data_6TBU # _model_server_result.job_id U2Dk0T94hWt49KnAfX4ndw _model_server_result.datetime_utc '2025-03-05 19:15:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1504}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . F 3 114.369 131.214 145.119 1 51.87 ? CAA Y01 1504 A 1 HETATM 2 C CBA Y01 . . . F 3 114.045 130.148 146.214 1 51.87 ? CBA Y01 1504 A 1 HETATM 3 C CAB Y01 . . . F 3 114.874 128.858 145.933 1 51.87 ? CAB Y01 1504 A 1 HETATM 4 C CAN Y01 . . . F 3 112.47 129.875 146.36 1 51.87 ? CAN Y01 1504 A 1 HETATM 5 C CAJ Y01 . . . F 3 111.925 128.457 145.95 1 51.87 ? CAJ Y01 1504 A 1 HETATM 6 C CAO Y01 . . . F 3 112.185 127.257 146.937 1 51.87 ? CAO Y01 1504 A 1 HETATM 7 C CBB Y01 . . . F 3 110.893 126.416 147.31 1 51.87 ? CBB Y01 1504 A 1 HETATM 8 C CAC Y01 . . . F 3 111.18 124.887 147.401 1 51.87 ? CAC Y01 1504 A 1 HETATM 9 C CBE Y01 . . . F 3 110.289 126.991 148.627 1 51.87 ? CBE Y01 1504 A 1 HETATM 10 C CAP Y01 . . . F 3 110.216 128.55 148.763 1 51.87 ? CAP Y01 1504 A 1 HETATM 11 C CAQ Y01 . . . F 3 109.213 128.917 149.805 1 51.87 ? CAQ Y01 1504 A 1 HETATM 12 C CBG Y01 . . . F 3 108.834 127.462 150.18 1 51.87 ? CBG Y01 1504 A 1 HETATM 13 C CBI Y01 . . . F 3 108.815 126.693 148.845 1 51.87 ? CBI Y01 1504 A 1 HETATM 14 C CAE Y01 . . . F 3 107.81 127.214 147.647 1 51.87 ? CAE Y01 1504 A 1 HETATM 15 C CAU Y01 . . . F 3 108.485 125.24 149.09 1 51.87 ? CAU Y01 1504 A 1 HETATM 16 C CAS Y01 . . . F 3 107.216 125.065 149.889 1 51.87 ? CAS Y01 1504 A 1 HETATM 17 C CBF Y01 . . . F 3 107.119 125.851 151.175 1 51.87 ? CBF Y01 1504 A 1 HETATM 18 C CBD Y01 . . . F 3 107.459 127.351 150.862 1 51.87 ? CBD Y01 1504 A 1 HETATM 19 C CAK Y01 . . . F 3 107.448 128.267 152.117 1 51.87 ? CAK Y01 1504 A 1 HETATM 20 C CAI Y01 . . . F 3 106.47 127.688 153.047 1 51.87 ? CAI Y01 1504 A 1 HETATM 21 C CAZ Y01 . . . F 3 105.605 126.649 152.912 1 51.87 ? CAZ Y01 1504 A 1 HETATM 22 C CAV Y01 . . . F 3 104.362 126.244 153.79 1 51.87 ? CAV Y01 1504 A 1 HETATM 23 C CBH Y01 . . . F 3 105.678 125.75 151.704 1 51.87 ? CBH Y01 1504 A 1 HETATM 24 C CAD Y01 . . . F 3 104.628 126.542 150.8 1 51.87 ? CAD Y01 1504 A 1 HETATM 25 C CAT Y01 . . . F 3 105.26 124.275 151.95 1 51.87 ? CAT Y01 1504 A 1 HETATM 26 C CAR Y01 . . . F 3 103.962 124.035 152.75 1 51.87 ? CAR Y01 1504 A 1 HETATM 27 C CBC Y01 . . . F 3 103.997 124.712 154.1 1 51.87 ? CBC Y01 1504 A 1 HETATM 28 O OAW Y01 . . . F 3 102.74 124.441 154.797 1 51.87 ? OAW Y01 1504 A 1 HETATM 29 C CAY Y01 . . . F 3 102.507 123.246 155.515 1 51.87 ? CAY Y01 1504 A 1 HETATM 30 O OAG Y01 . . . F 3 101.459 122.697 155.235 1 51.87 ? OAG Y01 1504 A 1 HETATM 31 C CAM Y01 . . . F 3 103.453 122.58 156.608 1 51.87 ? CAM Y01 1504 A 1 HETATM 32 C CAL Y01 . . . F 3 104.38 123.597 157.36 1 51.87 ? CAL Y01 1504 A 1 HETATM 33 C CAX Y01 . . . F 3 103.646 124.995 157.763 1 51.87 ? CAX Y01 1504 A 1 HETATM 34 O OAH Y01 . . . F 3 103.1 125.059 158.881 1 51.87 ? OAH Y01 1504 A 1 HETATM 35 O OAF Y01 . . . F 3 103.673 125.922 156.931 1 51.87 ? OAF Y01 1504 A 1 HETATM 36 H HAA1 Y01 . . . F 3 114.579 132.095 145.47 1 51.87 ? HAA1 Y01 1504 A 1 HETATM 37 H HAA2 Y01 . . . F 3 113.647 131.364 144.493 1 51.87 ? HAA2 Y01 1504 A 1 HETATM 38 H HAA3 Y01 . . . F 3 115.134 130.966 144.577 1 51.87 ? HAA3 Y01 1504 A 1 HETATM 39 H HBA Y01 . . . F 3 114.352 130.508 147.057 1 51.87 ? HBA Y01 1504 A 1 HETATM 40 H HAB1 Y01 . . . F 3 114.809 128.208 146.647 1 51.87 ? HAB1 Y01 1504 A 1 HETATM 41 H HAB2 Y01 . . . F 3 115.821 129.032 145.823 1 51.87 ? HAB2 Y01 1504 A 1 HETATM 42 H HAB3 Y01 . . . F 3 114.621 128.385 145.131 1 51.87 ? HAB3 Y01 1504 A 1 HETATM 43 H HAN1 Y01 . . . F 3 111.984 130.547 145.864 1 51.87 ? HAN1 Y01 1504 A 1 HETATM 44 H HAN2 Y01 . . . F 3 112.213 130.047 147.273 1 51.87 ? HAN2 Y01 1504 A 1 HETATM 45 H HAJ1 Y01 . . . F 3 112.281 128.222 145.095 1 51.87 ? HAJ1 Y01 1504 A 1 HETATM 46 H HAJ2 Y01 . . . F 3 110.976 128.533 145.793 1 51.87 ? HAJ2 Y01 1504 A 1 HETATM 47 H HAO1 Y01 . . . F 3 112.616 127.572 147.744 1 51.87 ? HAO1 Y01 1504 A 1 HETATM 48 H HAO2 Y01 . . . F 3 112.875 126.697 146.558 1 51.87 ? HAO2 Y01 1504 A 1 HETATM 49 H HBB Y01 . . . F 3 110.212 126.556 146.672 1 51.87 ? HBB Y01 1504 A 1 HETATM 50 H HAC1 Y01 . . . F 3 111.415 124.537 148.274 1 51.87 ? HAC1 Y01 1504 A 1 HETATM 51 H HAC2 Y01 . . . F 3 111.904 124.577 146.835 1 51.87 ? HAC2 Y01 1504 A 1 HETATM 52 H HAC3 Y01 . . . F 3 110.4 124.376 147.134 1 51.87 ? HAC3 Y01 1504 A 1 HETATM 53 H HBE Y01 . . . F 3 110.808 126.578 149.332 1 51.87 ? HBE Y01 1504 A 1 HETATM 54 H HAP1 Y01 . . . F 3 111.092 128.884 148.997 1 51.87 ? HAP1 Y01 1504 A 1 HETATM 55 H HAP2 Y01 . . . F 3 110.011 128.904 147.897 1 51.87 ? HAP2 Y01 1504 A 1 HETATM 56 H HAQ1 Y01 . . . F 3 108.393 129.384 149.606 1 51.87 ? HAQ1 Y01 1504 A 1 HETATM 57 H HAQ2 Y01 . . . F 3 109.47 129.464 150.562 1 51.87 ? HAQ2 Y01 1504 A 1 HETATM 58 H HBG Y01 . . . F 3 109.22 127 150.905 1 51.87 ? HBG Y01 1504 A 1 HETATM 59 H HBD Y01 . . . F 3 106.952 127.721 150.155 1 51.87 ? HBD Y01 1504 A 1 HETATM 60 H HAE1 Y01 . . . F 3 107.267 126.461 147.421 1 51.87 ? HAE1 Y01 1504 A 1 HETATM 61 H HAE2 Y01 . . . F 3 108.169 127.568 146.828 1 51.87 ? HAE2 Y01 1504 A 1 HETATM 62 H HAE3 Y01 . . . F 3 107.288 127.961 147.934 1 51.87 ? HAE3 Y01 1504 A 1 HETATM 63 H HAU1 Y01 . . . F 3 109.131 124.952 149.752 1 51.87 ? HAU1 Y01 1504 A 1 HETATM 64 H HAU2 Y01 . . . F 3 108.358 124.698 148.296 1 51.87 ? HAU2 Y01 1504 A 1 HETATM 65 H HAS1 Y01 . . . F 3 107.322 124.11 150.014 1 51.87 ? HAS1 Y01 1504 A 1 HETATM 66 H HAS2 Y01 . . . F 3 106.616 125.295 149.2 1 51.87 ? HAS2 Y01 1504 A 1 HETATM 67 H HBF Y01 . . . F 3 107.821 125.602 151.791 1 51.87 ? HBF Y01 1504 A 1 HETATM 68 H HAK1 Y01 . . . F 3 107.309 129.128 151.706 1 51.87 ? HAK1 Y01 1504 A 1 HETATM 69 H HAK2 Y01 . . . F 3 108.37 128.344 152.351 1 51.87 ? HAK2 Y01 1504 A 1 HETATM 70 H HAI Y01 . . . F 3 106.48 128.254 153.783 1 51.87 ? HAI Y01 1504 A 1 HETATM 71 H HAV1 Y01 . . . F 3 104.479 126.689 154.641 1 51.87 ? HAV1 Y01 1504 A 1 HETATM 72 H HAV2 Y01 . . . F 3 103.56 126.604 153.385 1 51.87 ? HAV2 Y01 1504 A 1 HETATM 73 H HBC Y01 . . . F 3 104.727 124.282 154.567 1 51.87 ? HBC Y01 1504 A 1 HETATM 74 H HAD1 Y01 . . . F 3 104.726 126.31 149.877 1 51.87 ? HAD1 Y01 1504 A 1 HETATM 75 H HAD2 Y01 . . . F 3 104.64 127.51 150.852 1 51.87 ? HAD2 Y01 1504 A 1 HETATM 76 H HAD3 Y01 . . . F 3 103.723 126.327 151.065 1 51.87 ? HAD3 Y01 1504 A 1 HETATM 77 H HAT1 Y01 . . . F 3 105.965 123.818 152.431 1 51.87 ? HAT1 Y01 1504 A 1 HETATM 78 H HAT2 Y01 . . . F 3 105.17 123.79 151.121 1 51.87 ? HAT2 Y01 1504 A 1 HETATM 79 H HAR1 Y01 . . . F 3 103.807 123.095 152.927 1 51.87 ? HAR1 Y01 1504 A 1 HETATM 80 H HAR2 Y01 . . . F 3 103.189 124.369 152.276 1 51.87 ? HAR2 Y01 1504 A 1 HETATM 81 H HAM1 Y01 . . . F 3 104.002 121.889 156.205 1 51.87 ? HAM1 Y01 1504 A 1 HETATM 82 H HAM2 Y01 . . . F 3 102.901 122.124 157.263 1 51.87 ? HAM2 Y01 1504 A 1 HETATM 83 H HAL1 Y01 . . . F 3 105.165 123.812 156.833 1 51.87 ? HAL1 Y01 1504 A 1 HETATM 84 H HAL2 Y01 . . . F 3 104.735 123.199 158.17 1 51.87 ? HAL2 Y01 1504 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 84 #