data_6TDV # _model_server_result.job_id zUYUICyghm3ViJNHgMfc0A _model_server_result.datetime_utc '2024-12-26 13:19:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PB","auth_seq_id":102}' # _entry.id 6TDV # _exptl.entry_id 6TDV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 648.891 _entity.id 22 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 38-meric _pdbx_struct_assembly.oligomeric_count 38 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 22 UA N N ? 22 YA N N ? 22 FB N N ? 22 IB N N ? 22 JB N N ? 22 LB N N ? 22 PB N N ? 22 ZB N N ? 22 DC N N ? 22 MC N N ? 22 NC N N ? 22 TC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 30 E CYS 30 1_555 D SG CYS 48 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 P SG CYS 24 Q CYS 24 1_555 P SG CYS 56 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 W SG CYS 30 e CYS 30 1_555 W SG CYS 48 e CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 IA SG CYS 24 q CYS 24 1_555 IA SG CYS 56 q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C35 H69 O8 P' _chem_comp.formula_weight 648.891 _chem_comp.id LPP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O2 LPP sing 529 n n P1 O3 LPP doub 530 n n P1 O4 LPP sing 531 n n P1 O5 LPP sing 532 n n O2 HO2 LPP sing 533 n n O4 HO4 LPP sing 534 n n O5 C6 LPP sing 535 n n C6 C7 LPP sing 536 n n C6 HC61 LPP sing 537 n n C6 HC62 LPP sing 538 n n C7 C8 LPP sing 539 n n C7 O9 LPP sing 540 n n C7 HC7 LPP sing 541 n n C8 O27 LPP sing 542 n n C8 HC81 LPP sing 543 n n C8 HC82 LPP sing 544 n n O9 C11 LPP sing 545 n n O27 C29 LPP sing 546 n n C11 O10 LPP doub 547 n n C11 C12 LPP sing 548 n n C12 C13 LPP sing 549 n n C12 H121 LPP sing 550 n n C12 H122 LPP sing 551 n n C13 C14 LPP sing 552 n n C13 H131 LPP sing 553 n n C13 H132 LPP sing 554 n n C14 C15 LPP sing 555 n n C14 H141 LPP sing 556 n n C14 H142 LPP sing 557 n n C15 C16 LPP sing 558 n n C15 H151 LPP sing 559 n n C15 H152 LPP sing 560 n n C16 C17 LPP sing 561 n n C16 H161 LPP sing 562 n n C16 H162 LPP sing 563 n n C17 C18 LPP sing 564 n n C17 H171 LPP sing 565 n n C17 H172 LPP sing 566 n n C18 C19 LPP sing 567 n n C18 H181 LPP sing 568 n n C18 H182 LPP sing 569 n n C19 C20 LPP sing 570 n n C19 H191 LPP sing 571 n n C19 H192 LPP sing 572 n n C20 C21 LPP sing 573 n n C20 H201 LPP sing 574 n n C20 H202 LPP sing 575 n n C21 C22 LPP sing 576 n n C21 H211 LPP sing 577 n n C21 H212 LPP sing 578 n n C22 C23 LPP sing 579 n n C22 H221 LPP sing 580 n n C22 H222 LPP sing 581 n n C23 C24 LPP sing 582 n n C23 H231 LPP sing 583 n n C23 H232 LPP sing 584 n n C24 C25 LPP sing 585 n n C24 H241 LPP sing 586 n n C24 H242 LPP sing 587 n n C25 C26 LPP sing 588 n n C25 H251 LPP sing 589 n n C25 H252 LPP sing 590 n n C26 H261 LPP sing 591 n n C26 H262 LPP sing 592 n n C26 H263 LPP sing 593 n n C29 O28 LPP doub 594 n n C29 C30 LPP sing 595 n n C30 C31 LPP sing 596 n n C30 H301 LPP sing 597 n n C30 H302 LPP sing 598 n n C31 C32 LPP sing 599 n n C31 H311 LPP sing 600 n n C31 H312 LPP sing 601 n n C32 C33 LPP sing 602 n n C32 H321 LPP sing 603 n n C32 H322 LPP sing 604 n n C33 C34 LPP sing 605 n n C33 H331 LPP sing 606 n n C33 H332 LPP sing 607 n n C34 C35 LPP sing 608 n n C34 H341 LPP sing 609 n n C34 H342 LPP sing 610 n n C35 C36 LPP sing 611 n n C35 H351 LPP sing 612 n n C35 H352 LPP sing 613 n n C36 C37 LPP sing 614 n n C36 H361 LPP sing 615 n n C36 H362 LPP sing 616 n n C37 C38 LPP sing 617 n n C37 H371 LPP sing 618 n n C37 H372 LPP sing 619 n n C38 C39 LPP sing 620 n n C38 H381 LPP sing 621 n n C38 H382 LPP sing 622 n n C39 C40 LPP sing 623 n n C39 H391 LPP sing 624 n n C39 H392 LPP sing 625 n n C40 C41 LPP sing 626 n n C40 H401 LPP sing 627 n n C40 H402 LPP sing 628 n n C41 C42 LPP sing 629 n n C41 H411 LPP sing 630 n n C41 H412 LPP sing 631 n n C42 C43 LPP sing 632 n n C42 H421 LPP sing 633 n n C42 H422 LPP sing 634 n n C43 C44 LPP sing 635 n n C43 H431 LPP sing 636 n n C43 H432 LPP sing 637 n n C44 H441 LPP sing 638 n n C44 H442 LPP sing 639 n n C44 H443 LPP sing 640 n n # _atom_sites.entry_id 6TDV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code MA 20 CDL A 1 501 4 CDL CDL . NA 20 CDL A 1 502 5 CDL CDL . OA 20 CDL A 1 503 6 CDL CDL . PA 20 CDL A 1 504 7 CDL CDL . QA 20 CDL D 1 201 3 CDL CDL . RA 20 CDL D 1 202 10 CDL CDL . SA 21 LMT D 1 203 2 LMT LMT . TA 20 CDL E 1 101 9 CDL CDL . UA 22 LPP F 1 301 5 LPP LPP . VA 21 LMT F 1 302 1 LMT LMT . WA 23 TRT G 1 201 2 TRT TRT . XA 23 TRT G 1 202 4 TRT TRT . YA 22 LPP I 1 101 2 LPP LPP . ZA 23 TRT M 1 201 5 TRT TRT . AB 23 TRT M 1 202 8 TRT TRT . BB 20 CDL M 1 203 11 CDL CDL . CB 20 CDL M 1 204 12 CDL CDL . DB 23 TRT N 1 201 6 TRT TRT . EB 23 TRT N 1 202 7 TRT TRT . FB 22 LPP N 1 203 4 LPP LPP . GB 21 LMT N 1 204 3 LMT LMT . HB 20 CDL O 1 201 8 CDL CDL . IB 22 LPP O 1 202 1 LPP LPP . JB 22 LPP O 1 203 3 LPP LPP . KB 20 CDL P 1 201 1 CDL CDL . LB 22 LPP P 1 202 4 LPP LPP . MB 23 TRT P 1 203 1 TRT TRT . NB 21 LMT Q 1 101 4 LMT LMT . OB 20 CDL R 1 101 2 CDL CDL . PB 22 LPP R 1 102 6 LPP LPP . QB 23 TRT R 1 103 3 TRT TRT . RB 20 CDL a 1 501 4 CDL CDL . SB 20 CDL a 1 502 5 CDL CDL . TB 20 CDL a 1 503 6 CDL CDL . UB 20 CDL a 1 504 7 CDL CDL . VB 20 CDL d 1 201 3 CDL CDL . WB 20 CDL d 1 202 10 CDL CDL . XB 21 LMT d 1 203 2 LMT LMT . YB 20 CDL e 1 101 9 CDL CDL . ZB 22 LPP f 1 301 5 LPP LPP . AC 21 LMT f 1 302 1 LMT LMT . BC 23 TRT g 1 201 2 TRT TRT . CC 23 TRT g 1 202 4 TRT TRT . DC 22 LPP i 1 101 2 LPP LPP . EC 20 CDL m 1 201 11 CDL CDL . FC 20 CDL m 1 202 12 CDL CDL . GC 23 TRT m 1 203 5 TRT TRT . HC 23 TRT m 1 204 8 TRT TRT . IC 21 LMT n 1 201 3 LMT LMT . JC 23 TRT n 1 202 6 TRT TRT . KC 23 TRT n 1 203 7 TRT TRT . LC 20 CDL o 1 201 8 CDL CDL . MC 22 LPP o 1 202 1 LPP LPP . NC 22 LPP o 1 203 3 LPP LPP . OC 20 CDL p 1 201 13 CDL CDL . PC 20 CDL p 1 202 1 CDL CDL . QC 23 TRT p 1 203 1 TRT TRT . RC 21 LMT q 1 101 4 LMT LMT . SC 20 CDL r 1 101 2 CDL CDL . TC 22 LPP r 1 102 6 LPP LPP . UC 23 TRT r 1 103 3 TRT TRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LPP . . . PB 22 306.6 235.703 190.239 1 54.92 ? P1 LPP 102 R 1 HETATM 2 O O2 LPP . . . PB 22 305.144 235.64 190.633 1 54.92 ? O2 LPP 102 R 1 HETATM 3 O O3 LPP . . . PB 22 307.054 237.139 190.193 1 54.92 ? O3 LPP 102 R 1 HETATM 4 O O4 LPP . . . PB 22 307.431 234.94 191.248 1 54.92 ? O4 LPP 102 R 1 HETATM 5 O O5 LPP . . . PB 22 306.799 235.015 188.742 1 54.92 ? O5 LPP 102 R 1 HETATM 6 C C6 LPP . . . PB 22 306.84 233.608 188.666 1 54.92 ? C6 LPP 102 R 1 HETATM 7 C C7 LPP . . . PB 22 306.264 233.151 187.328 1 54.92 ? C7 LPP 102 R 1 HETATM 8 C C8 LPP . . . PB 22 307.357 233.247 186.27 1 54.92 ? C8 LPP 102 R 1 HETATM 9 O O9 LPP . . . PB 22 305.808 231.82 187.42 1 54.92 ? O9 LPP 102 R 1 HETATM 10 O O27 LPP . . . PB 22 307.886 234.55 186.28 1 54.92 ? O27 LPP 102 R 1 HETATM 11 C C11 LPP . . . PB 22 304.475 231.636 186.94 1 54.92 ? C11 LPP 102 R 1 HETATM 12 O O10 LPP . . . PB 22 303.612 231.335 187.695 1 54.92 ? O10 LPP 102 R 1 HETATM 13 C C12 LPP . . . PB 22 304.146 231.832 185.426 1 54.92 ? C12 LPP 102 R 1 HETATM 14 C C13 LPP . . . PB 22 305.133 231.039 184.559 1 54.92 ? C13 LPP 102 R 1 HETATM 15 C C14 LPP . . . PB 22 304.482 229.708 184.115 1 54.92 ? C14 LPP 102 R 1 HETATM 16 C C15 LPP . . . PB 22 305.52 228.827 183.435 1 54.92 ? C15 LPP 102 R 1 HETATM 17 C C29 LPP . . . PB 22 308.729 234.827 185.185 1 54.92 ? C29 LPP 102 R 1 HETATM 18 O O28 LPP . . . PB 22 308.329 235.489 184.284 1 54.92 ? O28 LPP 102 R 1 HETATM 19 C C30 LPP . . . PB 22 310.167 234.268 185.168 1 54.92 ? C30 LPP 102 R 1 HETATM 20 C C31 LPP . . . PB 22 310.742 234.355 183.738 1 54.92 ? C31 LPP 102 R 1 HETATM 21 C C32 LPP . . . PB 22 309.927 233.426 182.8 1 54.92 ? C32 LPP 102 R 1 HETATM 22 C C33 LPP . . . PB 22 309.263 234.271 181.676 1 54.92 ? C33 LPP 102 R 1 HETATM 23 C C34 LPP . . . PB 22 308.055 233.498 181.089 1 54.92 ? C34 LPP 102 R 1 HETATM 24 C C35 LPP . . . PB 22 306.779 234.37 181.213 1 54.92 ? C35 LPP 102 R 1 HETATM 25 C C36 LPP . . . PB 22 305.536 233.532 180.822 1 54.92 ? C36 LPP 102 R 1 HETATM 26 C C37 LPP . . . PB 22 304.677 234.323 179.804 1 54.92 ? C37 LPP 102 R 1 HETATM 27 C C38 LPP . . . PB 22 304.019 233.338 178.802 1 54.92 ? C38 LPP 102 R 1 HETATM 28 C C39 LPP . . . PB 22 304.204 233.854 177.354 1 54.92 ? C39 LPP 102 R 1 HETATM 29 C C40 LPP . . . PB 22 305.26 234.986 177.326 1 54.92 ? C40 LPP 102 R 1 HETATM 30 C C41 LPP . . . PB 22 306.663 234.39 177.102 1 54.92 ? C41 LPP 102 R 1 HETATM 31 C C42 LPP . . . PB 22 307.474 235.326 176.193 1 54.92 ? C42 LPP 102 R 1 HETATM 32 H HC61 LPP . . . PB 22 306.317 233.233 189.39 1 54.92 ? HC61 LPP 102 R 1 HETATM 33 H HC62 LPP . . . PB 22 307.758 233.31 188.74 1 54.92 ? HC62 LPP 102 R 1 HETATM 34 H HC7 LPP . . . PB 22 305.526 233.728 187.081 1 54.92 ? HC7 LPP 102 R 1 HETATM 35 H HC81 LPP . . . PB 22 308.062 232.607 186.456 1 54.92 ? HC81 LPP 102 R 1 HETATM 36 H HC82 LPP . . . PB 22 306.977 233.062 185.398 1 54.92 ? HC82 LPP 102 R 1 HETATM 37 H H121 LPP . . . PB 22 304.207 232.773 185.203 1 54.92 ? H121 LPP 102 R 1 HETATM 38 H H122 LPP . . . PB 22 303.245 231.519 185.253 1 54.92 ? H122 LPP 102 R 1 HETATM 39 H H131 LPP . . . PB 22 305.933 230.851 185.071 1 54.92 ? H131 LPP 102 R 1 HETATM 40 H H132 LPP . . . PB 22 305.366 231.562 183.776 1 54.92 ? H132 LPP 102 R 1 HETATM 41 H H141 LPP . . . PB 22 303.761 229.892 183.493 1 54.92 ? H141 LPP 102 R 1 HETATM 42 H H142 LPP . . . PB 22 304.13 229.248 184.892 1 54.92 ? H142 LPP 102 R 1 HETATM 43 H H151 LPP . . . PB 22 306 229.346 182.769 1 54.92 ? H151 LPP 102 R 1 HETATM 44 H H152 LPP . . . PB 22 306.144 228.49 184.096 1 54.92 ? H152 LPP 102 R 1 HETATM 45 H H301 LPP . . . PB 22 310.721 234.786 185.771 1 54.92 ? H301 LPP 102 R 1 HETATM 46 H H302 LPP . . . PB 22 310.155 233.343 185.456 1 54.92 ? H302 LPP 102 R 1 HETATM 47 H H311 LPP . . . PB 22 310.688 235.269 183.421 1 54.92 ? H311 LPP 102 R 1 HETATM 48 H H312 LPP . . . PB 22 311.67 234.072 183.749 1 54.92 ? H312 LPP 102 R 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 128 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #