data_6TBU # _model_server_result.job_id 3F8nt_Wc13DYw3qfzyc-6w _model_server_result.datetime_utc '2025-03-05 19:07:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1505}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 3 119.021 120.812 137.676 1 52.44 ? CAA Y01 1505 A 1 HETATM 2 C CBA Y01 . . . G 3 119.112 119.515 138.539 1 52.44 ? CBA Y01 1505 A 1 HETATM 3 C CAB Y01 . . . G 3 118.561 119.799 139.965 1 52.44 ? CAB Y01 1505 A 1 HETATM 4 C CAN Y01 . . . G 3 120.578 118.906 138.575 1 52.44 ? CAN Y01 1505 A 1 HETATM 5 C CAJ Y01 . . . G 3 121.715 119.836 139.125 1 52.44 ? CAJ Y01 1505 A 1 HETATM 6 C CAO Y01 . . . G 3 122.334 119.463 140.509 1 52.44 ? CAO Y01 1505 A 1 HETATM 7 C CBB Y01 . . . G 3 123.824 119.947 140.69 1 52.44 ? CBB Y01 1505 A 1 HETATM 8 C CAC Y01 . . . G 3 124.057 120.619 142.083 1 52.44 ? CAC Y01 1505 A 1 HETATM 9 C CBE Y01 . . . G 3 124.768 118.735 140.419 1 52.44 ? CBE Y01 1505 A 1 HETATM 10 C CAP Y01 . . . G 3 124.505 117.907 139.112 1 52.44 ? CAP Y01 1505 A 1 HETATM 11 C CAQ Y01 . . . G 3 125.702 117.088 138.801 1 52.44 ? CAQ Y01 1505 A 1 HETATM 12 C CBG Y01 . . . G 3 126.581 117.599 139.967 1 52.44 ? CBG Y01 1505 A 1 HETATM 13 C CBI Y01 . . . G 3 126.226 119.089 140.161 1 52.44 ? CBI Y01 1505 A 1 HETATM 14 C CAE Y01 . . . G 3 126.497 120.162 138.953 1 52.44 ? CAE Y01 1505 A 1 HETATM 15 C CAU Y01 . . . G 3 126.984 119.645 141.346 1 52.44 ? CAU Y01 1505 A 1 HETATM 16 C CAS Y01 . . . G 3 128.468 119.422 141.242 1 52.44 ? CAS Y01 1505 A 1 HETATM 17 C CBF Y01 . . . G 3 128.918 118.012 140.912 1 52.44 ? CBF Y01 1505 A 1 HETATM 18 C CBD Y01 . . . G 3 128.088 117.465 139.689 1 52.44 ? CBD Y01 1505 A 1 HETATM 19 C CAK Y01 . . . G 3 128.409 115.987 139.341 1 52.44 ? CAK Y01 1505 A 1 HETATM 20 C CAI Y01 . . . G 3 129.811 115.793 139.709 1 52.44 ? CAI Y01 1505 A 1 HETATM 21 C CAZ Y01 . . . G 3 130.781 116.697 139.993 1 52.44 ? CAZ Y01 1505 A 1 HETATM 22 C CAV Y01 . . . G 3 132.344 116.535 140.03 1 52.44 ? CAV Y01 1505 A 1 HETATM 23 C CBH Y01 . . . G 3 130.408 118.057 140.535 1 52.44 ? CBH Y01 1505 A 1 HETATM 24 C CAD Y01 . . . G 3 130.661 118.893 139.207 1 52.44 ? CAD Y01 1505 A 1 HETATM 25 C CAT Y01 . . . G 3 131.279 118.556 141.724 1 52.44 ? CAT Y01 1505 A 1 HETATM 26 C CAR Y01 . . . G 3 132.815 118.4 141.583 1 52.44 ? CAR Y01 1505 A 1 HETATM 27 C CBC Y01 . . . G 3 133.211 116.967 141.307 1 52.44 ? CBC Y01 1505 A 1 HETATM 28 O OAW Y01 . . . G 3 134.666 116.884 141.191 1 52.44 ? OAW Y01 1505 A 1 HETATM 29 C CAY Y01 . . . G 3 135.321 115.714 140.74 1 52.44 ? CAY Y01 1505 A 1 HETATM 30 O OAG Y01 . . . G 3 136.094 115.903 139.822 1 52.44 ? OAG Y01 1505 A 1 HETATM 31 C CAM Y01 . . . G 3 135.143 114.234 141.306 1 52.44 ? CAM Y01 1505 A 1 HETATM 32 C CAL Y01 . . . G 3 134.813 113.162 140.212 1 52.44 ? CAL Y01 1505 A 1 HETATM 33 C CAX Y01 . . . G 3 136.087 112.736 139.287 1 52.44 ? CAX Y01 1505 A 1 HETATM 34 O OAH Y01 . . . G 3 136.787 111.781 139.674 1 52.44 ? OAH Y01 1505 A 1 HETATM 35 O OAF Y01 . . . G 3 136.289 113.389 138.243 1 52.44 ? OAF Y01 1505 A 1 HETATM 36 H HAA1 Y01 . . . G 3 118.546 120.704 136.843 1 52.44 ? HAA1 Y01 1505 A 1 HETATM 37 H HAA2 Y01 . . . G 3 119.881 121.172 137.422 1 52.44 ? HAA2 Y01 1505 A 1 HETATM 38 H HAA3 Y01 . . . G 3 118.565 121.528 138.133 1 52.44 ? HAA3 Y01 1505 A 1 HETATM 39 H HBA Y01 . . . G 3 118.536 118.856 138.131 1 52.44 ? HBA Y01 1505 A 1 HETATM 40 H HAB1 Y01 . . . G 3 118.518 119.001 140.514 1 52.44 ? HAB1 Y01 1505 A 1 HETATM 41 H HAB2 Y01 . . . G 3 117.664 120.164 139.96 1 52.44 ? HAB2 Y01 1505 A 1 HETATM 42 H HAB3 Y01 . . . G 3 119.084 120.434 140.477 1 52.44 ? HAB3 Y01 1505 A 1 HETATM 43 H HAN1 Y01 . . . G 3 120.819 118.611 137.689 1 52.44 ? HAN1 Y01 1505 A 1 HETATM 44 H HAN2 Y01 . . . G 3 120.565 118.089 139.092 1 52.44 ? HAN2 Y01 1505 A 1 HETATM 45 H HAJ1 Y01 . . . G 3 121.383 120.739 139.185 1 52.44 ? HAJ1 Y01 1505 A 1 HETATM 46 H HAJ2 Y01 . . . G 3 122.416 119.885 138.47 1 52.44 ? HAJ2 Y01 1505 A 1 HETATM 47 H HAO1 Y01 . . . G 3 122.275 118.511 140.662 1 52.44 ? HAO1 Y01 1505 A 1 HETATM 48 H HAO2 Y01 . . . G 3 121.758 119.809 141.205 1 52.44 ? HAO2 Y01 1505 A 1 HETATM 49 H HBB Y01 . . . G 3 124.056 120.563 140.001 1 52.44 ? HBB Y01 1505 A 1 HETATM 50 H HAC1 Y01 . . . G 3 124.382 120.046 142.795 1 52.44 ? HAC1 Y01 1505 A 1 HETATM 51 H HAC2 Y01 . . . G 3 123.272 121.032 142.473 1 52.44 ? HAC2 Y01 1505 A 1 HETATM 52 H HAC3 Y01 . . . G 3 124.72 121.324 142.017 1 52.44 ? HAC3 Y01 1505 A 1 HETATM 53 H HBE Y01 . . . G 3 124.71 118.195 141.22 1 52.44 ? HBE Y01 1505 A 1 HETATM 54 H HAP1 Y01 . . . G 3 123.732 117.343 139.247 1 52.44 ? HAP1 Y01 1505 A 1 HETATM 55 H HAP2 Y01 . . . G 3 124.27 118.522 138.411 1 52.44 ? HAP2 Y01 1505 A 1 HETATM 56 H HAQ1 Y01 . . . G 3 126.213 117.192 138.003 1 52.44 ? HAQ1 Y01 1505 A 1 HETATM 57 H HAQ2 Y01 . . . G 3 125.635 116.126 138.762 1 52.44 ? HAQ2 Y01 1505 A 1 HETATM 58 H HBG Y01 . . . G 3 126.697 117.113 140.764 1 52.44 ? HBG Y01 1505 A 1 HETATM 59 H HBD Y01 . . . G 3 128.116 118.015 138.918 1 52.44 ? HBD Y01 1505 A 1 HETATM 60 H HAE1 Y01 . . . G 3 126.226 121.006 139.337 1 52.44 ? HAE1 Y01 1505 A 1 HETATM 61 H HAE2 Y01 . . . G 3 126.052 120.066 138.102 1 52.44 ? HAE2 Y01 1505 A 1 HETATM 62 H HAE3 Y01 . . . G 3 127.42 120.18 138.677 1 52.44 ? HAE3 Y01 1505 A 1 HETATM 63 H HAU1 Y01 . . . G 3 126.778 119.047 142.081 1 52.44 ? HAU1 Y01 1505 A 1 HETATM 64 H HAU2 Y01 . . . G 3 126.896 120.6 141.478 1 52.44 ? HAU2 Y01 1505 A 1 HETATM 65 H HAS1 Y01 . . . G 3 128.663 119.696 142.152 1 52.44 ? HAS1 Y01 1505 A 1 HETATM 66 H HAS2 Y01 . . . G 3 128.629 120.098 140.602 1 52.44 ? HAS2 Y01 1505 A 1 HETATM 67 H HBF Y01 . . . G 3 128.671 117.397 141.623 1 52.44 ? HBF Y01 1505 A 1 HETATM 68 H HAK1 Y01 . . . G 3 128.117 115.95 138.429 1 52.44 ? HAK1 Y01 1505 A 1 HETATM 69 H HAK2 Y01 . . . G 3 127.709 115.497 139.764 1 52.44 ? HAK2 Y01 1505 A 1 HETATM 70 H HAI Y01 . . . G 3 129.963 114.879 139.629 1 52.44 ? HAI Y01 1505 A 1 HETATM 71 H HAV1 Y01 . . . G 3 132.522 115.598 139.863 1 52.44 ? HAV1 Y01 1505 A 1 HETATM 72 H HAV2 Y01 . . . G 3 132.729 117.038 139.298 1 52.44 ? HAV2 Y01 1505 A 1 HETATM 73 H HBC Y01 . . . G 3 132.92 116.478 142.093 1 52.44 ? HBC Y01 1505 A 1 HETATM 74 H HAD1 Y01 . . . G 3 131.432 119.463 139.324 1 52.44 ? HAD1 Y01 1505 A 1 HETATM 75 H HAD2 Y01 . . . G 3 129.949 119.448 138.877 1 52.44 ? HAD2 Y01 1505 A 1 HETATM 76 H HAD3 Y01 . . . G 3 130.826 118.301 138.462 1 52.44 ? HAD3 Y01 1505 A 1 HETATM 77 H HAT1 Y01 . . . G 3 131.028 118.078 142.529 1 52.44 ? HAT1 Y01 1505 A 1 HETATM 78 H HAT2 Y01 . . . G 3 131.102 119.486 141.925 1 52.44 ? HAT2 Y01 1505 A 1 HETATM 79 H HAR1 Y01 . . . G 3 133.288 118.657 142.39 1 52.44 ? HAR1 Y01 1505 A 1 HETATM 80 H HAR2 Y01 . . . G 3 133.162 118.944 140.859 1 52.44 ? HAR2 Y01 1505 A 1 HETATM 81 H HAM1 Y01 . . . G 3 134.453 114.213 141.987 1 52.44 ? HAM1 Y01 1505 A 1 HETATM 82 H HAM2 Y01 . . . G 3 135.961 113.971 141.756 1 52.44 ? HAM2 Y01 1505 A 1 HETATM 83 H HAL1 Y01 . . . G 3 134.106 113.469 139.624 1 52.44 ? HAL1 Y01 1505 A 1 HETATM 84 H HAL2 Y01 . . . G 3 134.456 112.358 140.62 1 52.44 ? HAL2 Y01 1505 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 84 #