data_6TDF # _model_server_result.job_id 8dAMnPwWVdwvWjo7AJPYKg _model_server_result.datetime_utc '2024-11-15 08:56:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6TDF # _exptl.entry_id 6TDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDF _cell.length_a 70.96 _cell.length_b 101.71 _cell.length_c 55.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 27.955 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6TDF _atom_sites.fract_transf_matrix[1][1] 0.014092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 201 201 ACO ACO . C 3 N3Q A 1 202 1 N3Q DRG . D 4 G6P A 1 203 1 G6P G6P . E 5 HOH A 1 301 45 HOH HOH . E 5 HOH A 2 302 16 HOH HOH . E 5 HOH A 3 303 1 HOH HOH . E 5 HOH A 4 304 12 HOH HOH . E 5 HOH A 5 305 24 HOH HOH . E 5 HOH A 6 306 11 HOH HOH . E 5 HOH A 7 307 8 HOH HOH . E 5 HOH A 8 308 13 HOH HOH . E 5 HOH A 9 309 2 HOH HOH . E 5 HOH A 10 310 3 HOH HOH . E 5 HOH A 11 311 38 HOH HOH . E 5 HOH A 12 312 44 HOH HOH . E 5 HOH A 13 313 4 HOH HOH . E 5 HOH A 14 314 22 HOH HOH . E 5 HOH A 15 315 42 HOH HOH . E 5 HOH A 16 316 40 HOH HOH . E 5 HOH A 17 317 27 HOH HOH . E 5 HOH A 18 318 41 HOH HOH . E 5 HOH A 19 319 18 HOH HOH . E 5 HOH A 20 320 39 HOH HOH . E 5 HOH A 21 321 25 HOH HOH . E 5 HOH A 22 322 36 HOH HOH . E 5 HOH A 23 323 10 HOH HOH . E 5 HOH A 24 324 9 HOH HOH . E 5 HOH A 25 325 15 HOH HOH . E 5 HOH A 26 326 28 HOH HOH . E 5 HOH A 27 327 7 HOH HOH . E 5 HOH A 28 328 33 HOH HOH . E 5 HOH A 29 329 37 HOH HOH . E 5 HOH A 30 330 31 HOH HOH . E 5 HOH A 31 331 29 HOH HOH . E 5 HOH A 32 332 19 HOH HOH . E 5 HOH A 33 333 23 HOH HOH . E 5 HOH A 34 334 5 HOH HOH . E 5 HOH A 35 335 6 HOH HOH . E 5 HOH A 36 336 35 HOH HOH . E 5 HOH A 37 337 14 HOH HOH . E 5 HOH A 38 338 17 HOH HOH . E 5 HOH A 39 339 26 HOH HOH . E 5 HOH A 40 340 30 HOH HOH . E 5 HOH A 41 341 20 HOH HOH . E 5 HOH A 42 342 43 HOH HOH . E 5 HOH A 43 343 21 HOH HOH . E 5 HOH A 44 344 34 HOH HOH . E 5 HOH A 45 345 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 -10.236 0.16 2.111 1 33.96 ? N1A ACO 201 A 1 HETATM 2 C C2A ACO . . . B 2 -11.439 0.607 2.538 1 36.84 ? C2A ACO 201 A 1 HETATM 3 N N3A ACO . . . B 2 -12.585 -0.024 2.223 1 36.16 ? N3A ACO 201 A 1 HETATM 4 C C4A ACO . . . B 2 -12.575 -1.162 1.477 1 37.26 ? C4A ACO 201 A 1 HETATM 5 C C5A ACO . . . B 2 -11.305 -1.691 1.01 1 34.19 ? C5A ACO 201 A 1 HETATM 6 C C6A ACO . . . B 2 -10.095 -0.95 1.37 1 35.48 ? C6A ACO 201 A 1 HETATM 7 N N6A ACO . . . B 2 -8.876 -1.43 0.983 1 36.66 ? N6A ACO 201 A 1 HETATM 8 N N7A ACO . . . B 2 -11.589 -2.811 0.312 1 39.14 ? N7A ACO 201 A 1 HETATM 9 C C8A ACO . . . B 2 -12.926 -2.997 0.303 1 34.84 ? C8A ACO 201 A 1 HETATM 10 N N9A ACO . . . B 2 -13.499 -2.014 1.003 1 37.72 ? N9A ACO 201 A 1 HETATM 11 C C1B ACO . . . B 2 -14.923 -1.84 1.277 1 40.33 ? C1B ACO 201 A 1 HETATM 12 C C2B ACO . . . B 2 -15.857 -2.212 0.153 1 43.44 ? C2B ACO 201 A 1 HETATM 13 O O2B ACO . . . B 2 -16.022 -1.079 -0.688 1 48.82 ? O2B ACO 201 A 1 HETATM 14 C C3B ACO . . . B 2 -17.112 -2.633 0.906 1 44.51 ? C3B ACO 201 A 1 HETATM 15 O O3B ACO . . . B 2 -17.785 -1.468 1.324 1 50.8 ? O3B ACO 201 A 1 HETATM 16 P P3B ACO . . . B 2 -19.351 -1.347 1.715 1 52.68 ? P3B ACO 201 A 1 HETATM 17 O O7A ACO . . . B 2 -19.706 -2.266 2.866 1 57.39 ? O7A ACO 201 A 1 HETATM 18 O O8A ACO . . . B 2 -19.432 0.078 2.202 1 49.02 ? O8A ACO 201 A 1 HETATM 19 O O9A ACO . . . B 2 -19.816 -1.756 0.362 1 42.59 ? O9A ACO 201 A 1 HETATM 20 C C4B ACO . . . B 2 -16.551 -3.277 2.16 1 44.43 ? C4B ACO 201 A 1 HETATM 21 O O4B ACO . . . B 2 -15.229 -2.706 2.351 1 45.4 ? O4B ACO 201 A 1 HETATM 22 C C5B ACO . . . B 2 -16.449 -4.797 2.044 1 43.22 ? C5B ACO 201 A 1 HETATM 23 O O5B ACO . . . B 2 -15.66 -5.102 0.909 1 40.04 ? O5B ACO 201 A 1 HETATM 24 P P1A ACO . . . B 2 -15.864 -6.311 -0.117 1 42.64 ? P1A ACO 201 A 1 HETATM 25 O O1A ACO . . . B 2 -16.51 -5.933 -1.41 1 37.87 ? O1A ACO 201 A 1 HETATM 26 O O2A ACO . . . B 2 -16.24 -7.495 0.694 1 45.13 ? O2A ACO 201 A 1 HETATM 27 O O3A ACO . . . B 2 -14.313 -6.353 -0.58 1 38.65 ? O3A ACO 201 A 1 HETATM 28 P P2A ACO . . . B 2 -13.527 -7.216 -1.666 1 45.03 ? P2A ACO 201 A 1 HETATM 29 O O4A ACO . . . B 2 -12.75 -6.403 -2.608 1 40.62 ? O4A ACO 201 A 1 HETATM 30 O O5A ACO . . . B 2 -14.415 -8.353 -2.1 1 47.61 ? O5A ACO 201 A 1 HETATM 31 O O6A ACO . . . B 2 -12.392 -7.82 -0.717 1 45.35 ? O6A ACO 201 A 1 HETATM 32 C CBP ACO . . . B 2 -10.11 -7.582 -0.175 1 38.42 ? CBP ACO 201 A 1 HETATM 33 C CCP ACO . . . B 2 -11.497 -6.993 0 1 42.95 ? CCP ACO 201 A 1 HETATM 34 C CDP ACO . . . B 2 -10.11 -8.977 0.414 1 41.23 ? CDP ACO 201 A 1 HETATM 35 C CEP ACO . . . B 2 -9.182 -6.632 0.545 1 40.02 ? CEP ACO 201 A 1 HETATM 36 C CAP ACO . . . B 2 -9.8 -7.715 -1.664 1 37.33 ? CAP ACO 201 A 1 HETATM 37 O OAP ACO . . . B 2 -10.038 -6.443 -2.26 1 39.27 ? OAP ACO 201 A 1 HETATM 38 C C9P ACO . . . B 2 -8.411 -8.13 -2.057 1 38.39 ? C9P ACO 201 A 1 HETATM 39 O O9P ACO . . . B 2 -8.143 -9.273 -2.385 1 33.59 ? O9P ACO 201 A 1 HETATM 40 N N8P ACO . . . B 2 -7.463 -7.195 -2.088 1 34.01 ? N8P ACO 201 A 1 HETATM 41 C C7P ACO . . . B 2 -6.109 -7.595 -2.404 1 36.17 ? C7P ACO 201 A 1 HETATM 42 C C6P ACO . . . B 2 -5.43 -8.554 -1.412 1 39.46 ? C6P ACO 201 A 1 HETATM 43 C C5P ACO . . . B 2 -5.413 -8.031 0.019 1 44.57 ? C5P ACO 201 A 1 HETATM 44 O O5P ACO . . . B 2 -5.046 -6.909 0.294 1 47.58 ? O5P ACO 201 A 1 HETATM 45 N N4P ACO . . . B 2 -5.807 -8.861 0.984 1 44.31 ? N4P ACO 201 A 1 HETATM 46 C C3P ACO . . . B 2 -5.805 -8.491 2.385 1 41.43 ? C3P ACO 201 A 1 HETATM 47 C C2P ACO . . . B 2 -4.483 -8.872 3.086 1 41.73 ? C2P ACO 201 A 1 HETATM 48 S S1P ACO . . . B 2 -4.717 -8.63 4.851 1 41.95 ? S1P ACO 201 A 1 HETATM 49 C C ACO . . . B 2 -5.002 -10.218 5.397 1 41.94 ? C ACO 201 A 1 HETATM 50 O O ACO . . . B 2 -4.896 -11.168 4.619 1 40.59 ? O ACO 201 A 1 HETATM 51 C CH3 ACO . . . B 2 -5.391 -10.463 6.832 1 42.35 ? CH3 ACO 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #