data_6TDV # _model_server_result.job_id h02x-YMLyBDWFnBXHdMdwg _model_server_result.datetime_utc '2024-12-26 13:07:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MB","auth_seq_id":203}' # _entry.id 6TDV # _exptl.entry_id 6TDV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 352.508 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FRAGMENT OF TRITON X-100' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 38-meric _pdbx_struct_assembly.oligomeric_count 38 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 23 WA N N ? 23 XA N N ? 23 ZA N N ? 23 AB N N ? 23 DB N N ? 23 EB N N ? 23 MB N N ? 23 QB N N ? 23 BC N N ? 23 CC N N ? 23 GC N N ? 23 HC N N ? 23 JC N N ? 23 KC N N ? 23 QC N N ? 23 UC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 30 E CYS 30 1_555 D SG CYS 48 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 P SG CYS 24 Q CYS 24 1_555 P SG CYS 56 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 W SG CYS 30 e CYS 30 1_555 W SG CYS 48 e CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 IA SG CYS 24 q CYS 24 1_555 IA SG CYS 56 q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C21 H36 O4' _chem_comp.formula_weight 352.508 _chem_comp.id TRT _chem_comp.mon_nstd_flag . _chem_comp.name 'FRAGMENT OF TRITON X-100' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O24 TRT sing 781 n n C25 H251 TRT sing 782 n n C25 H252 TRT sing 783 n n C25 H253 TRT sing 784 n n O24 C23 TRT sing 785 n n C23 C22 TRT sing 786 n n C23 H231 TRT sing 787 n n C23 H232 TRT sing 788 n n C22 O21 TRT sing 789 n n C22 H221 TRT sing 790 n n C22 H222 TRT sing 791 n n O21 C20 TRT sing 792 n n C20 C19 TRT sing 793 n n C20 H201 TRT sing 794 n n C20 H202 TRT sing 795 n n C19 O18 TRT sing 796 n n C19 H191 TRT sing 797 n n C19 H192 TRT sing 798 n n O18 C17 TRT sing 799 n n C17 C16 TRT sing 800 n n C17 H171 TRT sing 801 n n C17 H172 TRT sing 802 n n C16 O15 TRT sing 803 n n C16 H161 TRT sing 804 n n C16 H162 TRT sing 805 n n O15 C12 TRT sing 806 n n C12 C13 TRT doub 807 n y C12 C11 TRT sing 808 n y C13 C14 TRT sing 809 n y C13 H13 TRT sing 810 n n C14 C9 TRT doub 811 n y C14 H14 TRT sing 812 n n C11 C10 TRT doub 813 n y C11 H11 TRT sing 814 n n C10 C9 TRT sing 815 n y C10 H10 TRT sing 816 n n C9 C6 TRT sing 817 n n C6 C8 TRT sing 818 n n C6 C7 TRT sing 819 n n C6 C5 TRT sing 820 n n C8 H8C1 TRT sing 821 n n C8 H8C2 TRT sing 822 n n C8 H8C3 TRT sing 823 n n C7 H7C1 TRT sing 824 n n C7 H7C2 TRT sing 825 n n C7 H7C3 TRT sing 826 n n C5 C1 TRT sing 827 n n C5 H5C1 TRT sing 828 n n C5 H5C2 TRT sing 829 n n C1 C2 TRT sing 830 n n C1 C4 TRT sing 831 n n C1 C3 TRT sing 832 n n C2 H2C1 TRT sing 833 n n C2 H2C2 TRT sing 834 n n C2 H2C3 TRT sing 835 n n C4 H4C1 TRT sing 836 n n C4 H4C2 TRT sing 837 n n C4 H4C3 TRT sing 838 n n C3 H3C1 TRT sing 839 n n C3 H3C2 TRT sing 840 n n C3 H3C3 TRT sing 841 n n # _atom_sites.entry_id 6TDV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code MA 20 CDL A 1 501 4 CDL CDL . NA 20 CDL A 1 502 5 CDL CDL . OA 20 CDL A 1 503 6 CDL CDL . PA 20 CDL A 1 504 7 CDL CDL . QA 20 CDL D 1 201 3 CDL CDL . RA 20 CDL D 1 202 10 CDL CDL . SA 21 LMT D 1 203 2 LMT LMT . TA 20 CDL E 1 101 9 CDL CDL . UA 22 LPP F 1 301 5 LPP LPP . VA 21 LMT F 1 302 1 LMT LMT . WA 23 TRT G 1 201 2 TRT TRT . XA 23 TRT G 1 202 4 TRT TRT . YA 22 LPP I 1 101 2 LPP LPP . ZA 23 TRT M 1 201 5 TRT TRT . AB 23 TRT M 1 202 8 TRT TRT . BB 20 CDL M 1 203 11 CDL CDL . CB 20 CDL M 1 204 12 CDL CDL . DB 23 TRT N 1 201 6 TRT TRT . EB 23 TRT N 1 202 7 TRT TRT . FB 22 LPP N 1 203 4 LPP LPP . GB 21 LMT N 1 204 3 LMT LMT . HB 20 CDL O 1 201 8 CDL CDL . IB 22 LPP O 1 202 1 LPP LPP . JB 22 LPP O 1 203 3 LPP LPP . KB 20 CDL P 1 201 1 CDL CDL . LB 22 LPP P 1 202 4 LPP LPP . MB 23 TRT P 1 203 1 TRT TRT . NB 21 LMT Q 1 101 4 LMT LMT . OB 20 CDL R 1 101 2 CDL CDL . PB 22 LPP R 1 102 6 LPP LPP . QB 23 TRT R 1 103 3 TRT TRT . RB 20 CDL a 1 501 4 CDL CDL . SB 20 CDL a 1 502 5 CDL CDL . TB 20 CDL a 1 503 6 CDL CDL . UB 20 CDL a 1 504 7 CDL CDL . VB 20 CDL d 1 201 3 CDL CDL . WB 20 CDL d 1 202 10 CDL CDL . XB 21 LMT d 1 203 2 LMT LMT . YB 20 CDL e 1 101 9 CDL CDL . ZB 22 LPP f 1 301 5 LPP LPP . AC 21 LMT f 1 302 1 LMT LMT . BC 23 TRT g 1 201 2 TRT TRT . CC 23 TRT g 1 202 4 TRT TRT . DC 22 LPP i 1 101 2 LPP LPP . EC 20 CDL m 1 201 11 CDL CDL . FC 20 CDL m 1 202 12 CDL CDL . GC 23 TRT m 1 203 5 TRT TRT . HC 23 TRT m 1 204 8 TRT TRT . IC 21 LMT n 1 201 3 LMT LMT . JC 23 TRT n 1 202 6 TRT TRT . KC 23 TRT n 1 203 7 TRT TRT . LC 20 CDL o 1 201 8 CDL CDL . MC 22 LPP o 1 202 1 LPP LPP . NC 22 LPP o 1 203 3 LPP LPP . OC 20 CDL p 1 201 13 CDL CDL . PC 20 CDL p 1 202 1 CDL CDL . QC 23 TRT p 1 203 1 TRT TRT . RC 21 LMT q 1 101 4 LMT LMT . SC 20 CDL r 1 101 2 CDL CDL . TC 22 LPP r 1 102 6 LPP LPP . UC 23 TRT r 1 103 3 TRT TRT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C25 TRT . . . MB 23 269.061 234.952 222.674 1 36.27 ? C25 TRT 203 P 1 HETATM 2 O O24 TRT . . . MB 23 269.316 233.619 223.019 1 36.27 ? O24 TRT 203 P 1 HETATM 3 C C23 TRT . . . MB 23 268.206 232.91 223.488 1 36.27 ? C23 TRT 203 P 1 HETATM 4 C C22 TRT . . . MB 23 267.918 231.746 222.546 1 36.27 ? C22 TRT 203 P 1 HETATM 5 O O21 TRT . . . MB 23 267.608 230.589 223.271 1 36.27 ? O21 TRT 203 P 1 HETATM 6 C C20 TRT . . . MB 23 266.732 229.744 222.578 1 36.27 ? C20 TRT 203 P 1 HETATM 7 C C19 TRT . . . MB 23 266.677 228.362 223.222 1 36.27 ? C19 TRT 203 P 1 HETATM 8 O O18 TRT . . . MB 23 265.771 227.567 222.504 1 36.27 ? O18 TRT 203 P 1 HETATM 9 C C17 TRT . . . MB 23 265.609 226.262 222.988 1 36.27 ? C17 TRT 203 P 1 HETATM 10 C C16 TRT . . . MB 23 264.392 226.206 223.91 1 36.27 ? C16 TRT 203 P 1 HETATM 11 O O15 TRT . . . MB 23 263.562 225.139 223.542 1 36.27 ? O15 TRT 203 P 1 HETATM 12 C C12 TRT . . . MB 23 263.285 224.25 224.592 1 36.27 ? C12 TRT 203 P 1 HETATM 13 C C13 TRT . . . MB 23 263.952 223.047 224.685 1 36.27 ? C13 TRT 203 P 1 HETATM 14 C C14 TRT . . . MB 23 263.682 222.173 225.726 1 36.27 ? C14 TRT 203 P 1 HETATM 15 C C11 TRT . . . MB 23 262.343 224.576 225.546 1 36.27 ? C11 TRT 203 P 1 HETATM 16 C C10 TRT . . . MB 23 262.068 223.703 226.581 1 36.27 ? C10 TRT 203 P 1 HETATM 17 C C9 TRT . . . MB 23 262.728 222.457 226.72 1 36.27 ? C9 TRT 203 P 1 HETATM 18 C C6 TRT . . . MB 23 262.337 221.517 227.951 1 36.27 ? C6 TRT 203 P 1 HETATM 19 C C8 TRT . . . MB 23 261.535 220.742 226.811 1 36.27 ? C8 TRT 203 P 1 HETATM 20 C C7 TRT . . . MB 23 263.676 222.12 228.571 1 36.27 ? C7 TRT 203 P 1 HETATM 21 C C5 TRT . . . MB 23 262.732 220.081 228.571 1 36.27 ? C5 TRT 203 P 1 HETATM 22 C C1 TRT . . . MB 23 261.852 219.726 229.799 1 36.27 ? C1 TRT 203 P 1 HETATM 23 C C2 TRT . . . MB 23 262.761 219.524 231.011 1 36.27 ? C2 TRT 203 P 1 HETATM 24 C C4 TRT . . . MB 23 260.779 220.754 230.175 1 36.27 ? C4 TRT 203 P 1 HETATM 25 C C3 TRT . . . MB 23 261.14 218.399 229.53 1 36.27 ? C3 TRT 203 P 1 HETATM 26 H H251 TRT . . . MB 23 268.749 235.437 223.452 1 36.27 ? H251 TRT 203 P 1 HETATM 27 H H252 TRT . . . MB 23 268.386 234.985 221.98 1 36.27 ? H252 TRT 203 P 1 HETATM 28 H H253 TRT . . . MB 23 269.875 235.365 222.348 1 36.27 ? H253 TRT 203 P 1 HETATM 29 H H231 TRT . . . MB 23 267.434 233.493 223.521 1 36.27 ? H231 TRT 203 P 1 HETATM 30 H H232 TRT . . . MB 23 268.391 232.569 224.374 1 36.27 ? H232 TRT 203 P 1 HETATM 31 H H221 TRT . . . MB 23 268.698 231.581 221.997 1 36.27 ? H221 TRT 203 P 1 HETATM 32 H H222 TRT . . . MB 23 267.17 231.977 221.978 1 36.27 ? H222 TRT 203 P 1 HETATM 33 H H201 TRT . . . MB 23 267.036 229.652 221.664 1 36.27 ? H201 TRT 203 P 1 HETATM 34 H H202 TRT . . . MB 23 265.846 230.13 222.583 1 36.27 ? H202 TRT 203 P 1 HETATM 35 H H191 TRT . . . MB 23 266.385 228.44 224.141 1 36.27 ? H191 TRT 203 P 1 HETATM 36 H H192 TRT . . . MB 23 267.559 227.963 223.191 1 36.27 ? H192 TRT 203 P 1 HETATM 37 H H171 TRT . . . MB 23 266.396 225.993 223.484 1 36.27 ? H171 TRT 203 P 1 HETATM 38 H H172 TRT . . . MB 23 265.472 225.656 222.243 1 36.27 ? H172 TRT 203 P 1 HETATM 39 H H161 TRT . . . MB 23 264.681 226.096 224.827 1 36.27 ? H161 TRT 203 P 1 HETATM 40 H H162 TRT . . . MB 23 263.896 227.032 223.829 1 36.27 ? H162 TRT 203 P 1 HETATM 41 H H13 TRT . . . MB 23 264.589 222.822 224.046 1 36.27 ? H13 TRT 203 P 1 HETATM 42 H H14 TRT . . . MB 23 264.139 221.364 225.765 1 36.27 ? H14 TRT 203 P 1 HETATM 43 H H11 TRT . . . MB 23 261.89 225.384 225.491 1 36.27 ? H11 TRT 203 P 1 HETATM 44 H H10 TRT . . . MB 23 261.432 223.943 227.213 1 36.27 ? H10 TRT 203 P 1 HETATM 45 H H8C1 TRT . . . MB 23 260.859 220.203 227.249 1 36.27 ? H8C1 TRT 203 P 1 HETATM 46 H H8C2 TRT . . . MB 23 260.983 221.305 226.256 1 36.27 ? H8C2 TRT 203 P 1 HETATM 47 H H8C3 TRT . . . MB 23 262.023 220.169 226.192 1 36.27 ? H8C3 TRT 203 P 1 HETATM 48 H H7C1 TRT . . . MB 23 263.645 222 229.536 1 36.27 ? H7C1 TRT 203 P 1 HETATM 49 H H7C2 TRT . . . MB 23 263.748 223.081 228.521 1 36.27 ? H7C2 TRT 203 P 1 HETATM 50 H H7C3 TRT . . . MB 23 264.522 221.774 228.235 1 36.27 ? H7C3 TRT 203 P 1 HETATM 51 H H5C1 TRT . . . MB 23 262.676 219.311 227.993 1 36.27 ? H5C1 TRT 203 P 1 HETATM 52 H H5C2 TRT . . . MB 23 263.638 219.963 228.883 1 36.27 ? H5C2 TRT 203 P 1 HETATM 53 H H2C1 TRT . . . MB 23 263.279 220.329 231.169 1 36.27 ? H2C1 TRT 203 P 1 HETATM 54 H H2C2 TRT . . . MB 23 262.218 219.335 231.792 1 36.27 ? H2C2 TRT 203 P 1 HETATM 55 H H2C3 TRT . . . MB 23 263.361 218.778 230.852 1 36.27 ? H2C3 TRT 203 P 1 HETATM 56 H H4C1 TRT . . . MB 23 260.289 220.423 230.943 1 36.27 ? H4C1 TRT 203 P 1 HETATM 57 H H4C2 TRT . . . MB 23 260.153 220.873 229.445 1 36.27 ? H4C2 TRT 203 P 1 HETATM 58 H H4C3 TRT . . . MB 23 261.187 221.6 230.416 1 36.27 ? H4C3 TRT 203 P 1 HETATM 59 H H3C1 TRT . . . MB 23 261.795 217.695 229.403 1 36.27 ? H3C1 TRT 203 P 1 HETATM 60 H H3C2 TRT . . . MB 23 260.578 218.178 230.288 1 36.27 ? H3C2 TRT 203 P 1 HETATM 61 H H3C3 TRT . . . MB 23 260.589 218.476 228.737 1 36.27 ? H3C3 TRT 203 P 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 475 _model_server_stats.query_time_ms 444 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 61 #