data_6TBU # _model_server_result.job_id CEI4wsu80zi-T72Qga-XPA _model_server_result.datetime_utc '2025-03-05 18:40:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1503}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 3 109.806 108.464 105.755 1 48.82 ? CAA Y01 1503 A 1 HETATM 2 C CBA Y01 . . . E 3 110.037 107.42 106.888 1 48.82 ? CBA Y01 1503 A 1 HETATM 3 C CAB Y01 . . . E 3 110.338 106.04 106.252 1 48.82 ? CAB Y01 1503 A 1 HETATM 4 C CAN Y01 . . . E 3 108.839 107.352 107.951 1 48.82 ? CAN Y01 1503 A 1 HETATM 5 C CAJ Y01 . . . E 3 107.376 107.13 107.4 1 48.82 ? CAJ Y01 1503 A 1 HETATM 6 C CAO Y01 . . . E 3 106.811 105.674 107.464 1 48.82 ? CAO Y01 1503 A 1 HETATM 7 C CBB Y01 . . . E 3 106.026 105.218 106.17 1 48.82 ? CBB Y01 1503 A 1 HETATM 8 C CAC Y01 . . . E 3 106.888 104.24 105.31 1 48.82 ? CAC Y01 1503 A 1 HETATM 9 C CBE Y01 . . . E 3 104.637 104.665 106.603 1 48.82 ? CBE Y01 1503 A 1 HETATM 10 C CAP Y01 . . . E 3 103.682 105.721 107.284 1 48.82 ? CAP Y01 1503 A 1 HETATM 11 C CAQ Y01 . . . E 3 102.289 105.502 106.866 1 48.82 ? CAQ Y01 1503 A 1 HETATM 12 C CBG Y01 . . . E 3 102.532 104.063 106.377 1 48.82 ? CBG Y01 1503 A 1 HETATM 13 C CBI Y01 . . . E 3 103.755 104.162 105.457 1 48.82 ? CBI Y01 1503 A 1 HETATM 14 C CAE Y01 . . . E 3 103.694 105.118 104.132 1 48.82 ? CAE Y01 1503 A 1 HETATM 15 C CAU Y01 . . . E 3 104.105 102.786 104.922 1 48.82 ? CAU Y01 1503 A 1 HETATM 16 C CAS Y01 . . . E 3 102.947 102.092 104.265 1 48.82 ? CAS Y01 1503 A 1 HETATM 17 C CBF Y01 . . . E 3 101.67 102.039 105.075 1 48.82 ? CBF Y01 1503 A 1 HETATM 18 C CBD Y01 . . . E 3 101.337 103.478 105.597 1 48.82 ? CBD Y01 1503 A 1 HETATM 19 C CAK Y01 . . . E 3 100.082 103.52 106.504 1 48.82 ? CAK Y01 1503 A 1 HETATM 20 C CAI Y01 . . . E 3 99.212 102.449 106.039 1 48.82 ? CAI Y01 1503 A 1 HETATM 21 C CAZ Y01 . . . E 3 99.236 101.737 104.893 1 48.82 ? CAZ Y01 1503 A 1 HETATM 22 C CAV Y01 . . . E 3 98.126 100.848 104.238 1 48.82 ? CAV Y01 1503 A 1 HETATM 23 C CBH Y01 . . . E 3 100.539 101.544 104.159 1 48.82 ? CBH Y01 1503 A 1 HETATM 24 C CAD Y01 . . . E 3 100.256 102.557 102.949 1 48.82 ? CAD Y01 1503 A 1 HETATM 25 C CAT Y01 . . . E 3 100.811 100.092 103.679 1 48.82 ? CAT Y01 1503 A 1 HETATM 26 C CAR Y01 . . . E 3 99.65 99.358 102.969 1 48.82 ? CAR Y01 1503 A 1 HETATM 27 C CBC Y01 . . . E 3 98.394 99.327 103.815 1 48.82 ? CBC Y01 1503 A 1 HETATM 28 O OAW Y01 . . . E 3 97.338 98.646 103.074 1 48.82 ? OAW Y01 1503 A 1 HETATM 29 C CAY Y01 . . . E 3 96.734 97.463 103.541 1 48.82 ? CAY Y01 1503 A 1 HETATM 30 O OAG Y01 . . . E 3 95.53 97.544 103.677 1 48.82 ? OAG Y01 1503 A 1 HETATM 31 C CAM Y01 . . . E 3 97.461 96.093 103.891 1 48.82 ? CAM Y01 1503 A 1 HETATM 32 C CAL Y01 . . . E 3 97.069 95.502 105.286 1 48.82 ? CAL Y01 1503 A 1 HETATM 33 C CAX Y01 . . . E 3 95.588 94.822 105.333 1 48.82 ? CAX Y01 1503 A 1 HETATM 34 O OAH Y01 . . . E 3 94.847 94.986 104.346 1 48.82 ? OAH Y01 1503 A 1 HETATM 35 O OAF Y01 . . . E 3 95.279 94.178 106.355 1 48.82 ? OAF Y01 1503 A 1 HETATM 36 H HAA1 Y01 . . . E 3 109.416 109.298 106.053 1 48.82 ? HAA1 Y01 1503 A 1 HETATM 37 H HAA2 Y01 . . . E 3 109.217 108.151 105.054 1 48.82 ? HAA2 Y01 1503 A 1 HETATM 38 H HAA3 Y01 . . . E 3 110.628 108.71 105.306 1 48.82 ? HAA3 Y01 1503 A 1 HETATM 39 H HBA Y01 . . . E 3 110.83 107.693 107.368 1 48.82 ? HBA Y01 1503 A 1 HETATM 40 H HAB1 Y01 . . . E 3 110.32 105.321 106.897 1 48.82 ? HAB1 Y01 1503 A 1 HETATM 41 H HAB2 Y01 . . . E 3 111.21 105.999 105.836 1 48.82 ? HAB2 Y01 1503 A 1 HETATM 42 H HAB3 Y01 . . . E 3 109.725 105.78 105.555 1 48.82 ? HAB3 Y01 1503 A 1 HETATM 43 H HAN1 Y01 . . . E 3 108.85 108.154 108.495 1 48.82 ? HAN1 Y01 1503 A 1 HETATM 44 H HAN2 Y01 . . . E 3 109.032 106.65 108.58 1 48.82 ? HAN2 Y01 1503 A 1 HETATM 45 H HAJ1 Y01 . . . E 3 107.329 107.434 106.492 1 48.82 ? HAJ1 Y01 1503 A 1 HETATM 46 H HAJ2 Y01 . . . E 3 106.772 107.715 107.882 1 48.82 ? HAJ2 Y01 1503 A 1 HETATM 47 H HAO1 Y01 . . . E 3 106.255 105.569 108.242 1 48.82 ? HAO1 Y01 1503 A 1 HETATM 48 H HAO2 Y01 . . . E 3 107.541 105.071 107.664 1 48.82 ? HAO2 Y01 1503 A 1 HETATM 49 H HBB Y01 . . . E 3 105.781 105.978 105.64 1 48.82 ? HBB Y01 1503 A 1 HETATM 50 H HAC1 Y01 . . . E 3 106.848 103.303 105.547 1 48.82 ? HAC1 Y01 1503 A 1 HETATM 51 H HAC2 Y01 . . . E 3 107.834 104.427 105.321 1 48.82 ? HAC2 Y01 1503 A 1 HETATM 52 H HAC3 Y01 . . . E 3 106.628 104.267 104.382 1 48.82 ? HAC3 Y01 1503 A 1 HETATM 53 H HBE Y01 . . . E 3 104.837 103.925 107.188 1 48.82 ? HBE Y01 1503 A 1 HETATM 54 H HAP1 Y01 . . . E 3 103.766 105.631 108.241 1 48.82 ? HAP1 Y01 1503 A 1 HETATM 55 H HAP2 Y01 . . . E 3 104.017 106.602 107.071 1 48.82 ? HAP2 Y01 1503 A 1 HETATM 56 H HAQ1 Y01 . . . E 3 101.868 105.984 106.145 1 48.82 ? HAQ1 Y01 1503 A 1 HETATM 57 H HAQ2 Y01 . . . E 3 101.575 105.599 107.504 1 48.82 ? HAQ2 Y01 1503 A 1 HETATM 58 H HBG Y01 . . . E 3 102.531 103.315 106.949 1 48.82 ? HBG Y01 1503 A 1 HETATM 59 H HBD Y01 . . . E 3 101.3 104.142 104.918 1 48.82 ? HBD Y01 1503 A 1 HETATM 60 H HAE1 Y01 . . . E 3 104.555 104.984 103.718 1 48.82 ? HAE1 Y01 1503 A 1 HETATM 61 H HAE2 Y01 . . . E 3 103.549 106.073 104.219 1 48.82 ? HAE2 Y01 1503 A 1 HETATM 62 H HAE3 Y01 . . . E 3 102.974 104.879 103.538 1 48.82 ? HAE3 Y01 1503 A 1 HETATM 63 H HAU1 Y01 . . . E 3 104.201 102.23 105.708 1 48.82 ? HAU1 Y01 1503 A 1 HETATM 64 H HAU2 Y01 . . . E 3 104.795 102.768 104.245 1 48.82 ? HAU2 Y01 1503 A 1 HETATM 65 H HAS1 Y01 . . . E 3 103.396 101.237 104.175 1 48.82 ? HAS1 Y01 1503 A 1 HETATM 66 H HAS2 Y01 . . . E 3 102.953 102.605 103.467 1 48.82 ? HAS2 Y01 1503 A 1 HETATM 67 H HBF Y01 . . . E 3 101.803 101.557 105.897 1 48.82 ? HBF Y01 1503 A 1 HETATM 68 H HAK1 Y01 . . . E 3 99.84 104.443 106.423 1 48.82 ? HAK1 Y01 1503 A 1 HETATM 69 H HAK2 Y01 . . . E 3 100.441 103.517 107.376 1 48.82 ? HAK2 Y01 1503 A 1 HETATM 70 H HAI Y01 . . . E 3 98.532 102.392 106.667 1 48.82 ? HAI Y01 1503 A 1 HETATM 71 H HAV1 Y01 . . . E 3 97.382 100.847 104.86 1 48.82 ? HAV1 Y01 1503 A 1 HETATM 72 H HAV2 Y01 . . . E 3 97.821 101.275 103.424 1 48.82 ? HAV2 Y01 1503 A 1 HETATM 73 H HBC Y01 . . . E 3 98.637 98.799 104.59 1 48.82 ? HBC Y01 1503 A 1 HETATM 74 H HAD1 Y01 . . . E 3 100.187 102.062 102.117 1 48.82 ? HAD1 Y01 1503 A 1 HETATM 75 H HAD2 Y01 . . . E 3 100.884 103.274 102.796 1 48.82 ? HAD2 Y01 1503 A 1 HETATM 76 H HAD3 Y01 . . . E 3 99.426 103.037 103.09 1 48.82 ? HAD3 Y01 1503 A 1 HETATM 77 H HAT1 Y01 . . . E 3 101.053 99.542 104.439 1 48.82 ? HAT1 Y01 1503 A 1 HETATM 78 H HAT2 Y01 . . . E 3 101.581 100.05 103.093 1 48.82 ? HAT2 Y01 1503 A 1 HETATM 79 H HAR1 Y01 . . . E 3 99.864 98.432 102.777 1 48.82 ? HAR1 Y01 1503 A 1 HETATM 80 H HAR2 Y01 . . . E 3 99.426 99.783 102.127 1 48.82 ? HAR2 Y01 1503 A 1 HETATM 81 H HAM1 Y01 . . . E 3 98.424 96.202 103.851 1 48.82 ? HAM1 Y01 1503 A 1 HETATM 82 H HAM2 Y01 . . . E 3 97.243 95.44 103.208 1 48.82 ? HAM2 Y01 1503 A 1 HETATM 83 H HAL1 Y01 . . . E 3 97.109 96.182 105.974 1 48.82 ? HAL1 Y01 1503 A 1 HETATM 84 H HAL2 Y01 . . . E 3 97.715 94.836 105.568 1 48.82 ? HAL2 Y01 1503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 84 #