data_6TBU # _model_server_result.job_id Ec37z3oRYWX5-Gc0hYd5hA _model_server_result.datetime_utc '2025-03-05 19:28:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1508}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 3 117.993 148.995 142.975 1 55.74 ? CAA Y01 1508 A 1 HETATM 2 C CBA Y01 . . . J 3 117.818 147.859 141.924 1 55.74 ? CBA Y01 1508 A 1 HETATM 3 C CAB Y01 . . . J 3 117.225 146.601 142.619 1 55.74 ? CAB Y01 1508 A 1 HETATM 4 C CAN Y01 . . . J 3 119.169 147.533 141.16 1 55.74 ? CAN Y01 1508 A 1 HETATM 5 C CAJ Y01 . . . J 3 120.384 147.089 142.058 1 55.74 ? CAJ Y01 1508 A 1 HETATM 6 C CAO Y01 . . . J 3 121.702 146.702 141.315 1 55.74 ? CAO Y01 1508 A 1 HETATM 7 C CBB Y01 . . . J 3 122.812 146.075 142.243 1 55.74 ? CBB Y01 1508 A 1 HETATM 8 C CAC Y01 . . . J 3 122.425 144.625 142.658 1 55.74 ? CAC Y01 1508 A 1 HETATM 9 C CBE Y01 . . . J 3 124.187 146.225 141.517 1 55.74 ? CBE Y01 1508 A 1 HETATM 10 C CAP Y01 . . . J 3 124.725 147.719 141.392 1 55.74 ? CAP Y01 1508 A 1 HETATM 11 C CAQ Y01 . . . J 3 126.196 147.752 141.501 1 55.74 ? CAQ Y01 1508 A 1 HETATM 12 C CBG Y01 . . . J 3 126.373 146.237 141.26 1 55.74 ? CBG Y01 1508 A 1 HETATM 13 C CBI Y01 . . . J 3 125.373 145.564 142.215 1 55.74 ? CBI Y01 1508 A 1 HETATM 14 C CAE Y01 . . . J 3 125.468 145.852 143.822 1 55.74 ? CAE Y01 1508 A 1 HETATM 15 C CAU Y01 . . . J 3 125.476 144.057 142.06 1 55.74 ? CAU Y01 1508 A 1 HETATM 16 C CAS Y01 . . . J 3 126.871 143.543 142.239 1 55.74 ? CAS Y01 1508 A 1 HETATM 17 C CBF Y01 . . . J 3 127.913 144.19 141.373 1 55.74 ? CBF Y01 1508 A 1 HETATM 18 C CBD Y01 . . . J 3 127.801 145.746 141.558 1 55.74 ? CBD Y01 1508 A 1 HETATM 19 C CAK Y01 . . . J 3 128.797 146.547 140.668 1 55.74 ? CAK Y01 1508 A 1 HETATM 20 C CAI Y01 . . . J 3 129.939 145.657 140.454 1 55.74 ? CAI Y01 1508 A 1 HETATM 21 C CAZ Y01 . . . J 3 130.336 144.556 141.137 1 55.74 ? CAZ Y01 1508 A 1 HETATM 22 C CAV Y01 . . . J 3 131.741 143.825 141.151 1 55.74 ? CAV Y01 1508 A 1 HETATM 23 C CBH Y01 . . . J 3 129.303 143.706 141.838 1 55.74 ? CBH Y01 1508 A 1 HETATM 24 C CAD Y01 . . . J 3 129.631 144.147 143.355 1 55.74 ? CAD Y01 1508 A 1 HETATM 25 C CAT Y01 . . . J 3 129.466 142.193 141.616 1 55.74 ? CAT Y01 1508 A 1 HETATM 26 C CAR Y01 . . . J 3 130.87 141.614 141.886 1 55.74 ? CAR Y01 1508 A 1 HETATM 27 C CBC Y01 . . . J 3 131.913 142.232 140.991 1 55.74 ? CBC Y01 1508 A 1 HETATM 28 O OAW Y01 . . . J 3 133.207 141.657 141.335 1 55.74 ? OAW Y01 1508 A 1 HETATM 29 C CAY Y01 . . . J 3 133.833 140.682 140.535 1 55.74 ? CAY Y01 1508 A 1 HETATM 30 O OAG Y01 . . . J 3 135.047 140.749 140.533 1 55.74 ? OAG Y01 1508 A 1 HETATM 31 C CAM Y01 . . . J 3 133.117 139.552 139.67 1 55.74 ? CAM Y01 1508 A 1 HETATM 32 C CAL Y01 . . . J 3 133.59 139.482 138.179 1 55.74 ? CAL Y01 1508 A 1 HETATM 33 C CAX Y01 . . . J 3 134.392 138.117 137.769 1 55.74 ? CAX Y01 1508 A 1 HETATM 34 O OAH Y01 . . . J 3 134.926 137.455 138.679 1 55.74 ? OAH Y01 1508 A 1 HETATM 35 O OAF Y01 . . . J 3 134.427 137.817 136.561 1 55.74 ? OAF Y01 1508 A 1 HETATM 36 H HAA1 Y01 . . . J 3 118.567 149.721 142.685 1 55.74 ? HAA1 Y01 1508 A 1 HETATM 37 H HAA2 Y01 . . . J 3 118.379 148.692 143.812 1 55.74 ? HAA2 Y01 1508 A 1 HETATM 38 H HAA3 Y01 . . . J 3 117.15 149.412 143.213 1 55.74 ? HAA3 Y01 1508 A 1 HETATM 39 H HBA Y01 . . . J 3 117.175 148.165 141.266 1 55.74 ? HBA Y01 1508 A 1 HETATM 40 H HAB1 Y01 . . . J 3 116.971 145.911 141.988 1 55.74 ? HAB1 Y01 1508 A 1 HETATM 41 H HAB2 Y01 . . . J 3 116.428 146.792 143.138 1 55.74 ? HAB2 Y01 1508 A 1 HETATM 42 H HAB3 Y01 . . . J 3 117.827 146.168 143.244 1 55.74 ? HAB3 Y01 1508 A 1 HETATM 43 H HAN1 Y01 . . . J 3 119.429 148.301 140.631 1 55.74 ? HAN1 Y01 1508 A 1 HETATM 44 H HAN2 Y01 . . . J 3 118.998 146.846 140.5 1 55.74 ? HAN2 Y01 1508 A 1 HETATM 45 H HAJ1 Y01 . . . J 3 120.114 146.34 142.604 1 55.74 ? HAJ1 Y01 1508 A 1 HETATM 46 H HAJ2 Y01 . . . J 3 120.578 147.793 142.693 1 55.74 ? HAJ2 Y01 1508 A 1 HETATM 47 H HAO1 Y01 . . . J 3 122.052 147.466 140.847 1 55.74 ? HAO1 Y01 1508 A 1 HETATM 48 H HAO2 Y01 . . . J 3 121.48 146.111 140.586 1 55.74 ? HAO2 Y01 1508 A 1 HETATM 49 H HBB Y01 . . . J 3 122.94 146.61 143.034 1 55.74 ? HBB Y01 1508 A 1 HETATM 50 H HAC1 Y01 . . . J 3 122.703 143.919 142.067 1 55.74 ? HAC1 Y01 1508 A 1 HETATM 51 H HAC2 Y01 . . . J 3 121.476 144.473 142.746 1 55.74 ? HAC2 Y01 1508 A 1 HETATM 52 H HAC3 Y01 . . . J 3 122.807 144.393 143.514 1 55.74 ? HAC3 Y01 1508 A 1 HETATM 53 H HBE Y01 . . . J 3 124.058 145.803 140.657 1 55.74 ? HBE Y01 1508 A 1 HETATM 54 H HAP1 Y01 . . . J 3 124.439 148.077 140.539 1 55.74 ? HAP1 Y01 1508 A 1 HETATM 55 H HAP2 Y01 . . . J 3 124.279 148.254 142.064 1 55.74 ? HAP2 Y01 1508 A 1 HETATM 56 H HAQ1 Y01 . . . J 3 126.664 147.973 142.32 1 55.74 ? HAQ1 Y01 1508 A 1 HETATM 57 H HAQ2 Y01 . . . J 3 126.712 148.323 140.916 1 55.74 ? HAQ2 Y01 1508 A 1 HETATM 58 H HBG Y01 . . . J 3 126.423 145.846 140.399 1 55.74 ? HBG Y01 1508 A 1 HETATM 59 H HBD Y01 . . . J 3 127.829 146.027 142.469 1 55.74 ? HBD Y01 1508 A 1 HETATM 60 H HAE1 Y01 . . . J 3 124.803 145.265 144.198 1 55.74 ? HAE1 Y01 1508 A 1 HETATM 61 H HAE2 Y01 . . . J 3 125.314 146.741 144.175 1 55.74 ? HAE2 Y01 1508 A 1 HETATM 62 H HAE3 Y01 . . . J 3 126.346 145.666 144.177 1 55.74 ? HAE3 Y01 1508 A 1 HETATM 63 H HAU1 Y01 . . . J 3 125.36 143.893 141.114 1 55.74 ? HAU1 Y01 1508 A 1 HETATM 64 H HAU2 Y01 . . . J 3 124.96 143.54 142.692 1 55.74 ? HAU2 Y01 1508 A 1 HETATM 65 H HAS1 Y01 . . . J 3 126.665 142.631 141.996 1 55.74 ? HAS1 Y01 1508 A 1 HETATM 66 H HAS2 Y01 . . . J 3 126.92 143.686 143.17 1 55.74 ? HAS2 Y01 1508 A 1 HETATM 67 H HBF Y01 . . . J 3 127.7 144.076 140.44 1 55.74 ? HBF Y01 1508 A 1 HETATM 68 H HAK1 Y01 . . . J 3 128.869 147.367 141.177 1 55.74 ? HAK1 Y01 1508 A 1 HETATM 69 H HAK2 Y01 . . . J 3 128.263 146.853 139.938 1 55.74 ? HAK2 Y01 1508 A 1 HETATM 70 H HAI Y01 . . . J 3 130.407 146.022 139.74 1 55.74 ? HAI Y01 1508 A 1 HETATM 71 H HAV1 Y01 . . . J 3 132.261 144.24 140.447 1 55.74 ? HAV1 Y01 1508 A 1 HETATM 72 H HAV2 Y01 . . . J 3 132.182 144.026 141.987 1 55.74 ? HAV2 Y01 1508 A 1 HETATM 73 H HBC Y01 . . . J 3 131.662 141.955 140.101 1 55.74 ? HBC Y01 1508 A 1 HETATM 74 H HAD1 Y01 . . . J 3 129.029 143.718 143.972 1 55.74 ? HAD1 Y01 1508 A 1 HETATM 75 H HAD2 Y01 . . . J 3 129.629 145.09 143.561 1 55.74 ? HAD2 Y01 1508 A 1 HETATM 76 H HAD3 Y01 . . . J 3 130.525 143.885 143.606 1 55.74 ? HAD3 Y01 1508 A 1 HETATM 77 H HAT1 Y01 . . . J 3 129.255 141.983 140.697 1 55.74 ? HAT1 Y01 1508 A 1 HETATM 78 H HAT2 Y01 . . . J 3 128.835 141.683 142.139 1 55.74 ? HAT2 Y01 1508 A 1 HETATM 79 H HAR1 Y01 . . . J 3 130.916 140.661 141.725 1 55.74 ? HAR1 Y01 1508 A 1 HETATM 80 H HAR2 Y01 . . . J 3 131.147 141.762 142.8 1 55.74 ? HAR2 Y01 1508 A 1 HETATM 81 H HAM1 Y01 . . . J 3 132.159 139.677 139.687 1 55.74 ? HAM1 Y01 1508 A 1 HETATM 82 H HAM2 Y01 . . . J 3 133.274 138.692 140.086 1 55.74 ? HAM2 Y01 1508 A 1 HETATM 83 H HAL1 Y01 . . . J 3 134.155 140.235 137.959 1 55.74 ? HAL1 Y01 1508 A 1 HETATM 84 H HAL2 Y01 . . . J 3 132.834 139.572 137.584 1 55.74 ? HAL2 Y01 1508 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 84 #