data_6TBU # _model_server_result.job_id '_fPKvDrrobV4o36VjfBYDw' _model_server_result.datetime_utc '2025-03-05 18:41:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1510}' # _entry.id 6TBU # _exptl.entry_id 6TBU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TBU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 2000 NAG 2 n B NAG 2 B 2 NAG A 2001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 279 A CYS 279 1_555 A SG CYS 323 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 295 A CYS 295 1_555 A SG CYS 304 A CYS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 781 A CYS 781 1_555 A SG CYS 801 A CYS 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 814 A CYS 814 1_555 A SG CYS 829 A CYS 829 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 828 A CYS 828 1_555 A SG CYS 843 A CYS 843 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CG PRO 45 A PRO 45 1_555 C CAK Y01 . A Y01 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 319 A ASN 319 1_555 L C1 NAG . A NAG 1510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale3 A ND2 ASN 767 A ASN 767 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6TBU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Y01 A 1 1501 1501 Y01 Y01 . D 3 Y01 A 1 1502 1502 Y01 Y01 . E 3 Y01 A 1 1503 1503 Y01 Y01 . F 3 Y01 A 1 1504 1504 Y01 Y01 . G 3 Y01 A 1 1505 1505 Y01 Y01 . H 3 Y01 A 1 1506 1506 Y01 Y01 . I 3 Y01 A 1 1507 1507 Y01 Y01 . J 3 Y01 A 1 1508 1508 Y01 Y01 . K 3 Y01 A 1 1509 1509 Y01 Y01 . L 4 NAG A 1 1510 1999 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 4 186.459 119.614 139.968 1 91.32 ? C1 NAG 1510 A 1 HETATM 2 C C2 NAG . . . L 4 185.762 120.627 139.064 1 91.32 ? C2 NAG 1510 A 1 HETATM 3 C C3 NAG . . . L 4 186.772 121.643 138.543 1 91.32 ? C3 NAG 1510 A 1 HETATM 4 C C4 NAG . . . L 4 187.511 122.288 139.707 1 91.32 ? C4 NAG 1510 A 1 HETATM 5 C C5 NAG . . . L 4 188.137 121.219 140.599 1 91.32 ? C5 NAG 1510 A 1 HETATM 6 C C6 NAG . . . L 4 188.763 121.792 141.85 1 91.32 ? C6 NAG 1510 A 1 HETATM 7 C C7 NAG . . . L 4 183.939 120.404 137.427 1 91.32 ? C7 NAG 1510 A 1 HETATM 8 C C8 NAG . . . L 4 183.379 119.584 136.303 1 91.32 ? C8 NAG 1510 A 1 HETATM 9 N N2 NAG . . . L 4 185.082 119.961 137.963 1 91.32 ? N2 NAG 1510 A 1 HETATM 10 O O3 NAG . . . L 4 186.098 122.644 137.791 1 91.32 ? O3 NAG 1510 A 1 HETATM 11 O O4 NAG . . . L 4 188.525 123.164 139.227 1 91.32 ? O4 NAG 1510 A 1 HETATM 12 O O5 NAG . . . L 4 187.125 120.299 141.034 1 91.32 ? O5 NAG 1510 A 1 HETATM 13 O O6 NAG . . . L 4 187.838 122.597 142.568 1 91.32 ? O6 NAG 1510 A 1 HETATM 14 O O7 NAG . . . L 4 183.383 121.422 137.827 1 91.32 ? O7 NAG 1510 A 1 HETATM 15 H H2 NAG . . . L 4 185.102 121.104 139.603 1 91.32 ? H2 NAG 1510 A 1 HETATM 16 H H3 NAG . . . L 4 187.413 121.19 137.964 1 91.32 ? H3 NAG 1510 A 1 HETATM 17 H H4 NAG . . . L 4 186.872 122.802 140.235 1 91.32 ? H4 NAG 1510 A 1 HETATM 18 H H5 NAG . . . L 4 188.815 120.729 140.095 1 91.32 ? H5 NAG 1510 A 1 HETATM 19 H H61 NAG . . . L 4 189.535 122.336 141.602 1 91.32 ? H61 NAG 1510 A 1 HETATM 20 H H62 NAG . . . L 4 189.055 121.059 142.422 1 91.32 ? H62 NAG 1510 A 1 HETATM 21 H H81 NAG . . . L 4 182.454 119.849 136.144 1 91.32 ? H81 NAG 1510 A 1 HETATM 22 H H82 NAG . . . L 4 183.407 118.638 136.54 1 91.32 ? H82 NAG 1510 A 1 HETATM 23 H H83 NAG . . . L 4 183.903 119.743 135.495 1 91.32 ? H83 NAG 1510 A 1 HETATM 24 H HN2 NAG . . . L 4 185.448 119.197 137.625 1 91.32 ? HN2 NAG 1510 A 1 HETATM 25 H HO3 NAG . . . L 4 186.649 123.325 137.648 1 91.32 ? HO3 NAG 1510 A 1 HETATM 26 H HO4 NAG . . . L 4 188.386 123.977 139.556 1 91.32 ? HO4 NAG 1510 A 1 HETATM 27 H HO6 NAG . . . L 4 188.174 123.411 142.677 1 91.32 ? HO6 NAG 1510 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 27 #