data_6TDE
#
_model_server_result.job_id            vgCYB8mrgK7NFKZtOIMrXA 
_model_server_result.datetime_utc      '2024-11-22 22:02:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tde 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":503}' 
#
_entry.id    6TDE 
#
_exptl.entry_id    6TDE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TDE 
_cell.length_a            64.477 
_cell.length_b            128.142 
_cell.length_c            251.117 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TDE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 G O1G GTP . A GTP 502 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc2 G O1B GTP . A GTP 502 1_555 H MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? 
metalc ? metalc3 H MG MG . A MG 503 1_555 W O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
metalc ? metalc4 H MG MG . A MG 503 1_555 W O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc5 H MG MG . A MG 503 1_555 W O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc6 H MG MG . A MG 503 1_555 W O HOH . A HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc7 P O1G GTP . C GTP 504 1_555 Q MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc8 P O1B GTP . C GTP 504 1_555 Q MG MG . C MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc9 Q MG MG . C MG 505 1_555 Y O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc10 Q MG MG . C MG 505 1_555 Y O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6TDE 
_atom_sites.fract_transf_matrix[1][1]    0.015509 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007804 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 SO4 A 1 501 452 SO4 SO4 . 
G 5 GTP A 1 502 501 GTP GTP . 
H 6 MG A 1 503 502 MG MG . 
I 4 SO4 B 1 501 456 SO4 SO4 . 
J 4 SO4 B 1 502 457 SO4 SO4 . 
K 7 GDP B 1 503 501 GDP GDP . 
L 8 N3Z B 1 504 701 N3Z EK8 . 
M 4 SO4 C 1 501 452 SO4 SO4 . 
N 4 SO4 C 1 502 453 SO4 SO4 . 
O 4 SO4 C 1 503 454 SO4 SO4 . 
P 5 GTP C 1 504 501 GTP GTP . 
Q 6 MG C 1 505 502 MG MG . 
R 4 SO4 D 1 501 456 SO4 SO4 . 
S 4 SO4 D 1 502 457 SO4 SO4 . 
T 4 SO4 D 1 503 458 SO4 SO4 . 
U 7 GDP D 1 504 501 GDP GDP . 
V 8 N3Z D 1 505 701 N3Z EK8 . 
W 9 HOH A 1 601 153 HOH HOH . 
W 9 HOH A 2 602 73 HOH HOH . 
W 9 HOH A 3 603 601 HOH HOH . 
W 9 HOH A 4 604 169 HOH HOH . 
W 9 HOH A 5 605 602 HOH HOH . 
W 9 HOH A 6 606 107 HOH HOH . 
W 9 HOH A 7 607 15 HOH HOH . 
W 9 HOH A 8 608 603 HOH HOH . 
W 9 HOH A 9 609 23 HOH HOH . 
W 9 HOH A 10 610 78 HOH HOH . 
W 9 HOH A 11 611 155 HOH HOH . 
W 9 HOH A 12 612 74 HOH HOH . 
W 9 HOH A 13 613 77 HOH HOH . 
W 9 HOH A 14 614 604 HOH HOH . 
W 9 HOH A 15 615 138 HOH HOH . 
W 9 HOH A 16 616 154 HOH HOH . 
W 9 HOH A 17 617 121 HOH HOH . 
W 9 HOH A 18 618 28 HOH HOH . 
W 9 HOH A 19 619 111 HOH HOH . 
W 9 HOH A 20 620 91 HOH HOH . 
W 9 HOH A 21 621 81 HOH HOH . 
W 9 HOH A 22 622 52 HOH HOH . 
W 9 HOH A 23 623 65 HOH HOH . 
W 9 HOH A 24 624 34 HOH HOH . 
W 9 HOH A 25 625 92 HOH HOH . 
W 9 HOH A 26 626 106 HOH HOH . 
W 9 HOH A 27 627 124 HOH HOH . 
W 9 HOH A 28 628 102 HOH HOH . 
W 9 HOH A 29 629 110 HOH HOH . 
W 9 HOH A 30 630 4 HOH HOH . 
W 9 HOH A 31 631 43 HOH HOH . 
W 9 HOH A 32 632 146 HOH HOH . 
W 9 HOH A 33 633 100 HOH HOH . 
W 9 HOH A 34 634 136 HOH HOH . 
W 9 HOH A 35 635 113 HOH HOH . 
W 9 HOH A 36 636 45 HOH HOH . 
W 9 HOH A 37 637 71 HOH HOH . 
W 9 HOH A 38 638 119 HOH HOH . 
W 9 HOH A 39 639 60 HOH HOH . 
X 9 HOH B 1 601 19 HOH HOH . 
X 9 HOH B 2 602 22 HOH HOH . 
X 9 HOH B 3 603 47 HOH HOH . 
X 9 HOH B 4 604 117 HOH HOH . 
X 9 HOH B 5 605 3 HOH HOH . 
X 9 HOH B 6 606 139 HOH HOH . 
X 9 HOH B 7 607 162 HOH HOH . 
X 9 HOH B 8 608 46 HOH HOH . 
X 9 HOH B 9 609 152 HOH HOH . 
X 9 HOH B 10 610 21 HOH HOH . 
X 9 HOH B 11 611 13 HOH HOH . 
X 9 HOH B 12 612 133 HOH HOH . 
X 9 HOH B 13 613 51 HOH HOH . 
X 9 HOH B 14 614 159 HOH HOH . 
X 9 HOH B 15 615 158 HOH HOH . 
X 9 HOH B 16 616 1 HOH HOH . 
X 9 HOH B 17 617 167 HOH HOH . 
X 9 HOH B 18 618 27 HOH HOH . 
X 9 HOH B 19 619 127 HOH HOH . 
X 9 HOH B 20 620 86 HOH HOH . 
X 9 HOH B 21 621 62 HOH HOH . 
X 9 HOH B 22 622 63 HOH HOH . 
X 9 HOH B 23 623 141 HOH HOH . 
X 9 HOH B 24 624 9 HOH HOH . 
X 9 HOH B 25 625 11 HOH HOH . 
X 9 HOH B 26 626 101 HOH HOH . 
X 9 HOH B 27 627 59 HOH HOH . 
X 9 HOH B 28 628 130 HOH HOH . 
X 9 HOH B 29 629 94 HOH HOH . 
X 9 HOH B 30 630 39 HOH HOH . 
X 9 HOH B 31 631 6 HOH HOH . 
Y 9 HOH C 1 601 603 HOH HOH . 
Y 9 HOH C 2 602 20 HOH HOH . 
Y 9 HOH C 3 603 601 HOH HOH . 
Y 9 HOH C 4 604 163 HOH HOH . 
Y 9 HOH C 5 605 170 HOH HOH . 
Y 9 HOH C 6 606 160 HOH HOH . 
Y 9 HOH C 7 607 150 HOH HOH . 
Y 9 HOH C 8 608 602 HOH HOH . 
Y 9 HOH C 9 609 24 HOH HOH . 
Y 9 HOH C 10 610 17 HOH HOH . 
Y 9 HOH C 11 611 156 HOH HOH . 
Y 9 HOH C 12 612 166 HOH HOH . 
Y 9 HOH C 13 613 68 HOH HOH . 
Y 9 HOH C 14 614 125 HOH HOH . 
Y 9 HOH C 15 615 165 HOH HOH . 
Y 9 HOH C 16 616 126 HOH HOH . 
Y 9 HOH C 17 617 171 HOH HOH . 
Y 9 HOH C 18 618 40 HOH HOH . 
Y 9 HOH C 19 619 49 HOH HOH . 
Y 9 HOH C 20 620 604 HOH HOH . 
Y 9 HOH C 21 621 135 HOH HOH . 
Y 9 HOH C 22 622 70 HOH HOH . 
Y 9 HOH C 23 623 12 HOH HOH . 
Y 9 HOH C 24 624 149 HOH HOH . 
Y 9 HOH C 25 625 37 HOH HOH . 
Y 9 HOH C 26 626 84 HOH HOH . 
Y 9 HOH C 27 627 143 HOH HOH . 
Y 9 HOH C 28 628 96 HOH HOH . 
Y 9 HOH C 29 629 16 HOH HOH . 
Y 9 HOH C 30 630 44 HOH HOH . 
Y 9 HOH C 31 631 161 HOH HOH . 
Y 9 HOH C 32 632 89 HOH HOH . 
Y 9 HOH C 33 633 41 HOH HOH . 
Y 9 HOH C 34 634 144 HOH HOH . 
Y 9 HOH C 35 635 25 HOH HOH . 
Y 9 HOH C 36 636 2 HOH HOH . 
Y 9 HOH C 37 637 54 HOH HOH . 
Y 9 HOH C 38 638 120 HOH HOH . 
Y 9 HOH C 39 639 82 HOH HOH . 
Y 9 HOH C 40 640 32 HOH HOH . 
Y 9 HOH C 41 641 112 HOH HOH . 
Y 9 HOH C 42 642 85 HOH HOH . 
Y 9 HOH C 43 643 35 HOH HOH . 
Y 9 HOH C 44 644 114 HOH HOH . 
Y 9 HOH C 45 645 168 HOH HOH . 
Y 9 HOH C 46 646 53 HOH HOH . 
Y 9 HOH C 47 647 76 HOH HOH . 
Y 9 HOH C 48 648 72 HOH HOH . 
Y 9 HOH C 49 649 79 HOH HOH . 
Y 9 HOH C 50 650 14 HOH HOH . 
Y 9 HOH C 51 651 7 HOH HOH . 
Y 9 HOH C 52 652 58 HOH HOH . 
Y 9 HOH C 53 653 104 HOH HOH . 
Y 9 HOH C 54 654 36 HOH HOH . 
Z 9 HOH D 1 601 30 HOH HOH . 
Z 9 HOH D 2 602 26 HOH HOH . 
Z 9 HOH D 3 603 148 HOH HOH . 
Z 9 HOH D 4 604 18 HOH HOH . 
Z 9 HOH D 5 605 147 HOH HOH . 
Z 9 HOH D 6 606 98 HOH HOH . 
Z 9 HOH D 7 607 83 HOH HOH . 
Z 9 HOH D 8 608 142 HOH HOH . 
Z 9 HOH D 9 609 157 HOH HOH . 
Z 9 HOH D 10 610 42 HOH HOH . 
Z 9 HOH D 11 611 109 HOH HOH . 
Z 9 HOH D 12 612 129 HOH HOH . 
Z 9 HOH D 13 613 137 HOH HOH . 
Z 9 HOH D 14 614 80 HOH HOH . 
Z 9 HOH D 15 615 99 HOH HOH . 
Z 9 HOH D 16 616 31 HOH HOH . 
Z 9 HOH D 17 617 75 HOH HOH . 
Z 9 HOH D 18 618 48 HOH HOH . 
Z 9 HOH D 19 619 93 HOH HOH . 
Z 9 HOH D 20 620 151 HOH HOH . 
Z 9 HOH D 21 621 33 HOH HOH . 
Z 9 HOH D 22 622 29 HOH HOH . 
Z 9 HOH D 23 623 56 HOH HOH . 
Z 9 HOH D 24 624 55 HOH HOH . 
Z 9 HOH D 25 625 50 HOH HOH . 
Z 9 HOH D 26 626 134 HOH HOH . 
Z 9 HOH D 27 627 69 HOH HOH . 
Z 9 HOH D 28 628 115 HOH HOH . 
Z 9 HOH D 29 629 61 HOH HOH . 
Z 9 HOH D 30 630 164 HOH HOH . 
Z 9 HOH D 31 631 90 HOH HOH . 
Z 9 HOH D 32 632 57 HOH HOH . 
Z 9 HOH D 33 633 95 HOH HOH . 
Z 9 HOH D 34 634 108 HOH HOH . 
AA 9 HOH E 1 201 38 HOH HOH . 
AA 9 HOH E 2 202 66 HOH HOH . 
AA 9 HOH E 3 203 10 HOH HOH . 
AA 9 HOH E 4 204 122 HOH HOH . 
AA 9 HOH E 5 205 67 HOH HOH . 
AA 9 HOH E 6 206 97 HOH HOH . 
AA 9 HOH E 7 207 145 HOH HOH . 
AA 9 HOH E 8 208 116 HOH HOH . 
AA 9 HOH E 9 209 103 HOH HOH . 
AA 9 HOH E 10 211 8 HOH HOH . 
AA 9 HOH E 11 212 87 HOH HOH . 
AA 9 HOH E 12 213 64 HOH HOH . 
AA 9 HOH E 13 214 118 HOH HOH . 
AA 9 HOH E 14 215 132 HOH HOH . 
AA 9 HOH E 15 216 5 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               6.46 
_atom_site.Cartn_y               50.387 
_atom_site.Cartn_z               75.155 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        54.3 
_atom_site.pdbx_formal_charge    2 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           503 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#