data_6TDH # _model_server_result.job_id zrsikFF12WXVkomvdmNZnw _model_server_result.datetime_utc '2024-11-16 06:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6TDH # _exptl.entry_id 6TDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDH _cell.length_a 67.641 _cell.length_b 102.51 _cell.length_c 56.621 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -28.3105 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 6TDH _atom_sites.fract_transf_matrix[1][1] 0.014784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 201 201 ACO ACO . C 3 N2Z A 1 202 301 N2Z LIG . D 4 HOH A 1 301 81 HOH HOH . D 4 HOH A 2 302 99 HOH HOH . D 4 HOH A 3 303 34 HOH HOH . D 4 HOH A 4 304 76 HOH HOH . D 4 HOH A 5 305 64 HOH HOH . D 4 HOH A 6 306 80 HOH HOH . D 4 HOH A 7 307 26 HOH HOH . D 4 HOH A 8 308 75 HOH HOH . D 4 HOH A 9 309 13 HOH HOH . D 4 HOH A 10 310 32 HOH HOH . D 4 HOH A 11 311 44 HOH HOH . D 4 HOH A 12 312 22 HOH HOH . D 4 HOH A 13 313 7 HOH HOH . D 4 HOH A 14 314 17 HOH HOH . D 4 HOH A 15 315 48 HOH HOH . D 4 HOH A 16 316 65 HOH HOH . D 4 HOH A 17 317 20 HOH HOH . D 4 HOH A 18 318 36 HOH HOH . D 4 HOH A 19 319 46 HOH HOH . D 4 HOH A 20 320 1 HOH HOH . D 4 HOH A 21 321 69 HOH HOH . D 4 HOH A 22 322 29 HOH HOH . D 4 HOH A 23 323 89 HOH HOH . D 4 HOH A 24 324 83 HOH HOH . D 4 HOH A 25 325 30 HOH HOH . D 4 HOH A 26 326 24 HOH HOH . D 4 HOH A 27 327 4 HOH HOH . D 4 HOH A 28 328 19 HOH HOH . D 4 HOH A 29 329 57 HOH HOH . D 4 HOH A 30 330 104 HOH HOH . D 4 HOH A 31 331 42 HOH HOH . D 4 HOH A 32 332 28 HOH HOH . D 4 HOH A 33 333 54 HOH HOH . D 4 HOH A 34 334 11 HOH HOH . D 4 HOH A 35 335 3 HOH HOH . D 4 HOH A 36 336 61 HOH HOH . D 4 HOH A 37 337 39 HOH HOH . D 4 HOH A 38 338 2 HOH HOH . D 4 HOH A 39 339 25 HOH HOH . D 4 HOH A 40 340 38 HOH HOH . D 4 HOH A 41 341 98 HOH HOH . D 4 HOH A 42 342 62 HOH HOH . D 4 HOH A 43 343 27 HOH HOH . D 4 HOH A 44 344 49 HOH HOH . D 4 HOH A 45 345 33 HOH HOH . D 4 HOH A 46 346 43 HOH HOH . D 4 HOH A 47 347 66 HOH HOH . D 4 HOH A 48 348 5 HOH HOH . D 4 HOH A 49 349 71 HOH HOH . D 4 HOH A 50 350 52 HOH HOH . D 4 HOH A 51 351 88 HOH HOH . D 4 HOH A 52 352 55 HOH HOH . D 4 HOH A 53 353 18 HOH HOH . D 4 HOH A 54 354 86 HOH HOH . D 4 HOH A 55 355 35 HOH HOH . D 4 HOH A 56 356 6 HOH HOH . D 4 HOH A 57 357 14 HOH HOH . D 4 HOH A 58 358 60 HOH HOH . D 4 HOH A 59 359 95 HOH HOH . D 4 HOH A 60 360 70 HOH HOH . D 4 HOH A 61 361 9 HOH HOH . D 4 HOH A 62 362 8 HOH HOH . D 4 HOH A 63 363 37 HOH HOH . D 4 HOH A 64 364 90 HOH HOH . D 4 HOH A 65 365 51 HOH HOH . D 4 HOH A 66 366 102 HOH HOH . D 4 HOH A 67 367 10 HOH HOH . D 4 HOH A 68 368 108 HOH HOH . D 4 HOH A 69 369 40 HOH HOH . D 4 HOH A 70 370 15 HOH HOH . D 4 HOH A 71 371 23 HOH HOH . D 4 HOH A 72 372 63 HOH HOH . D 4 HOH A 73 373 84 HOH HOH . D 4 HOH A 74 374 96 HOH HOH . D 4 HOH A 75 375 50 HOH HOH . D 4 HOH A 76 376 67 HOH HOH . D 4 HOH A 77 377 85 HOH HOH . D 4 HOH A 78 378 56 HOH HOH . D 4 HOH A 79 379 12 HOH HOH . D 4 HOH A 80 380 105 HOH HOH . D 4 HOH A 81 381 21 HOH HOH . D 4 HOH A 82 382 53 HOH HOH . D 4 HOH A 83 383 103 HOH HOH . D 4 HOH A 84 384 45 HOH HOH . D 4 HOH A 85 385 78 HOH HOH . D 4 HOH A 86 386 41 HOH HOH . D 4 HOH A 87 387 31 HOH HOH . D 4 HOH A 88 388 100 HOH HOH . D 4 HOH A 89 389 79 HOH HOH . D 4 HOH A 90 390 94 HOH HOH . D 4 HOH A 91 391 82 HOH HOH . D 4 HOH A 92 392 77 HOH HOH . D 4 HOH A 93 393 91 HOH HOH . D 4 HOH A 94 394 58 HOH HOH . D 4 HOH A 95 395 92 HOH HOH . D 4 HOH A 96 396 47 HOH HOH . D 4 HOH A 97 397 93 HOH HOH . D 4 HOH A 98 398 74 HOH HOH . D 4 HOH A 99 399 101 HOH HOH . D 4 HOH A 100 400 106 HOH HOH . D 4 HOH A 101 401 73 HOH HOH . D 4 HOH A 102 402 107 HOH HOH . D 4 HOH A 103 403 59 HOH HOH . D 4 HOH A 104 404 97 HOH HOH . D 4 HOH A 105 405 16 HOH HOH . D 4 HOH A 106 406 72 HOH HOH . D 4 HOH A 107 407 87 HOH HOH . D 4 HOH A 108 408 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 -9.962 -0.165 -2.028 1 28.7 ? N1A ACO 201 A 1 HETATM 2 C C2A ACO . . . B 2 -11.147 -0.599 -2.441 1 30.9 ? C2A ACO 201 A 1 HETATM 3 N N3A ACO . . . B 2 -12.314 0.033 -2.146 1 26.72 ? N3A ACO 201 A 1 HETATM 4 C C4A ACO . . . B 2 -12.262 1.188 -1.443 1 28.06 ? C4A ACO 201 A 1 HETATM 5 C C5A ACO . . . B 2 -11.017 1.707 -0.971 1 26.01 ? C5A ACO 201 A 1 HETATM 6 C C6A ACO . . . B 2 -9.817 0.977 -1.339 1 27.92 ? C6A ACO 201 A 1 HETATM 7 N N6A ACO . . . B 2 -8.608 1.425 -0.948 1 30.69 ? N6A ACO 201 A 1 HETATM 8 N N7A ACO . . . B 2 -11.264 2.865 -0.317 1 28.06 ? N7A ACO 201 A 1 HETATM 9 C C8A ACO . . . B 2 -12.584 3.04 -0.357 1 26.44 ? C8A ACO 201 A 1 HETATM 10 N N9A ACO . . . B 2 -13.201 2.028 -0.994 1 25.99 ? N9A ACO 201 A 1 HETATM 11 C C1B ACO . . . B 2 -14.618 1.927 -1.27 1 28.29 ? C1B ACO 201 A 1 HETATM 12 C C2B ACO . . . B 2 -15.531 2.337 -0.156 1 31.59 ? C2B ACO 201 A 1 HETATM 13 O O2B ACO . . . B 2 -15.732 1.27 0.776 1 32.3 ? O2B ACO 201 A 1 HETATM 14 C C3B ACO . . . B 2 -16.815 2.599 -0.934 1 30.17 ? C3B ACO 201 A 1 HETATM 15 O O3B ACO . . . B 2 -17.411 1.4 -1.429 1 31.29 ? O3B ACO 201 A 1 HETATM 16 P P3B ACO . . . B 2 -19.045 1.267 -1.613 1 40.95 ? P3B ACO 201 A 1 HETATM 17 O O7A ACO . . . B 2 -19.415 2.15 -2.78 1 50.45 ? O7A ACO 201 A 1 HETATM 18 O O8A ACO . . . B 2 -19.168 -0.166 -1.95 1 39.49 ? O8A ACO 201 A 1 HETATM 19 O O9A ACO . . . B 2 -19.482 1.783 -0.307 1 35.41 ? O9A ACO 201 A 1 HETATM 20 C C4B ACO . . . B 2 -16.282 3.283 -2.172 1 30.85 ? C4B ACO 201 A 1 HETATM 21 O O4B ACO . . . B 2 -14.956 2.798 -2.388 1 28.96 ? O4B ACO 201 A 1 HETATM 22 C C5B ACO . . . B 2 -16.199 4.788 -1.946 1 28.08 ? C5B ACO 201 A 1 HETATM 23 O O5B ACO . . . B 2 -15.246 5.081 -0.926 1 28.89 ? O5B ACO 201 A 1 HETATM 24 P P1A ACO . . . B 2 -15.395 6.303 0.126 1 28.92 ? P1A ACO 201 A 1 HETATM 25 O O1A ACO . . . B 2 -16.297 5.837 1.282 1 29.51 ? O1A ACO 201 A 1 HETATM 26 O O2A ACO . . . B 2 -15.802 7.556 -0.612 1 29.58 ? O2A ACO 201 A 1 HETATM 27 O O3A ACO . . . B 2 -13.938 6.39 0.649 1 28.89 ? O3A ACO 201 A 1 HETATM 28 P P2A ACO . . . B 2 -13.175 7.332 1.604 1 32.09 ? P2A ACO 201 A 1 HETATM 29 O O4A ACO . . . B 2 -12.495 6.53 2.627 1 37.76 ? O4A ACO 201 A 1 HETATM 30 O O5A ACO . . . B 2 -14.098 8.475 1.979 1 31.53 ? O5A ACO 201 A 1 HETATM 31 O O6A ACO . . . B 2 -12.041 7.961 0.717 1 32.43 ? O6A ACO 201 A 1 HETATM 32 C CBP ACO . . . B 2 -9.789 7.824 0.224 1 30.64 ? CBP ACO 201 A 1 HETATM 33 C CCP ACO . . . B 2 -11.103 7.17 -0.026 1 32.45 ? CCP ACO 201 A 1 HETATM 34 C CDP ACO . . . B 2 -9.851 9.3 -0.191 1 31.92 ? CDP ACO 201 A 1 HETATM 35 C CEP ACO . . . B 2 -8.771 6.977 -0.567 1 33.82 ? CEP ACO 201 A 1 HETATM 36 C CAP ACO . . . B 2 -9.466 7.817 1.741 1 32.3 ? CAP ACO 201 A 1 HETATM 37 O OAP ACO . . . B 2 -9.477 6.47 2.212 1 35.24 ? OAP ACO 201 A 1 HETATM 38 C C9P ACO . . . B 2 -8.169 8.446 2.136 1 29.52 ? C9P ACO 201 A 1 HETATM 39 O O9P ACO . . . B 2 -8.081 9.619 2.422 1 30.17 ? O9P ACO 201 A 1 HETATM 40 N N8P ACO . . . B 2 -7.01 7.714 2.166 1 32.66 ? N8P ACO 201 A 1 HETATM 41 C C7P ACO . . . B 2 -5.754 8.279 2.535 1 30.59 ? C7P ACO 201 A 1 HETATM 42 C C6P ACO . . . B 2 -5.108 9.279 1.568 1 31.98 ? C6P ACO 201 A 1 HETATM 43 C C5P ACO . . . B 2 -4.957 8.73 0.149 1 38.24 ? C5P ACO 201 A 1 HETATM 44 O O5P ACO . . . B 2 -4.375 7.657 -0.006 1 40.48 ? O5P ACO 201 A 1 HETATM 45 N N4P ACO . . . B 2 -5.448 9.441 -0.889 1 31.92 ? N4P ACO 201 A 1 HETATM 46 C C3P ACO . . . B 2 -5.261 9.071 -2.295 1 33.74 ? C3P ACO 201 A 1 HETATM 47 C C2P ACO . . . B 2 -3.946 9.678 -2.819 1 36.18 ? C2P ACO 201 A 1 HETATM 48 S S1P ACO . . . B 2 -3.843 9.335 -4.559 1 43.68 ? S1P ACO 201 A 1 HETATM 49 C C ACO . . . B 2 -4.729 10.561 -5.309 1 39.99 ? C ACO 201 A 1 HETATM 50 O O ACO . . . B 2 -5.244 11.433 -4.625 1 31.42 ? O ACO 201 A 1 HETATM 51 C CH3 ACO . . . B 2 -4.915 10.534 -6.799 1 31.73 ? CH3 ACO 201 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 51 #