data_6TBY
#
_model_server_result.job_id            FBcDw36qAn4MYPqRTFmqbQ 
_model_server_result.datetime_utc      '2025-01-20 17:50:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    6TBY 
#
_exptl.entry_id    6TBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6TBY 
_cell.length_a            134.738 
_cell.length_b            134.738 
_cell.length_c            46.543 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 262 AAA CYS 360 1_555 D S2 BME . AAA BME 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale2 A SG CYS 274 AAA CYS 372 1_555 B CAC CYC . AAA CYC 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.685 ? 
covale ? covale3 A SG CYS 327 AAA CYS 425 1_555 E S2 BME . AAA BME 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 224 n n 
C1 C2 GOL sing 225 n n 
C1 H11 GOL sing 226 n n 
C1 H12 GOL sing 227 n n 
O1 HO1 GOL sing 228 n n 
C2 O2 GOL sing 229 n n 
C2 C3 GOL sing 230 n n 
C2 H2 GOL sing 231 n n 
O2 HO2 GOL sing 232 n n 
C3 O3 GOL sing 233 n n 
C3 H31 GOL sing 234 n n 
C3 H32 GOL sing 235 n n 
O3 HO3 GOL sing 236 n n 
#
_atom_sites.entry_id                     6TBY 
_atom_sites.fract_transf_matrix[1][1]    0.007422 
_atom_sites.fract_transf_matrix[1][2]    0.004285 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00857 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021486 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CYC AAA 1 500 500 CYC CYC . 
C 3 GOL AAA 1 501 501 GOL GOL . 
D 4 BME AAA 1 502 502 BME BME . 
E 4 BME AAA 1 503 503 BME BME . 
F 5 PEG AAA 1 504 504 PEG PEG . 
G 5 PEG AAA 1 505 505 PEG PEG . 
H 6 HOH AAA 1 601 143 HOH HOH . 
H 6 HOH AAA 2 602 117 HOH HOH . 
H 6 HOH AAA 3 603 111 HOH HOH . 
H 6 HOH AAA 4 604 97 HOH HOH . 
H 6 HOH AAA 5 605 107 HOH HOH . 
H 6 HOH AAA 6 606 60 HOH HOH . 
H 6 HOH AAA 7 607 144 HOH HOH . 
H 6 HOH AAA 8 608 141 HOH HOH . 
H 6 HOH AAA 9 609 20 HOH HOH . 
H 6 HOH AAA 10 610 134 HOH HOH . 
H 6 HOH AAA 11 611 136 HOH HOH . 
H 6 HOH AAA 12 612 102 HOH HOH . 
H 6 HOH AAA 13 613 120 HOH HOH . 
H 6 HOH AAA 14 614 44 HOH HOH . 
H 6 HOH AAA 15 615 98 HOH HOH . 
H 6 HOH AAA 16 616 52 HOH HOH . 
H 6 HOH AAA 17 617 13 HOH HOH . 
H 6 HOH AAA 18 618 133 HOH HOH . 
H 6 HOH AAA 19 619 2 HOH HOH . 
H 6 HOH AAA 20 620 8 HOH HOH . 
H 6 HOH AAA 21 621 65 HOH HOH . 
H 6 HOH AAA 22 622 41 HOH HOH . 
H 6 HOH AAA 23 623 116 HOH HOH . 
H 6 HOH AAA 24 624 53 HOH HOH . 
H 6 HOH AAA 25 625 68 HOH HOH . 
H 6 HOH AAA 26 626 26 HOH HOH . 
H 6 HOH AAA 27 627 6 HOH HOH . 
H 6 HOH AAA 28 628 103 HOH HOH . 
H 6 HOH AAA 29 629 101 HOH HOH . 
H 6 HOH AAA 30 630 29 HOH HOH . 
H 6 HOH AAA 31 631 122 HOH HOH . 
H 6 HOH AAA 32 632 45 HOH HOH . 
H 6 HOH AAA 33 633 24 HOH HOH . 
H 6 HOH AAA 34 634 31 HOH HOH . 
H 6 HOH AAA 35 635 15 HOH HOH . 
H 6 HOH AAA 36 636 140 HOH HOH . 
H 6 HOH AAA 37 637 11 HOH HOH . 
H 6 HOH AAA 38 638 106 HOH HOH . 
H 6 HOH AAA 39 639 99 HOH HOH . 
H 6 HOH AAA 40 640 16 HOH HOH . 
H 6 HOH AAA 41 641 64 HOH HOH . 
H 6 HOH AAA 42 642 49 HOH HOH . 
H 6 HOH AAA 43 643 131 HOH HOH . 
H 6 HOH AAA 44 644 114 HOH HOH . 
H 6 HOH AAA 45 645 43 HOH HOH . 
H 6 HOH AAA 46 646 35 HOH HOH . 
H 6 HOH AAA 47 647 38 HOH HOH . 
H 6 HOH AAA 48 648 42 HOH HOH . 
H 6 HOH AAA 49 649 74 HOH HOH . 
H 6 HOH AAA 50 650 23 HOH HOH . 
H 6 HOH AAA 51 651 34 HOH HOH . 
H 6 HOH AAA 52 652 9 HOH HOH . 
H 6 HOH AAA 53 653 18 HOH HOH . 
H 6 HOH AAA 54 654 39 HOH HOH . 
H 6 HOH AAA 55 655 17 HOH HOH . 
H 6 HOH AAA 56 656 32 HOH HOH . 
H 6 HOH AAA 57 657 75 HOH HOH . 
H 6 HOH AAA 58 658 76 HOH HOH . 
H 6 HOH AAA 59 659 87 HOH HOH . 
H 6 HOH AAA 60 660 139 HOH HOH . 
H 6 HOH AAA 61 661 67 HOH HOH . 
H 6 HOH AAA 62 662 50 HOH HOH . 
H 6 HOH AAA 63 663 7 HOH HOH . 
H 6 HOH AAA 64 664 118 HOH HOH . 
H 6 HOH AAA 65 665 62 HOH HOH . 
H 6 HOH AAA 66 666 121 HOH HOH . 
H 6 HOH AAA 67 667 100 HOH HOH . 
H 6 HOH AAA 68 668 25 HOH HOH . 
H 6 HOH AAA 69 669 19 HOH HOH . 
H 6 HOH AAA 70 670 78 HOH HOH . 
H 6 HOH AAA 71 671 48 HOH HOH . 
H 6 HOH AAA 72 672 145 HOH HOH . 
H 6 HOH AAA 73 673 129 HOH HOH . 
H 6 HOH AAA 74 674 119 HOH HOH . 
H 6 HOH AAA 75 675 127 HOH HOH . 
H 6 HOH AAA 76 676 10 HOH HOH . 
H 6 HOH AAA 77 677 70 HOH HOH . 
H 6 HOH AAA 78 678 12 HOH HOH . 
H 6 HOH AAA 79 679 37 HOH HOH . 
H 6 HOH AAA 80 680 79 HOH HOH . 
H 6 HOH AAA 81 681 1 HOH HOH . 
H 6 HOH AAA 82 682 30 HOH HOH . 
H 6 HOH AAA 83 683 36 HOH HOH . 
H 6 HOH AAA 84 684 66 HOH HOH . 
H 6 HOH AAA 85 685 40 HOH HOH . 
H 6 HOH AAA 86 686 55 HOH HOH . 
H 6 HOH AAA 87 687 83 HOH HOH . 
H 6 HOH AAA 88 688 63 HOH HOH . 
H 6 HOH AAA 89 689 47 HOH HOH . 
H 6 HOH AAA 90 690 27 HOH HOH . 
H 6 HOH AAA 91 691 57 HOH HOH . 
H 6 HOH AAA 92 692 58 HOH HOH . 
H 6 HOH AAA 93 693 112 HOH HOH . 
H 6 HOH AAA 94 694 104 HOH HOH . 
H 6 HOH AAA 95 695 46 HOH HOH . 
H 6 HOH AAA 96 696 21 HOH HOH . 
H 6 HOH AAA 97 697 54 HOH HOH . 
H 6 HOH AAA 98 698 84 HOH HOH . 
H 6 HOH AAA 99 699 28 HOH HOH . 
H 6 HOH AAA 100 700 59 HOH HOH . 
H 6 HOH AAA 101 701 71 HOH HOH . 
H 6 HOH AAA 102 702 115 HOH HOH . 
H 6 HOH AAA 103 703 4 HOH HOH . 
H 6 HOH AAA 104 704 123 HOH HOH . 
H 6 HOH AAA 105 705 94 HOH HOH . 
H 6 HOH AAA 106 706 56 HOH HOH . 
H 6 HOH AAA 107 707 109 HOH HOH . 
H 6 HOH AAA 108 708 22 HOH HOH . 
H 6 HOH AAA 109 709 88 HOH HOH . 
H 6 HOH AAA 110 710 5 HOH HOH . 
H 6 HOH AAA 111 711 110 HOH HOH . 
H 6 HOH AAA 112 712 125 HOH HOH . 
H 6 HOH AAA 113 713 69 HOH HOH . 
H 6 HOH AAA 114 714 130 HOH HOH . 
H 6 HOH AAA 115 715 33 HOH HOH . 
H 6 HOH AAA 116 716 3 HOH HOH . 
H 6 HOH AAA 117 717 105 HOH HOH . 
H 6 HOH AAA 118 718 72 HOH HOH . 
H 6 HOH AAA 119 719 14 HOH HOH . 
H 6 HOH AAA 120 720 90 HOH HOH . 
H 6 HOH AAA 121 721 138 HOH HOH . 
H 6 HOH AAA 122 722 81 HOH HOH . 
H 6 HOH AAA 123 723 96 HOH HOH . 
H 6 HOH AAA 124 724 124 HOH HOH . 
H 6 HOH AAA 125 725 91 HOH HOH . 
H 6 HOH AAA 126 726 132 HOH HOH . 
H 6 HOH AAA 127 727 82 HOH HOH . 
H 6 HOH AAA 128 728 85 HOH HOH . 
H 6 HOH AAA 129 729 77 HOH HOH . 
H 6 HOH AAA 130 730 51 HOH HOH . 
H 6 HOH AAA 131 731 80 HOH HOH . 
H 6 HOH AAA 132 732 86 HOH HOH . 
H 6 HOH AAA 133 733 135 HOH HOH . 
H 6 HOH AAA 134 734 89 HOH HOH . 
H 6 HOH AAA 135 735 61 HOH HOH . 
H 6 HOH AAA 136 736 108 HOH HOH . 
H 6 HOH AAA 137 737 126 HOH HOH . 
H 6 HOH AAA 138 738 146 HOH HOH . 
H 6 HOH AAA 139 739 95 HOH HOH . 
H 6 HOH AAA 140 740 92 HOH HOH . 
H 6 HOH AAA 141 741 128 HOH HOH . 
H 6 HOH AAA 142 742 142 HOH HOH . 
H 6 HOH AAA 143 743 73 HOH HOH . 
H 6 HOH AAA 144 744 93 HOH HOH . 
H 6 HOH AAA 145 745 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -59.986 61.879 18.513 1 68.19 ? C1 GOL 501 AAA 1 
HETATM 2 O O1 GOL . . . C 3 -60.846 61.928 17.376 1 71.19 ? O1 GOL 501 AAA 1 
HETATM 3 C C2 GOL . . . C 3 -58.553 62.222 18.146 1 64.31 ? C2 GOL 501 AAA 1 
HETATM 4 O O2 GOL . . . C 3 -57.635 61.266 18.683 1 57.61 ? O2 GOL 501 AAA 1 
HETATM 5 C C3 GOL . . . C 3 -58.125 63.606 18.594 1 64.26 ? C3 GOL 501 AAA 1 
HETATM 6 O O3 GOL . . . C 3 -58.617 64.634 17.742 1 56.87 ? O3 GOL 501 AAA 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           36 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#