data_6TBU # _model_server_result.job_id iKqHMhOj12juf7AaluWl6w _model_server_result.datetime_utc '2025-03-05 19:01:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1507}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 3 123.351 138.805 142.244 1 52.22 ? CAA Y01 1507 A 1 HETATM 2 C CBA Y01 . . . I 3 123.137 138.409 140.757 1 52.22 ? CBA Y01 1507 A 1 HETATM 3 C CAB Y01 . . . I 3 121.746 138.889 140.312 1 52.22 ? CAB Y01 1507 A 1 HETATM 4 C CAN Y01 . . . I 3 123.334 136.859 140.476 1 52.22 ? CAN Y01 1507 A 1 HETATM 5 C CAJ Y01 . . . I 3 123.069 135.875 141.668 1 52.22 ? CAJ Y01 1507 A 1 HETATM 6 C CAO Y01 . . . I 3 123.183 134.352 141.351 1 52.22 ? CAO Y01 1507 A 1 HETATM 7 C CBB Y01 . . . I 3 123.904 133.5 142.461 1 52.22 ? CBB Y01 1507 A 1 HETATM 8 C CAC Y01 . . . I 3 123.123 132.195 142.792 1 52.22 ? CAC Y01 1507 A 1 HETATM 9 C CBE Y01 . . . I 3 125.365 133.276 141.984 1 52.22 ? CBE Y01 1507 A 1 HETATM 10 C CAP Y01 . . . I 3 126.167 134.584 141.685 1 52.22 ? CAP Y01 1507 A 1 HETATM 11 C CAQ Y01 . . . I 3 127.615 134.356 141.862 1 52.22 ? CAQ Y01 1507 A 1 HETATM 12 C CBG Y01 . . . I 3 127.507 132.836 142.064 1 52.22 ? CBG Y01 1507 A 1 HETATM 13 C CBI Y01 . . . I 3 126.3 132.627 142.995 1 52.22 ? CBI Y01 1507 A 1 HETATM 14 C CAE Y01 . . . I 3 126.298 133.283 144.496 1 52.22 ? CAE Y01 1507 A 1 HETATM 15 C CAU Y01 . . . I 3 126.077 131.151 143.219 1 52.22 ? CAU Y01 1507 A 1 HETATM 16 C CAS Y01 . . . I 3 127.309 130.432 143.692 1 52.22 ? CAS Y01 1507 A 1 HETATM 17 C CBF Y01 . . . I 3 128.571 130.673 142.889 1 52.22 ? CBF Y01 1507 A 1 HETATM 18 C CBD Y01 . . . I 3 128.765 132.217 142.705 1 52.22 ? CBD Y01 1507 A 1 HETATM 19 C CAK Y01 . . . I 3 129.999 132.584 141.842 1 52.22 ? CAK Y01 1507 A 1 HETATM 20 C CAI Y01 . . . I 3 130.998 131.553 142.102 1 52.22 ? CAI Y01 1507 A 1 HETATM 21 C CAZ Y01 . . . I 3 131.019 130.537 142.998 1 52.22 ? CAZ Y01 1507 A 1 HETATM 22 C CAV Y01 . . . I 3 132.178 129.562 143.385 1 52.22 ? CAV Y01 1507 A 1 HETATM 23 C CBH Y01 . . . I 3 129.747 130.086 143.674 1 52.22 ? CBH Y01 1507 A 1 HETATM 24 C CAD Y01 . . . I 3 129.972 130.819 145.079 1 52.22 ? CAD Y01 1507 A 1 HETATM 25 C CAT Y01 . . . I 3 129.573 128.548 143.814 1 52.22 ? CAT Y01 1507 A 1 HETATM 26 C CAR Y01 . . . I 3 130.811 127.708 144.21 1 52.22 ? CAR Y01 1507 A 1 HETATM 27 C CBC Y01 . . . I 3 131.984 127.982 143.304 1 52.22 ? CBC Y01 1507 A 1 HETATM 28 O OAW Y01 . . . I 3 133.101 127.127 143.7 1 52.22 ? OAW Y01 1507 A 1 HETATM 29 C CAY Y01 . . . I 3 134.246 126.936 142.893 1 52.22 ? CAY Y01 1507 A 1 HETATM 30 O OAG Y01 . . . I 3 135.249 126.668 143.522 1 52.22 ? OAG Y01 1507 A 1 HETATM 31 C CAM Y01 . . . I 3 134.342 127.04 141.302 1 52.22 ? CAM Y01 1507 A 1 HETATM 32 C CAL Y01 . . . I 3 134.453 128.507 140.756 1 52.22 ? CAL Y01 1507 A 1 HETATM 33 C CAX Y01 . . . I 3 135.408 128.682 139.441 1 52.22 ? CAX Y01 1507 A 1 HETATM 34 O OAH Y01 . . . I 3 136.318 127.85 139.265 1 52.22 ? OAH Y01 1507 A 1 HETATM 35 O OAF Y01 . . . I 3 135.175 129.645 138.685 1 52.22 ? OAF Y01 1507 A 1 HETATM 36 H HAA1 Y01 . . . I 3 124.163 138.452 142.638 1 52.22 ? HAA1 Y01 1507 A 1 HETATM 37 H HAA2 Y01 . . . I 3 122.641 138.502 142.828 1 52.22 ? HAA2 Y01 1507 A 1 HETATM 38 H HAA3 Y01 . . . I 3 123.399 139.765 142.369 1 52.22 ? HAA3 Y01 1507 A 1 HETATM 39 H HBA Y01 . . . I 3 123.789 138.883 140.235 1 52.22 ? HBA Y01 1507 A 1 HETATM 40 H HAB1 Y01 . . . I 3 121.756 139.306 139.438 1 52.22 ? HAB1 Y01 1507 A 1 HETATM 41 H HAB2 Y01 . . . I 3 121.361 139.537 140.913 1 52.22 ? HAB2 Y01 1507 A 1 HETATM 42 H HAB3 Y01 . . . I 3 121.088 138.186 140.254 1 52.22 ? HAB3 Y01 1507 A 1 HETATM 43 H HAN1 Y01 . . . I 3 124.224 136.709 140.139 1 52.22 ? HAN1 Y01 1507 A 1 HETATM 44 H HAN2 Y01 . . . I 3 122.769 136.606 139.738 1 52.22 ? HAN2 Y01 1507 A 1 HETATM 45 H HAJ1 Y01 . . . I 3 122.186 136.042 142.022 1 52.22 ? HAJ1 Y01 1507 A 1 HETATM 46 H HAJ2 Y01 . . . I 3 123.663 136.09 142.389 1 52.22 ? HAJ2 Y01 1507 A 1 HETATM 47 H HAO1 Y01 . . . I 3 123.632 134.226 140.511 1 52.22 ? HAO1 Y01 1507 A 1 HETATM 48 H HAO2 Y01 . . . I 3 122.302 134.013 141.155 1 52.22 ? HAO2 Y01 1507 A 1 HETATM 49 H HBB Y01 . . . I 3 124.017 134.011 143.259 1 52.22 ? HBB Y01 1507 A 1 HETATM 50 H HAC1 Y01 . . . I 3 123.359 131.41 142.285 1 52.22 ? HAC1 Y01 1507 A 1 HETATM 51 H HAC2 Y01 . . . I 3 122.163 132.254 142.672 1 52.22 ? HAC2 Y01 1507 A 1 HETATM 52 H HAC3 Y01 . . . I 3 123.26 131.938 143.717 1 52.22 ? HAC3 Y01 1507 A 1 HETATM 53 H HBE Y01 . . . I 3 125.289 132.702 141.215 1 52.22 ? HBE Y01 1507 A 1 HETATM 54 H HAP1 Y01 . . . I 3 125.971 134.862 140.782 1 52.22 ? HAP1 Y01 1507 A 1 HETATM 55 H HAP2 Y01 . . . I 3 125.82 135.275 142.26 1 52.22 ? HAP2 Y01 1507 A 1 HETATM 56 H HAQ1 Y01 . . . I 3 128.123 134.706 142.606 1 52.22 ? HAQ1 Y01 1507 A 1 HETATM 57 H HAQ2 Y01 . . . I 3 128.236 134.619 141.167 1 52.22 ? HAQ2 Y01 1507 A 1 HETATM 58 H HBG Y01 . . . I 3 127.569 132.227 141.356 1 52.22 ? HBG Y01 1507 A 1 HETATM 59 H HBD Y01 . . . I 3 128.744 132.712 143.515 1 52.22 ? HBD Y01 1507 A 1 HETATM 60 H HAE1 Y01 . . . I 3 125.442 133.012 144.856 1 52.22 ? HAE1 Y01 1507 A 1 HETATM 61 H HAE2 Y01 . . . I 3 126.381 134.242 144.615 1 52.22 ? HAE2 Y01 1507 A 1 HETATM 62 H HAE3 Y01 . . . I 3 127.031 132.969 145.038 1 52.22 ? HAE3 Y01 1507 A 1 HETATM 63 H HAU1 Y01 . . . I 3 126 130.777 142.333 1 52.22 ? HAU1 Y01 1507 A 1 HETATM 64 H HAU2 Y01 . . . I 3 125.406 130.933 143.882 1 52.22 ? HAU2 Y01 1507 A 1 HETATM 65 H HAS1 Y01 . . . I 3 126.937 129.543 143.587 1 52.22 ? HAS1 Y01 1507 A 1 HETATM 66 H HAS2 Y01 . . . I 3 127.279 130.753 144.588 1 52.22 ? HAS2 Y01 1507 A 1 HETATM 67 H HBF Y01 . . . I 3 128.472 130.367 141.98 1 52.22 ? HBF Y01 1507 A 1 HETATM 68 H HAK1 Y01 . . . I 3 130.139 133.497 142.107 1 52.22 ? HAK1 Y01 1507 A 1 HETATM 69 H HAK2 Y01 . . . I 3 129.63 132.713 140.975 1 52.22 ? HAK2 Y01 1507 A 1 HETATM 70 H HAI Y01 . . . I 3 131.747 131.827 141.625 1 52.22 ? HAI Y01 1507 A 1 HETATM 71 H HAV1 Y01 . . . I 3 132.929 129.793 142.82 1 52.22 ? HAV1 Y01 1507 A 1 HETATM 72 H HAV2 Y01 . . . I 3 132.437 129.728 144.303 1 52.22 ? HAV2 Y01 1507 A 1 HETATM 73 H HBC Y01 . . . I 3 131.677 127.728 142.423 1 52.22 ? HBC Y01 1507 A 1 HETATM 74 H HAD1 Y01 . . . I 3 130.048 130.156 145.783 1 52.22 ? HAD1 Y01 1507 A 1 HETATM 75 H HAD2 Y01 . . . I 3 129.312 131.46 145.371 1 52.22 ? HAD2 Y01 1507 A 1 HETATM 76 H HAD3 Y01 . . . I 3 130.786 131.345 145.065 1 52.22 ? HAD3 Y01 1507 A 1 HETATM 77 H HAT1 Y01 . . . I 3 129.267 128.195 142.971 1 52.22 ? HAT1 Y01 1507 A 1 HETATM 78 H HAT2 Y01 . . . I 3 128.868 128.33 144.441 1 52.22 ? HAT2 Y01 1507 A 1 HETATM 79 H HAR1 Y01 . . . I 3 130.645 126.755 144.152 1 52.22 ? HAR1 Y01 1507 A 1 HETATM 80 H HAR2 Y01 . . . I 3 131.092 127.897 145.118 1 52.22 ? HAR2 Y01 1507 A 1 HETATM 81 H HAM1 Y01 . . . I 3 133.58 126.609 140.889 1 52.22 ? HAM1 Y01 1507 A 1 HETATM 82 H HAM2 Y01 . . . I 3 135.114 126.539 141.004 1 52.22 ? HAM2 Y01 1507 A 1 HETATM 83 H HAL1 Y01 . . . I 3 134.776 129.11 141.439 1 52.22 ? HAL1 Y01 1507 A 1 HETATM 84 H HAL2 Y01 . . . I 3 133.576 128.847 140.533 1 52.22 ? HAL2 Y01 1507 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 601 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 84 #