data_6TD2
#
_model_server_result.job_id            8TMH7LiuDfaf920EmRhsrw 
_model_server_result.datetime_utc      '2024-12-27 03:02:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6td2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":605}' 
#
_entry.id    6TD2 
#
_exptl.entry_id    6TD2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TD2 
_cell.length_a            78.957 
_cell.length_b            111.957 
_cell.length_c            227.429 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TD2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     6TD2 
_atom_sites.fract_transf_matrix[1][1]    0.012665 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 601 601 NAG NAG . 
D 2 NAG A 1 602 602 NAG NAG . 
E 3 N2K A 1 603 600 N2K A37 . 
F 4 EDO A 1 604 1 EDO EDO . 
G 4 EDO A 1 605 3 EDO EDO . 
H 4 EDO A 1 606 6 EDO EDO . 
I 5 PG0 A 1 607 1 PG0 P2G . 
J 5 PG0 A 1 608 2 PG0 P2G . 
K 5 PG0 A 1 609 5 PG0 P2G . 
L 6 PE4 A 1 610 1 PE4 P7G . 
M 3 N2K B 1 601 600 N2K A37 . 
N 4 EDO B 1 602 2 EDO EDO . 
O 4 EDO B 1 603 4 EDO EDO . 
P 4 EDO B 1 604 5 EDO EDO . 
Q 5 PG0 B 1 605 3 PG0 P2G . 
R 5 PG0 B 1 606 4 PG0 P2G . 
S 7 ETE B 1 607 1 ETE P4G . 
T 8 HOH A 1 701 57 HOH HOH . 
T 8 HOH A 2 702 23 HOH HOH . 
T 8 HOH A 3 703 553 HOH HOH . 
T 8 HOH A 4 704 4 HOH HOH . 
T 8 HOH A 5 705 209 HOH HOH . 
T 8 HOH A 6 706 22 HOH HOH . 
T 8 HOH A 7 707 44 HOH HOH . 
T 8 HOH A 8 708 8 HOH HOH . 
T 8 HOH A 9 709 306 HOH HOH . 
T 8 HOH A 10 710 27 HOH HOH . 
T 8 HOH A 11 711 549 HOH HOH . 
T 8 HOH A 12 712 559 HOH HOH . 
T 8 HOH A 13 713 2 HOH HOH . 
T 8 HOH A 14 714 221 HOH HOH . 
T 8 HOH A 15 715 7 HOH HOH . 
T 8 HOH A 16 716 542 HOH HOH . 
T 8 HOH A 17 717 230 HOH HOH . 
T 8 HOH A 18 718 548 HOH HOH . 
T 8 HOH A 19 719 346 HOH HOH . 
T 8 HOH A 20 720 537 HOH HOH . 
T 8 HOH A 21 721 509 HOH HOH . 
T 8 HOH A 22 722 217 HOH HOH . 
T 8 HOH A 23 723 224 HOH HOH . 
T 8 HOH A 24 724 269 HOH HOH . 
T 8 HOH A 25 725 532 HOH HOH . 
T 8 HOH A 26 726 550 HOH HOH . 
T 8 HOH A 27 727 521 HOH HOH . 
T 8 HOH A 28 728 507 HOH HOH . 
T 8 HOH A 29 729 18 HOH HOH . 
T 8 HOH A 30 730 557 HOH HOH . 
T 8 HOH A 31 731 66 HOH HOH . 
T 8 HOH A 32 732 186 HOH HOH . 
T 8 HOH A 33 733 524 HOH HOH . 
T 8 HOH A 34 734 317 HOH HOH . 
T 8 HOH A 35 735 311 HOH HOH . 
T 8 HOH A 36 736 538 HOH HOH . 
T 8 HOH A 37 737 276 HOH HOH . 
T 8 HOH A 38 738 558 HOH HOH . 
T 8 HOH A 39 739 49 HOH HOH . 
T 8 HOH A 40 740 121 HOH HOH . 
T 8 HOH A 41 741 560 HOH HOH . 
T 8 HOH A 42 742 24 HOH HOH . 
T 8 HOH A 43 743 554 HOH HOH . 
T 8 HOH A 44 744 308 HOH HOH . 
T 8 HOH A 45 745 64 HOH HOH . 
T 8 HOH A 46 746 144 HOH HOH . 
T 8 HOH A 47 747 391 HOH HOH . 
T 8 HOH A 48 748 34 HOH HOH . 
T 8 HOH A 49 749 551 HOH HOH . 
T 8 HOH A 50 750 345 HOH HOH . 
T 8 HOH A 51 751 426 HOH HOH . 
T 8 HOH A 52 752 26 HOH HOH . 
T 8 HOH A 53 753 5 HOH HOH . 
T 8 HOH A 54 754 99 HOH HOH . 
T 8 HOH A 55 755 85 HOH HOH . 
T 8 HOH A 56 756 120 HOH HOH . 
T 8 HOH A 57 757 71 HOH HOH . 
T 8 HOH A 58 758 516 HOH HOH . 
T 8 HOH A 59 759 302 HOH HOH . 
T 8 HOH A 60 760 220 HOH HOH . 
T 8 HOH A 61 761 389 HOH HOH . 
T 8 HOH A 62 762 428 HOH HOH . 
T 8 HOH A 63 763 519 HOH HOH . 
T 8 HOH A 64 764 183 HOH HOH . 
T 8 HOH A 65 765 21 HOH HOH . 
T 8 HOH A 66 766 435 HOH HOH . 
T 8 HOH A 67 767 503 HOH HOH . 
T 8 HOH A 68 768 75 HOH HOH . 
T 8 HOH A 69 769 40 HOH HOH . 
T 8 HOH A 70 770 101 HOH HOH . 
T 8 HOH A 71 771 578 HOH HOH . 
T 8 HOH A 72 772 223 HOH HOH . 
T 8 HOH A 73 773 277 HOH HOH . 
T 8 HOH A 74 774 398 HOH HOH . 
T 8 HOH A 75 775 215 HOH HOH . 
T 8 HOH A 76 776 278 HOH HOH . 
T 8 HOH A 77 777 234 HOH HOH . 
T 8 HOH A 78 778 51 HOH HOH . 
T 8 HOH A 79 779 522 HOH HOH . 
T 8 HOH A 80 780 494 HOH HOH . 
T 8 HOH A 81 781 523 HOH HOH . 
T 8 HOH A 82 782 39 HOH HOH . 
T 8 HOH A 83 783 211 HOH HOH . 
T 8 HOH A 84 784 231 HOH HOH . 
T 8 HOH A 85 785 213 HOH HOH . 
T 8 HOH A 86 786 148 HOH HOH . 
T 8 HOH A 87 787 546 HOH HOH . 
T 8 HOH A 88 788 575 HOH HOH . 
T 8 HOH A 89 789 219 HOH HOH . 
T 8 HOH A 90 790 233 HOH HOH . 
T 8 HOH A 91 791 268 HOH HOH . 
T 8 HOH A 92 792 214 HOH HOH . 
T 8 HOH A 93 793 483 HOH HOH . 
T 8 HOH A 94 794 545 HOH HOH . 
T 8 HOH A 95 795 210 HOH HOH . 
T 8 HOH A 96 796 588 HOH HOH . 
T 8 HOH A 97 797 469 HOH HOH . 
T 8 HOH A 98 798 216 HOH HOH . 
U 8 HOH B 1 701 563 HOH HOH . 
U 8 HOH B 2 702 250 HOH HOH . 
U 8 HOH B 3 703 257 HOH HOH . 
U 8 HOH B 4 704 527 HOH HOH . 
U 8 HOH B 5 705 263 HOH HOH . 
U 8 HOH B 6 706 254 HOH HOH . 
U 8 HOH B 7 707 512 HOH HOH . 
U 8 HOH B 8 708 576 HOH HOH . 
U 8 HOH B 9 709 239 HOH HOH . 
U 8 HOH B 10 710 561 HOH HOH . 
U 8 HOH B 11 711 245 HOH HOH . 
U 8 HOH B 12 712 499 HOH HOH . 
U 8 HOH B 13 713 577 HOH HOH . 
U 8 HOH B 14 714 294 HOH HOH . 
U 8 HOH B 15 715 567 HOH HOH . 
U 8 HOH B 16 716 332 HOH HOH . 
U 8 HOH B 17 717 175 HOH HOH . 
U 8 HOH B 18 718 498 HOH HOH . 
U 8 HOH B 19 719 16 HOH HOH . 
U 8 HOH B 20 720 579 HOH HOH . 
U 8 HOH B 21 721 11 HOH HOH . 
U 8 HOH B 22 722 581 HOH HOH . 
U 8 HOH B 23 723 83 HOH HOH . 
U 8 HOH B 24 724 566 HOH HOH . 
U 8 HOH B 25 725 9 HOH HOH . 
U 8 HOH B 26 726 573 HOH HOH . 
U 8 HOH B 27 727 454 HOH HOH . 
U 8 HOH B 28 728 35 HOH HOH . 
U 8 HOH B 29 729 493 HOH HOH . 
U 8 HOH B 30 730 305 HOH HOH . 
U 8 HOH B 31 731 337 HOH HOH . 
U 8 HOH B 32 732 500 HOH HOH . 
U 8 HOH B 33 733 342 HOH HOH . 
U 8 HOH B 34 734 110 HOH HOH . 
U 8 HOH B 35 735 65 HOH HOH . 
U 8 HOH B 36 736 564 HOH HOH . 
U 8 HOH B 37 737 46 HOH HOH . 
U 8 HOH B 38 738 386 HOH HOH . 
U 8 HOH B 39 739 208 HOH HOH . 
U 8 HOH B 40 740 113 HOH HOH . 
U 8 HOH B 41 741 525 HOH HOH . 
U 8 HOH B 42 742 321 HOH HOH . 
U 8 HOH B 43 743 38 HOH HOH . 
U 8 HOH B 44 744 204 HOH HOH . 
U 8 HOH B 45 745 255 HOH HOH . 
U 8 HOH B 46 746 297 HOH HOH . 
U 8 HOH B 47 747 76 HOH HOH . 
U 8 HOH B 48 748 163 HOH HOH . 
U 8 HOH B 49 749 125 HOH HOH . 
U 8 HOH B 50 750 328 HOH HOH . 
U 8 HOH B 51 751 167 HOH HOH . 
U 8 HOH B 52 752 385 HOH HOH . 
U 8 HOH B 53 753 529 HOH HOH . 
U 8 HOH B 54 754 48 HOH HOH . 
U 8 HOH B 55 755 266 HOH HOH . 
U 8 HOH B 56 756 20 HOH HOH . 
U 8 HOH B 57 757 286 HOH HOH . 
U 8 HOH B 58 758 78 HOH HOH . 
U 8 HOH B 59 759 284 HOH HOH . 
U 8 HOH B 60 760 235 HOH HOH . 
U 8 HOH B 61 761 502 HOH HOH . 
U 8 HOH B 62 762 299 HOH HOH . 
U 8 HOH B 63 763 497 HOH HOH . 
U 8 HOH B 64 764 238 HOH HOH . 
U 8 HOH B 65 765 236 HOH HOH . 
U 8 HOH B 66 766 495 HOH HOH . 
U 8 HOH B 67 767 280 HOH HOH . 
U 8 HOH B 68 768 246 HOH HOH . 
U 8 HOH B 69 769 281 HOH HOH . 
U 8 HOH B 70 770 261 HOH HOH . 
U 8 HOH B 71 771 300 HOH HOH . 
U 8 HOH B 72 772 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 14.141 24.645 34.114 1 73.34 ? C1 EDO 605 A 1 
HETATM 2 O O1 EDO . . . G 4 13.903 24.503 35.494 1 71.42 ? O1 EDO 605 A 1 
HETATM 3 C C2 EDO . . . G 4 15.687 24.698 33.889 1 67.07 ? C2 EDO 605 A 1 
HETATM 4 O O2 EDO . . . G 4 16.039 23.575 33.125 1 59.25 ? O2 EDO 605 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           4 
#