HBD Y01 1502 A 1 HETATM 60 H HAE1 Y01 . . . D 3 131.984 104.197 121.722 1 55.77 ? HAE1 Y01 1502 A 1 HETATM 61 H HAE2 Y01 . . . D 3 132.58 105.303 122.657 1 55.77 ? HAE2 Y01 1502 A 1 HETATM 62 H HAE3 Y01 . . . D 3 133.512 104.239 122.189 1 55.77 ? HAE3 Y01 1502 A 1 HETATM 63 H HAU1 Y01 . . . D 3 133.232 104.688 118.58 1 55.77 ? HAU1 Y01 1502 A 1 HETATM 64 H HAU2 Y01 . . . D 3 132.522 103.563 119.594 1 55.77 ? HAU2 Y01 1502 A 1 HETATM 65 H HAS1 Y01 . . . D 3 134.352 103.032 118.759 1 55.77 ? HAS1 Y01 1502 A 1 HETATM 66 H HAS2 Y01 . . . D 3 134.351 103.163 120.364 1 55.77 ? HAS2 Y01 1502 A 1 HETATM 67 H HBF Y01 . . . D 3 135.698 105.001 118.586 1 55.77 ? HBF Y01 1502 A 1 HETATM 68 H HAK1 Y01 . . . D 3 136.616 107.059 121.359 1 55.77 ? HAK1 Y01 1502 A 1 HETATM 69 H HAK2 Y01 . . . D 3 136.363 107.408 119.957 1 55.77 ? HAK2 Y01 1502 A 1 HETATM 70 H HAI Y01 . . . D 3 138.585 106.564 120.159 1 55.77 ? HAI Y01 1502 A 1 HETATM 71 H HAV1 Y01 . . . D 3 140.12 104.566 119.519 1 55.77 ? HAV1 Y01 1502 A 1 HETATM 72 H HAV2 Y01 . . . D 3 139.61 103.272 120.239 1 55.77 ? HAV2 Y01 1502 A 1 HETATM 73 H HBC Y01 . . . D 3 139.252 103.56 117.426 1 55.77 ? HBC Y01 1502 A 1 HETATM 74 H HAD1 Y01 . . . D 3 137.154 102.158 121.183 1 55.77 ? HAD1 Y01 1502 A 1 HETATM 75 H HAD2 Y01 . . . D 3 136.181 103.227 121.748 1 55.77 ? HAD2 Y01 1502 A 1 HETATM 76 H HAD3 Y01 . . . D 3 137.657 103.546 121.726 1 55.77 ? HAD3 Y01 1502 A 1 HETATM 77 H HAT1 Y01 . . . D 3 136.783 102.914 117.767 1 55.77 ? HAT1 Y01 1502 A 1 HETATM 78 H HAT2 Y01 . . . D 3 136.495 101.827 118.806 1 55.77 ? HAT2 Y01 1502 A 1 HETATM 79 H HAR1 Y01 . . . D 3 138.534 101.446 117.526 1 55.77 ? HAR1 Y01 1502 A 1 HETATM 80 H HAR2 Y01 . . . D 3 138.79 101.381 119.066 1 55.77 ? HAR2 Y01 1502 A 1 HETATM 81 H HAM1 Y01 . . . D 3 141.57 104.182 115.639 1 55.77 ? HAM1 Y01 1502 A 1 HETATM 82 H HAM2 Y01 . . . D 3 142.925 104.62 116.232 1 55.77 ? HAM2 Y01 1502 A 1 HETATM 83 H HAL1 Y01 . . . D 3 140.518 105.599 117.442 1 55.77 ? HAL1 Y01 1502 A 1 HETATM 84 H HAL2 Y01 . . . D 3 141.114 106.341 116.246 1 55.77 ? HAL2 Y01 1502 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 144 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 84 #