data_6TDV # _model_server_result.job_id OUEaw6lPIuanW4_X9bJeFQ _model_server_result.datetime_utc '2024-12-26 13:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EB","auth_seq_id":202}' # _entry.id 6TDV # _exptl.entry_id 6TDV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 352.508 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FRAGMENT OF TRITON X-100' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 38-meric _pdbx_struct_assembly.oligomeric_count 38 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 23 WA N N ? 23 XA N N ? 23 ZA N N ? 23 AB N N ? 23 DB N N ? 23 EB N N ? 23 MB N N ? 23 QB N N ? 23 BC N N ? 23 CC N N ? 23 GC N N ? 23 HC N N ? 23 JC N N ? 23 KC N N ? 23 QC N N ? 23 UC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 30 E CYS 30 1_555 D SG CYS 48 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 P SG CYS 24 Q CYS 24 1_555 P SG CYS 56 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 W SG CYS 30 e CYS 30 1_555 W SG CYS 48 e CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 IA SG CYS 24 q CYS 24 1_555 IA SG CYS 56 q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C21 H36 O4' _chem_comp.formula_weight 352.508 _chem_comp.id TRT _chem_comp.mon_nstd_flag . _chem_comp.name 'FRAGMENT OF TRITON X-100' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O24 TRT sing 781 n n C25 H251 TRT sing 782 n n C25 H252 TRT sing 783 n n C25 H253 TRT sing 784 n n O24 C23 TRT sing 785 n n C23 C22 TRT sing 786 n n C23 H231 TRT sing 787 n n C23 H232 TRT sing 788 n n C22 O21 TRT sing 789 n n C22 H221 TRT sing 790 n n C22 H222 TRT sing 791 n n O21 C20 TRT sing 792 n n C20 C19 TRT sing 793 n n C20 H201 TRT sing 794 n n C20 H202 TRT sing 795 n n C19 O18 TRT sing 796 n n C19 H191 TRT sing 797 n n C19 H192 TRT sing 798 n n O18 C17 TRT sing 799 n n C17 C16 TRT sing 800 n n C17 H171 TRT sing 801 n n C17 H172 TRT sing 802 n n C16 O15 TRT sing 803 n n C16 H161 TRT sing 804 n n C16 H162 TRT sing 805 n n O15 C12 TRT sing 806 n n C12 C13 TRT doub 807 n y C12 C11 TRT sing 808 n y C13 C14 TRT sing 809 n y C13 H13 TRT sing 810 n n C14 C9 TRT doub 811 n y C14 H14 TRT sing 812 n n C11 C10 TRT doub 813 n y C11 H11 TRT sing 814 n n C10 C9 TRT sing 815 n y C10 H10 TRT sing 816 n n C9 C6 TRT sing 817 n n C6 C8 TRT sing 818 n n C6 C7 TRT sing 819 n n C6 C5 TRT sing 820 n n C8 H8C1 TRT sing 821 n n C8 H8C2 TRT sing 822 n n C8 H8C3 TRT sing 823 n n C7 H7C1 TRT sing 824 n n C7 H7C2 TRT sing 825 n n C7 H7C3 TRT sing 826 n n C5 C1 TRT sing 827 n n C5 H5C1 TRT sing 828 n n C5 H5C2 TRT sing 829 n n C1 C2 TRT sing 830 n n C1 C4 TRT sing 831 n n C1 C3 TRT sing 832 n n C2 H2C1 TRT sing 833 n n C2 H2C2 TRT sing 834 n n C2 H2C3 TRT sing 835 n n C4 H4C1 TRT sing 836 n n C4 H4C2 TRT sing 837 n n C4 H4C3 TRT sing 838 n n C3 H3C1 TRT sing 839 n n C3 H3C2 TRT sing 840 n n C3 H3C3 TRT sing 841 n n # _atom_sites.entry_id 6TDV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code MA 20 CDL A 1 501 4 CDL CDL . NA 20 CDL A 1 502 5 CDL CDL . OA 20 CDL A 1 503 6 CDL CDL . PA 20 CDL A 1 504 7 CDL CDL . QA 20 CDL D 1 201 3 CDL CDL . RA 20 CDL D 1 202 10 CDL CDL . SA 21 LMT D 1 203 2 LMT LMT . TA 20 CDL E 1 101 9 CDL CDL . UA 22 LPP F 1 301 5 LPP LPP . VA 21 LMT F 1 302 1 LMT LMT . WA 23 TRT G 1 201 2 TRT TRT . XA 23 TRT G 1 202 4 TRT TRT . YA 22 LPP I 1 101 2 LPP LPP . ZA 23 TRT M 1 201 5 TRT TRT . AB 23 TRT M 1 202 8 TRT TRT . BB 20 CDL M 1 203 11 CDL CDL . CB 20 CDL M 1 204 12 CDL CDL . DB 23 TRT N 1 201 6 TRT TRT . EB 23 TRT N 1 202 7 TRT TRT . FB 22 LPP N 1 203 4 LPP LPP . GB 21 LMT N 1 204 3 LMT LMT . HB 20 CDL O 1 201 8 CDL CDL . IB 22 LPP O 1 202 1 LPP LPP . JB 22 LPP O 1 203 3 LPP LPP . KB 20 CDL P 1 201 1 CDL CDL . LB 22 LPP P 1 202 4 LPP LPP . MB 23 TRT P 1 203 1 TRT TRT . NB 21 LMT Q 1 101 4 LMT LMT . OB 20 CDL R 1 101 2 CDL CDL . PB 22 LPP R 1 102 6 LPP LPP . QB 23 TRT R 1 103 3 TRT TRT . RB 20 CDL a 1 501 4 CDL CDL . SB 20 CDL a 1 502 5 CDL CDL . TB 20 CDL a 1 503 6 CDL CDL . UB 20 CDL a 1 504 7 CDL CDL . VB 20 CDL d 1 201 3 CDL CDL . WB 20 CDL d 1 202 10 CDL CDL . XB 21 LMT d 1 203 2 LMT LMT . YB 20 CDL e 1 101 9 CDL CDL . ZB 22 LPP f 1 301 5 LPP LPP . AC 21 LMT f 1 302 1 LMT LMT . BC 23 TRT g 1 201 2 TRT TRT . CC 23 TRT g 1 202 4 TRT TRT . DC 22 LPP i 1 101 2 LPP LPP . EC 20 CDL m 1 201 11 CDL CDL . FC 20 CDL m 1 202 12 CDL CDL . GC 23 TRT m 1 203 5 TRT TRT . HC 23 TRT m 1 204 8 TRT TRT . IC 21 LMT n 1 201 3 LMT LMT . JC 23 TRT n 1 202 6 TRT TRT . KC 23 TRT n 1 203 7 TRT TRT . LC 20 CDL o 1 201 8 CDL CDL . MC 22 LPP o 1 202 1 LPP LPP . NC 22 LPP o 1 203 3 LPP LPP . OC 20 CDL p 1 201 13 CDL CDL . PC 20 CDL p 1 202 1 CDL CDL . QC 23 TRT p 1 203 1 TRT TRT . RC 21 LMT q 1 101 4 LMT LMT . SC 20 CDL r 1 101 2 CDL CDL . TC 22 LPP r 1 102 6 LPP LPP . UC 23 TRT r 1 103 3 TRT TRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 TRT . . . EB 23 215.488 202.353 216.795 1 48.33 ? C25 TRT 202 N 1 HETATM 2 O O24 TRT . . . EB 23 215.038 202.616 218.096 1 48.33 ? O24 TRT 202 N 1 HETATM 3 C C23 TRT . . . EB 23 215.035 201.505 218.944 1 48.33 ? C23 TRT 202 N 1 HETATM 4 C C22 TRT . . . EB 23 213.705 201.43 219.687 1 48.33 ? C22 TRT 202 N 1 HETATM 5 O O21 TRT . . . EB 23 213.755 200.374 220.607 1 48.33 ? O21 TRT 202 N 1 HETATM 6 C C20 TRT . . . EB 23 214.219 200.731 221.881 1 48.33 ? C20 TRT 202 N 1 HETATM 7 C C19 TRT . . . EB 23 214.732 199.486 222.602 1 48.33 ? C19 TRT 202 N 1 HETATM 8 O O18 TRT . . . EB 23 214.493 199.605 223.978 1 48.33 ? O18 TRT 202 N 1 HETATM 9 C C17 TRT . . . EB 23 214.923 198.508 224.737 1 48.33 ? C17 TRT 202 N 1 HETATM 10 C C16 TRT . . . EB 23 215.775 199.009 225.905 1 48.33 ? C16 TRT 202 N 1 HETATM 11 O O15 TRT . . . EB 23 216.148 197.927 226.715 1 48.33 ? O15 TRT 202 N 1 HETATM 12 C C12 TRT . . . EB 23 216.467 198.271 228.038 1 48.33 ? C12 TRT 202 N 1 HETATM 13 C C13 TRT . . . EB 23 215.904 197.577 229.088 1 48.33 ? C13 TRT 202 N 1 HETATM 14 C C14 TRT . . . EB 23 216.218 197.914 230.395 1 48.33 ? C14 TRT 202 N 1 HETATM 15 C C11 TRT . . . EB 23 217.345 199.303 228.308 1 48.33 ? C11 TRT 202 N 1 HETATM 16 C C10 TRT . . . EB 23 217.657 199.636 229.615 1 48.33 ? C10 TRT 202 N 1 HETATM 17 C C9 TRT . . . EB 23 217.092 198.956 230.694 1 48.33 ? C9 TRT 202 N 1 HETATM 18 C C6 TRT . . . EB 23 217.438 199.309 232.174 1 48.33 ? C6 TRT 202 N 1 HETATM 19 C C8 TRT . . . EB 23 216.214 199.06 233.079 1 48.33 ? C8 TRT 202 N 1 HETATM 20 C C7 TRT . . . EB 23 218.536 198.318 232.584 1 48.33 ? C7 TRT 202 N 1 HETATM 21 C C5 TRT . . . EB 23 217.943 200.781 232.275 1 48.33 ? C5 TRT 202 N 1 HETATM 22 C C1 TRT . . . EB 23 218.108 201.506 233.64 1 48.33 ? C1 TRT 202 N 1 HETATM 23 C C2 TRT . . . EB 23 218.858 200.693 234.697 1 48.33 ? C2 TRT 202 N 1 HETATM 24 C C4 TRT . . . EB 23 218.975 202.736 233.357 1 48.33 ? C4 TRT 202 N 1 HETATM 25 C C3 TRT . . . EB 23 216.782 202.04 234.203 1 48.33 ? C3 TRT 202 N 1 HETATM 26 H H251 TRT . . . EB 23 216.371 201.953 216.831 1 48.33 ? H251 TRT 202 N 1 HETATM 27 H H252 TRT . . . EB 23 215.532 203.185 216.297 1 48.33 ? H252 TRT 202 N 1 HETATM 28 H H253 TRT . . . EB 23 214.873 201.745 216.353 1 48.33 ? H253 TRT 202 N 1 HETATM 29 H H231 TRT . . . EB 23 215.158 200.694 218.426 1 48.33 ? H231 TRT 202 N 1 HETATM 30 H H232 TRT . . . EB 23 215.755 201.589 219.588 1 48.33 ? H232 TRT 202 N 1 HETATM 31 H H221 TRT . . . EB 23 213.549 202.265 220.153 1 48.33 ? H221 TRT 202 N 1 HETATM 32 H H222 TRT . . . EB 23 212.99 201.275 219.05 1 48.33 ? H222 TRT 202 N 1 HETATM 33 H H201 TRT . . . EB 23 214.94 201.371 221.797 1 48.33 ? H201 TRT 202 N 1 HETATM 34 H H202 TRT . . . EB 23 213.495 201.123 222.391 1 48.33 ? H202 TRT 202 N 1 HETATM 35 H H191 TRT . . . EB 23 214.272 198.704 222.263 1 48.33 ? H191 TRT 202 N 1 HETATM 36 H H192 TRT . . . EB 23 215.683 199.4 222.443 1 48.33 ? H192 TRT 202 N 1 HETATM 37 H H171 TRT . . . EB 23 214.152 198.031 225.08 1 48.33 ? H171 TRT 202 N 1 HETATM 38 H H172 TRT . . . EB 23 215.452 197.912 224.186 1 48.33 ? H172 TRT 202 N 1 HETATM 39 H H161 TRT . . . EB 23 216.567 199.447 225.562 1 48.33 ? H161 TRT 202 N 1 HETATM 40 H H162 TRT . . . EB 23 215.257 199.64 226.425 1 48.33 ? H162 TRT 202 N 1 HETATM 41 H H13 TRT . . . EB 23 215.313 196.88 228.917 1 48.33 ? H13 TRT 202 N 1 HETATM 42 H H14 TRT . . . EB 23 215.826 197.431 231.084 1 48.33 ? H14 TRT 202 N 1 HETATM 43 H H11 TRT . . . EB 23 217.727 199.777 227.607 1 48.33 ? H11 TRT 202 N 1 HETATM 44 H H10 TRT . . . EB 23 218.248 200.336 229.765 1 48.33 ? H10 TRT 202 N 1 HETATM 45 H H8C1 TRT . . . EB 23 216.395 199.348 233.981 1 48.33 ? H8C1 TRT 202 N 1 HETATM 46 H H8C2 TRT . . . EB 23 216.001 198.115 233.125 1 48.33 ? H8C2 TRT 202 N 1 HETATM 47 H H8C3 TRT . . . EB 23 215.453 199.552 232.734 1 48.33 ? H8C3 TRT 202 N 1 HETATM 48 H H7C1 TRT . . . EB 23 218.491 198.165 233.54 1 48.33 ? H7C1 TRT 202 N 1 HETATM 49 H H7C2 TRT . . . EB 23 219.407 198.675 232.357 1 48.33 ? H7C2 TRT 202 N 1 HETATM 50 H H7C3 TRT . . . EB 23 218.409 197.475 232.122 1 48.33 ? H7C3 TRT 202 N 1 HETATM 51 H H5C1 TRT . . . EB 23 217.335 201.331 231.766 1 48.33 ? H5C1 TRT 202 N 1 HETATM 52 H H5C2 TRT . . . EB 23 218.809 200.825 231.842 1 48.33 ? H5C2 TRT 202 N 1 HETATM 53 H H2C1 TRT . . . EB 23 219.638 200.285 234.292 1 48.33 ? H2C1 TRT 202 N 1 HETATM 54 H H2C2 TRT . . . EB 23 218.288 200 235.059 1 48.33 ? H2C2 TRT 202 N 1 HETATM 55 H H2C3 TRT . . . EB 23 219.139 201.28 235.415 1 48.33 ? H2C3 TRT 202 N 1 HETATM 56 H H4C1 TRT . . . EB 23 218.554 203.276 232.67 1 48.33 ? H4C1 TRT 202 N 1 HETATM 57 H H4C2 TRT . . . EB 23 219.075 203.263 234.165 1 48.33 ? H4C2 TRT 202 N 1 HETATM 58 H H4C3 TRT . . . EB 23 219.853 202.458 233.055 1 48.33 ? H4C3 TRT 202 N 1 HETATM 59 H H3C1 TRT . . . EB 23 216.807 203.008 234.254 1 48.33 ? H3C1 TRT 202 N 1 HETATM 60 H H3C2 TRT . . . EB 23 216.045 201.778 233.631 1 48.33 ? H3C2 TRT 202 N 1 HETATM 61 H H3C3 TRT . . . EB 23 216.639 201.679 235.091 1 48.33 ? H3C3 TRT 202 N 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 127 _model_server_stats.create_model_time_ms 446 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 61 #