data_6TBU # _model_server_result.job_id UMNq0JUlE8PjtXyfkQLb0A _model_server_result.datetime_utc '2025-03-05 19:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1506}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . H 3 117.547 130.596 142.218 1 50.65 ? CAA Y01 1506 A 1 HETATM 2 C CBA Y01 . . . H 3 118.179 131.52 141.133 1 50.65 ? CBA Y01 1506 A 1 HETATM 3 C CAB Y01 . . . H 3 117.133 131.738 140.026 1 50.65 ? CAB Y01 1506 A 1 HETATM 4 C CAN Y01 . . . H 3 119.588 131.016 140.51 1 50.65 ? CAN Y01 1506 A 1 HETATM 5 C CAJ Y01 . . . H 3 120.323 129.741 141.115 1 50.65 ? CAJ Y01 1506 A 1 HETATM 6 C CAO Y01 . . . H 3 121.161 128.876 140.121 1 50.65 ? CAO Y01 1506 A 1 HETATM 7 C CBB Y01 . . . H 3 122.182 127.904 140.855 1 50.65 ? CBB Y01 1506 A 1 HETATM 8 C CAC Y01 . . . H 3 121.561 126.496 141.065 1 50.65 ? CAC Y01 1506 A 1 HETATM 9 C CBE Y01 . . . H 3 123.546 127.884 140.098 1 50.65 ? CBE Y01 1506 A 1 HETATM 10 C CAP Y01 . . . H 3 124.253 129.271 139.992 1 50.65 ? CAP Y01 1506 A 1 HETATM 11 C CAQ Y01 . . . H 3 125.691 129.118 139.836 1 50.65 ? CAQ Y01 1506 A 1 HETATM 12 C CBG Y01 . . . H 3 125.717 127.575 139.776 1 50.65 ? CBG Y01 1506 A 1 HETATM 13 C CBI Y01 . . . H 3 124.654 127.066 140.77 1 50.65 ? CBI Y01 1506 A 1 HETATM 14 C CAE Y01 . . . H 3 124.823 127.298 142.385 1 50.65 ? CAE Y01 1506 A 1 HETATM 15 C CAU Y01 . . . H 3 124.555 125.559 140.627 1 50.65 ? CAU Y01 1506 A 1 HETATM 16 C CAS Y01 . . . H 3 125.879 124.855 140.819 1 50.65 ? CAS Y01 1506 A 1 HETATM 17 C CBF Y01 . . . H 3 127.088 125.437 140.092 1 50.65 ? CBF Y01 1506 A 1 HETATM 18 C CBD Y01 . . . H 3 127.092 127.006 140.154 1 50.65 ? CBD Y01 1506 A 1 HETATM 19 C CAK Y01 . . . H 3 128.175 127.633 139.231 1 50.65 ? CAK Y01 1506 A 1 HETATM 20 C CAI Y01 . . . H 3 129.273 126.704 139.309 1 50.65 ? CAI Y01 1506 A 1 HETATM 21 C CAZ Y01 . . . H 3 129.544 125.801 140.268 1 50.65 ? CAZ Y01 1506 A 1 HETATM 22 C CAV Y01 . . . H 3 130.893 125.052 140.46 1 50.65 ? CAV Y01 1506 A 1 HETATM 23 C CBH Y01 . . . H 3 128.392 124.928 140.767 1 50.65 ? CBH Y01 1506 A 1 HETATM 24 C CAD Y01 . . . H 3 128.442 125.298 142.342 1 50.65 ? CAD Y01 1506 A 1 HETATM 25 C CAT Y01 . . . H 3 128.567 123.414 140.548 1 50.65 ? CAT Y01 1506 A 1 HETATM 26 C CAR Y01 . . . H 3 129.972 122.827 140.881 1 50.65 ? CAR Y01 1506 A 1 HETATM 27 C CBC Y01 . . . H 3 131.039 123.525 140.072 1 50.65 ? CBC Y01 1506 A 1 HETATM 28 O OAW Y01 . . . H 3 132.351 122.913 140.262 1 50.65 ? OAW Y01 1506 A 1 HETATM 29 C CAY Y01 . . . H 3 133.468 123.353 139.51 1 50.65 ? CAY Y01 1506 A 1 HETATM 30 O OAG Y01 . . . H 3 134.541 123.062 139.999 1 50.65 ? OAG Y01 1506 A 1 HETATM 31 C CAM Y01 . . . H 3 133.437 124.174 138.131 1 50.65 ? CAM Y01 1506 A 1 HETATM 32 C CAL Y01 . . . H 3 134.611 125.186 137.943 1 50.65 ? CAL Y01 1506 A 1 HETATM 33 C CAX Y01 . . . H 3 135.73 124.72 136.851 1 50.65 ? CAX Y01 1506 A 1 HETATM 34 O OAH Y01 . . . H 3 135.932 123.499 136.716 1 50.65 ? OAH Y01 1506 A 1 HETATM 35 O OAF Y01 . . . H 3 136.322 125.612 136.21 1 50.65 ? OAF Y01 1506 A 1 HETATM 36 H HAA1 Y01 . . . H 3 118.149 130.353 142.936 1 50.65 ? HAA1 Y01 1506 A 1 HETATM 37 H HAA2 Y01 . . . H 3 117.232 129.752 141.866 1 50.65 ? HAA2 Y01 1506 A 1 HETATM 38 H HAA3 Y01 . . . H 3 116.779 131.001 142.649 1 50.65 ? HAA3 Y01 1506 A 1 HETATM 39 H HBA Y01 . . . H 3 118.339 132.377 141.547 1 50.65 ? HBA Y01 1506 A 1 HETATM 40 H HAB1 Y01 . . . H 3 117.359 132.468 139.439 1 50.65 ? HAB1 Y01 1506 A 1 HETATM 41 H HAB2 Y01 . . . H 3 116.259 131.939 140.37 1 50.65 ? HAB2 Y01 1506 A 1 HETATM 42 H HAB3 Y01 . . . H 3 117 130.978 139.454 1 50.65 ? HAB3 Y01 1506 A 1 HETATM 43 H HAN1 Y01 . . . H 3 120.21 131.759 140.53 1 50.65 ? HAN1 Y01 1506 A 1 HETATM 44 H HAN2 Y01 . . . H 3 119.463 130.871 139.566 1 50.65 ? HAN2 Y01 1506 A 1 HETATM 45 H HAJ1 Y01 . . . H 3 119.693 129.155 141.53 1 50.65 ? HAJ1 Y01 1506 A 1 HETATM 46 H HAJ2 Y01 . . . H 3 120.898 130.032 141.839 1 50.65 ? HAJ2 Y01 1506 A 1 HETATM 47 H HAO1 Y01 . . . H 3 121.605 129.436 139.48 1 50.65 ? HAO1 Y01 1506 A 1 HETATM 48 H HAO2 Y01 . . . H 3 120.553 128.384 139.558 1 50.65 ? HAO2 Y01 1506 A 1 HETATM 49 H HBB Y01 . . . H 3 122.422 128.271 141.703 1 50.65 ? HBB Y01 1506 A 1 HETATM 50 H HAC1 Y01 . . . H 3 121.724 125.843 140.37 1 50.65 ? HAC1 Y01 1506 A 1 HETATM 51 H HAC2 Y01 . . . H 3 120.598 126.492 141.153 1 50.65 ? HAC2 Y01 1506 A 1 HETATM 52 H HAC3 Y01 . . . H 3 121.905 126.085 141.873 1 50.65 ? HAC3 Y01 1506 A 1 HETATM 53 H HBE Y01 . . . H 3 123.35 127.5 139.237 1 50.65 ? HBE Y01 1506 A 1 HETATM 54 H HAP1 Y01 . . . H 3 123.88 129.743 139.24 1 50.65 ? HAP1 Y01 1506 A 1 HETATM 55 H HAP2 Y01 . . . H 3 124.006 129.779 140.77 1 50.65 ? HAP2 Y01 1506 A 1 HETATM 56 H HAQ1 Y01 . . . H 3 126.318 129.39 140.511 1 50.65 ? HAQ1 Y01 1506 A 1 HETATM 57 H HAQ2 Y01 . . . H 3 126.147 129.538 139.099 1 50.65 ? HAQ2 Y01 1506 A 1 HETATM 58 H HBG Y01 . . . H 3 125.76 127.095 138.967 1 50.65 ? HBG Y01 1506 A 1 HETATM 59 H HBD Y01 . . . H 3 127.136 127.359 141.027 1 50.65 ? HBD Y01 1506 A 1 HETATM 60 H HAE1 Y01 . . . H 3 124.039 126.863 142.754 1 50.65 ? HAE1 Y01 1506 A 1 HETATM 61 H HAE2 Y01 . . . H 3 124.865 128.193 142.754 1 50.65 ? HAE2 Y01 1506 A 1 HETATM 62 H HAE3 Y01 . . . H 3 125.639 126.919 142.733 1 50.65 ? HAE3 Y01 1506 A 1 HETATM 63 H HAU1 Y01 . . . H 3 124.412 125.398 139.683 1 50.65 ? HAU1 Y01 1506 A 1 HETATM 64 H HAU2 Y01 . . . H 3 123.974 125.126 141.266 1 50.65 ? HAU2 Y01 1506 A 1 HETATM 65 H HAS1 Y01 . . . H 3 125.579 124.011 140.453 1 50.65 ? HAS1 Y01 1506 A 1 HETATM 66 H HAS2 Y01 . . . H 3 125.855 124.876 141.764 1 50.65 ? HAS2 Y01 1506 A 1 HETATM 67 H HBF Y01 . . . H 3 126.994 125.283 139.135 1 50.65 ? HBF Y01 1506 A 1 HETATM 68 H HAK1 Y01 . . . H 3 128.252 128.515 139.584 1 50.65 ? HAK1 Y01 1506 A 1 HETATM 69 H HAK2 Y01 . . . H 3 127.708 127.805 138.417 1 50.65 ? HAK2 Y01 1506 A 1 HETATM 70 H HAI Y01 . . . H 3 129.651 126.69 138.465 1 50.65 ? HAI Y01 1506 A 1 HETATM 71 H HAV1 Y01 . . . H 3 131.545 125.545 139.942 1 50.65 ? HAV1 Y01 1506 A 1 HETATM 72 H HAV2 Y01 . . . H 3 131.161 125.099 141.383 1 50.65 ? HAV2 Y01 1506 A 1 HETATM 73 H HBC Y01 . . . H 3 130.765 123.395 139.172 1 50.65 ? HBC Y01 1506 A 1 HETATM 74 H HAD1 Y01 . . . H 3 127.859 124.702 142.834 1 50.65 ? HAD1 Y01 1506 A 1 HETATM 75 H HAD2 Y01 . . . H 3 128.211 126.187 142.608 1 50.65 ? HAD2 Y01 1506 A 1 HETATM 76 H HAD3 Y01 . . . H 3 129.323 125.195 142.706 1 50.65 ? HAD3 Y01 1506 A 1 HETATM 77 H HAT1 Y01 . . . H 3 128.396 123.203 139.619 1 50.65 ? HAT1 Y01 1506 A 1 HETATM 78 H HAT2 Y01 . . . H 3 127.9 122.912 141.04 1 50.65 ? HAT2 Y01 1506 A 1 HETATM 79 H HAR1 Y01 . . . H 3 130.048 121.891 140.666 1 50.65 ? HAR1 Y01 1506 A 1 HETATM 80 H HAR2 Y01 . . . H 3 130.193 122.933 141.819 1 50.65 ? HAR2 Y01 1506 A 1 HETATM 81 H HAM1 Y01 . . . H 3 132.601 124.654 138.038 1 50.65 ? HAM1 Y01 1506 A 1 HETATM 82 H HAM2 Y01 . . . H 3 133.454 123.548 137.394 1 50.65 ? HAM2 Y01 1506 A 1 HETATM 83 H HAL1 Y01 . . . H 3 135.064 125.357 138.783 1 50.65 ? HAL1 Y01 1506 A 1 HETATM 84 H HAL2 Y01 . . . H 3 134.268 126.051 137.672 1 50.65 ? HAL2 Y01 1506 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 84 #