data_6TD2 # _model_server_result.job_id m0xwsKD-hmHawugZ1tl-Mw _model_server_result.datetime_utc '2024-12-27 03:50:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6td2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 6TD2 # _exptl.entry_id 6TD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TD2 _cell.length_a 78.957 _cell.length_b 111.957 _cell.length_c 227.429 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 322 n n C1 O1 NAG sing 323 n n C1 O5 NAG sing 324 n n C1 H1 NAG sing 325 n n C2 C3 NAG sing 326 n n C2 N2 NAG sing 327 n n C2 H2 NAG sing 328 n n C3 C4 NAG sing 329 n n C3 O3 NAG sing 330 n n C3 H3 NAG sing 331 n n C4 C5 NAG sing 332 n n C4 O4 NAG sing 333 n n C4 H4 NAG sing 334 n n C5 C6 NAG sing 335 n n C5 O5 NAG sing 336 n n C5 H5 NAG sing 337 n n C6 O6 NAG sing 338 n n C6 H61 NAG sing 339 n n C6 H62 NAG sing 340 n n C7 C8 NAG sing 341 n n C7 N2 NAG sing 342 n n C7 O7 NAG doub 343 n n C8 H81 NAG sing 344 n n C8 H82 NAG sing 345 n n C8 H83 NAG sing 346 n n N2 HN2 NAG sing 347 n n O1 HO1 NAG sing 348 n n O3 HO3 NAG sing 349 n n O4 HO4 NAG sing 350 n n O6 HO6 NAG sing 351 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6TD2 _atom_sites.fract_transf_matrix[1][1] 0.012665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008932 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 601 NAG NAG . D 2 NAG A 1 602 602 NAG NAG . E 3 N2K A 1 603 600 N2K A37 . F 4 EDO A 1 604 1 EDO EDO . G 4 EDO A 1 605 3 EDO EDO . H 4 EDO A 1 606 6 EDO EDO . I 5 PG0 A 1 607 1 PG0 P2G . J 5 PG0 A 1 608 2 PG0 P2G . K 5 PG0 A 1 609 5 PG0 P2G . L 6 PE4 A 1 610 1 PE4 P7G . M 3 N2K B 1 601 600 N2K A37 . N 4 EDO B 1 602 2 EDO EDO . O 4 EDO B 1 603 4 EDO EDO . P 4 EDO B 1 604 5 EDO EDO . Q 5 PG0 B 1 605 3 PG0 P2G . R 5 PG0 B 1 606 4 PG0 P2G . S 7 ETE B 1 607 1 ETE P4G . T 8 HOH A 1 701 57 HOH HOH . T 8 HOH A 2 702 23 HOH HOH . T 8 HOH A 3 703 553 HOH HOH . T 8 HOH A 4 704 4 HOH HOH . T 8 HOH A 5 705 209 HOH HOH . T 8 HOH A 6 706 22 HOH HOH . T 8 HOH A 7 707 44 HOH HOH . T 8 HOH A 8 708 8 HOH HOH . T 8 HOH A 9 709 306 HOH HOH . T 8 HOH A 10 710 27 HOH HOH . T 8 HOH A 11 711 549 HOH HOH . T 8 HOH A 12 712 559 HOH HOH . T 8 HOH A 13 713 2 HOH HOH . T 8 HOH A 14 714 221 HOH HOH . T 8 HOH A 15 715 7 HOH HOH . T 8 HOH A 16 716 542 HOH HOH . T 8 HOH A 17 717 230 HOH HOH . T 8 HOH A 18 718 548 HOH HOH . T 8 HOH A 19 719 346 HOH HOH . T 8 HOH A 20 720 537 HOH HOH . T 8 HOH A 21 721 509 HOH HOH . T 8 HOH A 22 722 217 HOH HOH . T 8 HOH A 23 723 224 HOH HOH . T 8 HOH A 24 724 269 HOH HOH . T 8 HOH A 25 725 532 HOH HOH . T 8 HOH A 26 726 550 HOH HOH . T 8 HOH A 27 727 521 HOH HOH . T 8 HOH A 28 728 507 HOH HOH . T 8 HOH A 29 729 18 HOH HOH . T 8 HOH A 30 730 557 HOH HOH . T 8 HOH A 31 731 66 HOH HOH . T 8 HOH A 32 732 186 HOH HOH . T 8 HOH A 33 733 524 HOH HOH . T 8 HOH A 34 734 317 HOH HOH . T 8 HOH A 35 735 311 HOH HOH . T 8 HOH A 36 736 538 HOH HOH . T 8 HOH A 37 737 276 HOH HOH . T 8 HOH A 38 738 558 HOH HOH . T 8 HOH A 39 739 49 HOH HOH . T 8 HOH A 40 740 121 HOH HOH . T 8 HOH A 41 741 560 HOH HOH . T 8 HOH A 42 742 24 HOH HOH . T 8 HOH A 43 743 554 HOH HOH . T 8 HOH A 44 744 308 HOH HOH . T 8 HOH A 45 745 64 HOH HOH . T 8 HOH A 46 746 144 HOH HOH . T 8 HOH A 47 747 391 HOH HOH . T 8 HOH A 48 748 34 HOH HOH . T 8 HOH A 49 749 551 HOH HOH . T 8 HOH A 50 750 345 HOH HOH . T 8 HOH A 51 751 426 HOH HOH . T 8 HOH A 52 752 26 HOH HOH . T 8 HOH A 53 753 5 HOH HOH . T 8 HOH A 54 754 99 HOH HOH . T 8 HOH A 55 755 85 HOH HOH . T 8 HOH A 56 756 120 HOH HOH . T 8 HOH A 57 757 71 HOH HOH . T 8 HOH A 58 758 516 HOH HOH . T 8 HOH A 59 759 302 HOH HOH . T 8 HOH A 60 760 220 HOH HOH . T 8 HOH A 61 761 389 HOH HOH . T 8 HOH A 62 762 428 HOH HOH . T 8 HOH A 63 763 519 HOH HOH . T 8 HOH A 64 764 183 HOH HOH . T 8 HOH A 65 765 21 HOH HOH . T 8 HOH A 66 766 435 HOH HOH . T 8 HOH A 67 767 503 HOH HOH . T 8 HOH A 68 768 75 HOH HOH . T 8 HOH A 69 769 40 HOH HOH . T 8 HOH A 70 770 101 HOH HOH . T 8 HOH A 71 771 578 HOH HOH . T 8 HOH A 72 772 223 HOH HOH . T 8 HOH A 73 773 277 HOH HOH . T 8 HOH A 74 774 398 HOH HOH . T 8 HOH A 75 775 215 HOH HOH . T 8 HOH A 76 776 278 HOH HOH . T 8 HOH A 77 777 234 HOH HOH . T 8 HOH A 78 778 51 HOH HOH . T 8 HOH A 79 779 522 HOH HOH . T 8 HOH A 80 780 494 HOH HOH . T 8 HOH A 81 781 523 HOH HOH . T 8 HOH A 82 782 39 HOH HOH . T 8 HOH A 83 783 211 HOH HOH . T 8 HOH A 84 784 231 HOH HOH . T 8 HOH A 85 785 213 HOH HOH . T 8 HOH A 86 786 148 HOH HOH . T 8 HOH A 87 787 546 HOH HOH . T 8 HOH A 88 788 575 HOH HOH . T 8 HOH A 89 789 219 HOH HOH . T 8 HOH A 90 790 233 HOH HOH . T 8 HOH A 91 791 268 HOH HOH . T 8 HOH A 92 792 214 HOH HOH . T 8 HOH A 93 793 483 HOH HOH . T 8 HOH A 94 794 545 HOH HOH . T 8 HOH A 95 795 210 HOH HOH . T 8 HOH A 96 796 588 HOH HOH . T 8 HOH A 97 797 469 HOH HOH . T 8 HOH A 98 798 216 HOH HOH . U 8 HOH B 1 701 563 HOH HOH . U 8 HOH B 2 702 250 HOH HOH . U 8 HOH B 3 703 257 HOH HOH . U 8 HOH B 4 704 527 HOH HOH . U 8 HOH B 5 705 263 HOH HOH . U 8 HOH B 6 706 254 HOH HOH . U 8 HOH B 7 707 512 HOH HOH . U 8 HOH B 8 708 576 HOH HOH . U 8 HOH B 9 709 239 HOH HOH . U 8 HOH B 10 710 561 HOH HOH . U 8 HOH B 11 711 245 HOH HOH . U 8 HOH B 12 712 499 HOH HOH . U 8 HOH B 13 713 577 HOH HOH . U 8 HOH B 14 714 294 HOH HOH . U 8 HOH B 15 715 567 HOH HOH . U 8 HOH B 16 716 332 HOH HOH . U 8 HOH B 17 717 175 HOH HOH . U 8 HOH B 18 718 498 HOH HOH . U 8 HOH B 19 719 16 HOH HOH . U 8 HOH B 20 720 579 HOH HOH . U 8 HOH B 21 721 11 HOH HOH . U 8 HOH B 22 722 581 HOH HOH . U 8 HOH B 23 723 83 HOH HOH . U 8 HOH B 24 724 566 HOH HOH . U 8 HOH B 25 725 9 HOH HOH . U 8 HOH B 26 726 573 HOH HOH . U 8 HOH B 27 727 454 HOH HOH . U 8 HOH B 28 728 35 HOH HOH . U 8 HOH B 29 729 493 HOH HOH . U 8 HOH B 30 730 305 HOH HOH . U 8 HOH B 31 731 337 HOH HOH . U 8 HOH B 32 732 500 HOH HOH . U 8 HOH B 33 733 342 HOH HOH . U 8 HOH B 34 734 110 HOH HOH . U 8 HOH B 35 735 65 HOH HOH . U 8 HOH B 36 736 564 HOH HOH . U 8 HOH B 37 737 46 HOH HOH . U 8 HOH B 38 738 386 HOH HOH . U 8 HOH B 39 739 208 HOH HOH . U 8 HOH B 40 740 113 HOH HOH . U 8 HOH B 41 741 525 HOH HOH . U 8 HOH B 42 742 321 HOH HOH . U 8 HOH B 43 743 38 HOH HOH . U 8 HOH B 44 744 204 HOH HOH . U 8 HOH B 45 745 255 HOH HOH . U 8 HOH B 46 746 297 HOH HOH . U 8 HOH B 47 747 76 HOH HOH . U 8 HOH B 48 748 163 HOH HOH . U 8 HOH B 49 749 125 HOH HOH . U 8 HOH B 50 750 328 HOH HOH . U 8 HOH B 51 751 167 HOH HOH . U 8 HOH B 52 752 385 HOH HOH . U 8 HOH B 53 753 529 HOH HOH . U 8 HOH B 54 754 48 HOH HOH . U 8 HOH B 55 755 266 HOH HOH . U 8 HOH B 56 756 20 HOH HOH . U 8 HOH B 57 757 286 HOH HOH . U 8 HOH B 58 758 78 HOH HOH . U 8 HOH B 59 759 284 HOH HOH . U 8 HOH B 60 760 235 HOH HOH . U 8 HOH B 61 761 502 HOH HOH . U 8 HOH B 62 762 299 HOH HOH . U 8 HOH B 63 763 497 HOH HOH . U 8 HOH B 64 764 238 HOH HOH . U 8 HOH B 65 765 236 HOH HOH . U 8 HOH B 66 766 495 HOH HOH . U 8 HOH B 67 767 280 HOH HOH . U 8 HOH B 68 768 246 HOH HOH . U 8 HOH B 69 769 281 HOH HOH . U 8 HOH B 70 770 261 HOH HOH . U 8 HOH B 71 771 300 HOH HOH . U 8 HOH B 72 772 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 2 11.956 34.131 25.503 1 93.03 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . D 2 13.329 34.837 25.384 1 104.12 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . D 2 13.426 35.982 26.403 1 106.75 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . D 2 12.269 36.953 26.201 1 104.31 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . D 2 10.953 36.199 26.378 1 103 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . D 2 9.732 37.066 26.167 1 101.53 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . D 2 15.017 33.257 24.535 1 100.86 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . D 2 16.13 32.318 24.902 1 94.82 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . D 2 14.428 33.897 25.555 1 104.02 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . D 2 14.674 36.662 26.312 1 105.69 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . D 2 12.354 38.052 27.103 1 99.94 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . D 2 10.877 35.126 25.422 1 101.25 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . D 2 8.54 36.408 26.58 1 98.12 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . D 2 14.667 33.427 23.368 1 100.28 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #