data_6TDF # _model_server_result.job_id -5yTFduP_CSIlPlTfKAUuQ _model_server_result.datetime_utc '2024-11-15 08:18:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6TDF # _exptl.entry_id 6TDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDF _cell.length_a 70.96 _cell.length_b 101.71 _cell.length_c 55.91 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 27.955 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 174 n n C1 O1 G6P sing 175 n n C1 O5 G6P sing 176 n n C1 H1 G6P sing 177 n n C2 C3 G6P sing 178 n n C2 O2 G6P sing 179 n n C2 H2 G6P sing 180 n n C3 C4 G6P sing 181 n n C3 O3 G6P sing 182 n n C3 H3 G6P sing 183 n n C4 C5 G6P sing 184 n n C4 O4 G6P sing 185 n n C4 H4 G6P sing 186 n n C5 C6 G6P sing 187 n n C5 O5 G6P sing 188 n n C5 H5 G6P sing 189 n n C6 O6 G6P sing 190 n n C6 H61 G6P sing 191 n n C6 H62 G6P sing 192 n n O1 HO1 G6P sing 193 n n O2 HO2 G6P sing 194 n n O3 HO3 G6P sing 195 n n O4 HO4 G6P sing 196 n n O6 P G6P sing 197 n n P O1P G6P sing 198 n n P O2P G6P sing 199 n n P O3P G6P doub 200 n n O1P HO1P G6P sing 201 n n O2P HO2P G6P sing 202 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6TDF _atom_sites.fract_transf_matrix[1][1] 0.014092 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 201 201 ACO ACO . C 3 N3Q A 1 202 1 N3Q DRG . D 4 G6P A 1 203 1 G6P G6P . E 5 HOH A 1 301 45 HOH HOH . E 5 HOH A 2 302 16 HOH HOH . E 5 HOH A 3 303 1 HOH HOH . E 5 HOH A 4 304 12 HOH HOH . E 5 HOH A 5 305 24 HOH HOH . E 5 HOH A 6 306 11 HOH HOH . E 5 HOH A 7 307 8 HOH HOH . E 5 HOH A 8 308 13 HOH HOH . E 5 HOH A 9 309 2 HOH HOH . E 5 HOH A 10 310 3 HOH HOH . E 5 HOH A 11 311 38 HOH HOH . E 5 HOH A 12 312 44 HOH HOH . E 5 HOH A 13 313 4 HOH HOH . E 5 HOH A 14 314 22 HOH HOH . E 5 HOH A 15 315 42 HOH HOH . E 5 HOH A 16 316 40 HOH HOH . E 5 HOH A 17 317 27 HOH HOH . E 5 HOH A 18 318 41 HOH HOH . E 5 HOH A 19 319 18 HOH HOH . E 5 HOH A 20 320 39 HOH HOH . E 5 HOH A 21 321 25 HOH HOH . E 5 HOH A 22 322 36 HOH HOH . E 5 HOH A 23 323 10 HOH HOH . E 5 HOH A 24 324 9 HOH HOH . E 5 HOH A 25 325 15 HOH HOH . E 5 HOH A 26 326 28 HOH HOH . E 5 HOH A 27 327 7 HOH HOH . E 5 HOH A 28 328 33 HOH HOH . E 5 HOH A 29 329 37 HOH HOH . E 5 HOH A 30 330 31 HOH HOH . E 5 HOH A 31 331 29 HOH HOH . E 5 HOH A 32 332 19 HOH HOH . E 5 HOH A 33 333 23 HOH HOH . E 5 HOH A 34 334 5 HOH HOH . E 5 HOH A 35 335 6 HOH HOH . E 5 HOH A 36 336 35 HOH HOH . E 5 HOH A 37 337 14 HOH HOH . E 5 HOH A 38 338 17 HOH HOH . E 5 HOH A 39 339 26 HOH HOH . E 5 HOH A 40 340 30 HOH HOH . E 5 HOH A 41 341 20 HOH HOH . E 5 HOH A 42 342 43 HOH HOH . E 5 HOH A 43 343 21 HOH HOH . E 5 HOH A 44 344 34 HOH HOH . E 5 HOH A 45 345 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . D 4 -0.473 -12.054 5.588 1 78.44 ? C1 G6P 203 A 1 HETATM 2 C C2 G6P . . . D 4 -0.741 -10.64 6.139 1 74.03 ? C2 G6P 203 A 1 HETATM 3 C C3 G6P . . . D 4 -0.783 -9.515 5.108 1 79.06 ? C3 G6P 203 A 1 HETATM 4 C C4 G6P . . . D 4 0.202 -9.686 3.957 1 77.42 ? C4 G6P 203 A 1 HETATM 5 C C5 G6P . . . D 4 0.243 -11.097 3.371 1 79.14 ? C5 G6P 203 A 1 HETATM 6 C C6 G6P . . . D 4 1.411 -11.201 2.375 1 71.7 ? C6 G6P 203 A 1 HETATM 7 O O1 G6P . . . D 4 -1.746 -12.702 5.447 1 71.13 ? O1 G6P 203 A 1 HETATM 8 O O2 G6P . . . D 4 -2.016 -10.62 6.806 1 65.25 ? O2 G6P 203 A 1 HETATM 9 O O3 G6P . . . D 4 -0.539 -8.269 5.792 1 69.92 ? O3 G6P 203 A 1 HETATM 10 O O4 G6P . . . D 4 -0.179 -8.805 2.883 1 83.79 ? O4 G6P 203 A 1 HETATM 11 O O5 G6P . . . D 4 0.321 -12.143 4.366 1 82.49 ? O5 G6P 203 A 1 HETATM 12 O O6 G6P . . . D 4 2.522 -10.337 2.695 1 67.35 ? O6 G6P 203 A 1 HETATM 13 P P G6P . . . D 4 4.074 -10.875 2.619 1 78.56 ? P G6P 203 A 1 HETATM 14 O O1P G6P . . . D 4 4.158 -11.873 3.759 1 65.41 ? O1P G6P 203 A 1 HETATM 15 O O2P G6P . . . D 4 4.996 -9.68 2.786 1 67.74 ? O2P G6P 203 A 1 HETATM 16 O O3P G6P . . . D 4 4.173 -11.485 1.236 1 60.45 ? O3P G6P 203 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #