data_6TDV
#
_model_server_result.job_id            p7uk-87tRvql9wppm8AqCA 
_model_server_result.datetime_utc      '2024-12-26 13:40:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tdv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"UA","auth_seq_id":301}' 
#
_entry.id    6TDV 
#
_exptl.entry_id    6TDV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              648.891 
_entity.id                          22 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TDV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    38-meric 
_pdbx_struct_assembly.oligomeric_count      38 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC,KC,LC,MC,NC,OC,PC,QC,RC,SC,TC,UC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 22 UA N N 
? 22 YA N N 
? 22 FB N N 
? 22 IB N N 
? 22 JB N N 
? 22 LB N N 
? 22 PB N N 
? 22 ZB N N 
? 22 DC N N 
? 22 MC N N 
? 22 NC N N 
? 22 TC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 30 E CYS 30 1_555 D SG CYS 48 E CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 P SG CYS 24 Q CYS 24 1_555 P SG CYS 56 Q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 W SG CYS 30 e CYS 30 1_555 W SG CYS 48 e CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 IA SG CYS 24 q CYS 24 1_555 IA SG CYS 56 q CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C35 H69 O8 P' 
_chem_comp.formula_weight    648.891 
_chem_comp.id                LPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O2 LPP sing 529 n n 
P1 O3 LPP doub 530 n n 
P1 O4 LPP sing 531 n n 
P1 O5 LPP sing 532 n n 
O2 HO2 LPP sing 533 n n 
O4 HO4 LPP sing 534 n n 
O5 C6 LPP sing 535 n n 
C6 C7 LPP sing 536 n n 
C6 HC61 LPP sing 537 n n 
C6 HC62 LPP sing 538 n n 
C7 C8 LPP sing 539 n n 
C7 O9 LPP sing 540 n n 
C7 HC7 LPP sing 541 n n 
C8 O27 LPP sing 542 n n 
C8 HC81 LPP sing 543 n n 
C8 HC82 LPP sing 544 n n 
O9 C11 LPP sing 545 n n 
O27 C29 LPP sing 546 n n 
C11 O10 LPP doub 547 n n 
C11 C12 LPP sing 548 n n 
C12 C13 LPP sing 549 n n 
C12 H121 LPP sing 550 n n 
C12 H122 LPP sing 551 n n 
C13 C14 LPP sing 552 n n 
C13 H131 LPP sing 553 n n 
C13 H132 LPP sing 554 n n 
C14 C15 LPP sing 555 n n 
C14 H141 LPP sing 556 n n 
C14 H142 LPP sing 557 n n 
C15 C16 LPP sing 558 n n 
C15 H151 LPP sing 559 n n 
C15 H152 LPP sing 560 n n 
C16 C17 LPP sing 561 n n 
C16 H161 LPP sing 562 n n 
C16 H162 LPP sing 563 n n 
C17 C18 LPP sing 564 n n 
C17 H171 LPP sing 565 n n 
C17 H172 LPP sing 566 n n 
C18 C19 LPP sing 567 n n 
C18 H181 LPP sing 568 n n 
C18 H182 LPP sing 569 n n 
C19 C20 LPP sing 570 n n 
C19 H191 LPP sing 571 n n 
C19 H192 LPP sing 572 n n 
C20 C21 LPP sing 573 n n 
C20 H201 LPP sing 574 n n 
C20 H202 LPP sing 575 n n 
C21 C22 LPP sing 576 n n 
C21 H211 LPP sing 577 n n 
C21 H212 LPP sing 578 n n 
C22 C23 LPP sing 579 n n 
C22 H221 LPP sing 580 n n 
C22 H222 LPP sing 581 n n 
C23 C24 LPP sing 582 n n 
C23 H231 LPP sing 583 n n 
C23 H232 LPP sing 584 n n 
C24 C25 LPP sing 585 n n 
C24 H241 LPP sing 586 n n 
C24 H242 LPP sing 587 n n 
C25 C26 LPP sing 588 n n 
C25 H251 LPP sing 589 n n 
C25 H252 LPP sing 590 n n 
C26 H261 LPP sing 591 n n 
C26 H262 LPP sing 592 n n 
C26 H263 LPP sing 593 n n 
C29 O28 LPP doub 594 n n 
C29 C30 LPP sing 595 n n 
C30 C31 LPP sing 596 n n 
C30 H301 LPP sing 597 n n 
C30 H302 LPP sing 598 n n 
C31 C32 LPP sing 599 n n 
C31 H311 LPP sing 600 n n 
C31 H312 LPP sing 601 n n 
C32 C33 LPP sing 602 n n 
C32 H321 LPP sing 603 n n 
C32 H322 LPP sing 604 n n 
C33 C34 LPP sing 605 n n 
C33 H331 LPP sing 606 n n 
C33 H332 LPP sing 607 n n 
C34 C35 LPP sing 608 n n 
C34 H341 LPP sing 609 n n 
C34 H342 LPP sing 610 n n 
C35 C36 LPP sing 611 n n 
C35 H351 LPP sing 612 n n 
C35 H352 LPP sing 613 n n 
C36 C37 LPP sing 614 n n 
C36 H361 LPP sing 615 n n 
C36 H362 LPP sing 616 n n 
C37 C38 LPP sing 617 n n 
C37 H371 LPP sing 618 n n 
C37 H372 LPP sing 619 n n 
C38 C39 LPP sing 620 n n 
C38 H381 LPP sing 621 n n 
C38 H382 LPP sing 622 n n 
C39 C40 LPP sing 623 n n 
C39 H391 LPP sing 624 n n 
C39 H392 LPP sing 625 n n 
C40 C41 LPP sing 626 n n 
C40 H401 LPP sing 627 n n 
C40 H402 LPP sing 628 n n 
C41 C42 LPP sing 629 n n 
C41 H411 LPP sing 630 n n 
C41 H412 LPP sing 631 n n 
C42 C43 LPP sing 632 n n 
C42 H421 LPP sing 633 n n 
C42 H422 LPP sing 634 n n 
C43 C44 LPP sing 635 n n 
C43 H431 LPP sing 636 n n 
C43 H432 LPP sing 637 n n 
C44 H441 LPP sing 638 n n 
C44 H442 LPP sing 639 n n 
C44 H443 LPP sing 640 n n 
#
_atom_sites.entry_id                     6TDV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
MA 20 CDL A 1 501 4 CDL CDL . 
NA 20 CDL A 1 502 5 CDL CDL . 
OA 20 CDL A 1 503 6 CDL CDL . 
PA 20 CDL A 1 504 7 CDL CDL . 
QA 20 CDL D 1 201 3 CDL CDL . 
RA 20 CDL D 1 202 10 CDL CDL . 
SA 21 LMT D 1 203 2 LMT LMT . 
TA 20 CDL E 1 101 9 CDL CDL . 
UA 22 LPP F 1 301 5 LPP LPP . 
VA 21 LMT F 1 302 1 LMT LMT . 
WA 23 TRT G 1 201 2 TRT TRT . 
XA 23 TRT G 1 202 4 TRT TRT . 
YA 22 LPP I 1 101 2 LPP LPP . 
ZA 23 TRT M 1 201 5 TRT TRT . 
AB 23 TRT M 1 202 8 TRT TRT . 
BB 20 CDL M 1 203 11 CDL CDL . 
CB 20 CDL M 1 204 12 CDL CDL . 
DB 23 TRT N 1 201 6 TRT TRT . 
EB 23 TRT N 1 202 7 TRT TRT . 
FB 22 LPP N 1 203 4 LPP LPP . 
GB 21 LMT N 1 204 3 LMT LMT . 
HB 20 CDL O 1 201 8 CDL CDL . 
IB 22 LPP O 1 202 1 LPP LPP . 
JB 22 LPP O 1 203 3 LPP LPP . 
KB 20 CDL P 1 201 1 CDL CDL . 
LB 22 LPP P 1 202 4 LPP LPP . 
MB 23 TRT P 1 203 1 TRT TRT . 
NB 21 LMT Q 1 101 4 LMT LMT . 
OB 20 CDL R 1 101 2 CDL CDL . 
PB 22 LPP R 1 102 6 LPP LPP . 
QB 23 TRT R 1 103 3 TRT TRT . 
RB 20 CDL a 1 501 4 CDL CDL . 
SB 20 CDL a 1 502 5 CDL CDL . 
TB 20 CDL a 1 503 6 CDL CDL . 
UB 20 CDL a 1 504 7 CDL CDL . 
VB 20 CDL d 1 201 3 CDL CDL . 
WB 20 CDL d 1 202 10 CDL CDL . 
XB 21 LMT d 1 203 2 LMT LMT . 
YB 20 CDL e 1 101 9 CDL CDL . 
ZB 22 LPP f 1 301 5 LPP LPP . 
AC 21 LMT f 1 302 1 LMT LMT . 
BC 23 TRT g 1 201 2 TRT TRT . 
CC 23 TRT g 1 202 4 TRT TRT . 
DC 22 LPP i 1 101 2 LPP LPP . 
EC 20 CDL m 1 201 11 CDL CDL . 
FC 20 CDL m 1 202 12 CDL CDL . 
GC 23 TRT m 1 203 5 TRT TRT . 
HC 23 TRT m 1 204 8 TRT TRT . 
IC 21 LMT n 1 201 3 LMT LMT . 
JC 23 TRT n 1 202 6 TRT TRT . 
KC 23 TRT n 1 203 7 TRT TRT . 
LC 20 CDL o 1 201 8 CDL CDL . 
MC 22 LPP o 1 202 1 LPP LPP . 
NC 22 LPP o 1 203 3 LPP LPP . 
OC 20 CDL p 1 201 13 CDL CDL . 
PC 20 CDL p 1 202 1 CDL CDL . 
QC 23 TRT p 1 203 1 TRT TRT . 
RC 21 LMT q 1 101 4 LMT LMT . 
SC 20 CDL r 1 101 2 CDL CDL . 
TC 22 LPP r 1 102 6 LPP LPP . 
UC 23 TRT r 1 103 3 TRT TRT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 LPP . . . UA 22 321.716 256.518 180.245 1 53.66 ? P1 LPP 301 F 1 
HETATM 2 O O2 LPP . . . UA 22 321.882 257.268 181.544 1 53.66 ? O2 LPP 301 F 1 
HETATM 3 O O3 LPP . . . UA 22 320.807 255.336 180.461 1 53.66 ? O3 LPP 301 F 1 
HETATM 4 O O4 LPP . . . UA 22 323.067 256.032 179.763 1 53.66 ? O4 LPP 301 F 1 
HETATM 5 O O5 LPP . . . UA 22 321.051 257.524 179.102 1 53.66 ? O5 LPP 301 F 1 
HETATM 6 C C6 LPP . . . UA 22 320.752 256.97 177.841 1 53.66 ? C6 LPP 301 F 1 
HETATM 7 C C7 LPP . . . UA 22 319.708 257.825 177.123 1 53.66 ? C7 LPP 301 F 1 
HETATM 8 C C8 LPP . . . UA 22 320.303 259.181 176.762 1 53.66 ? C8 LPP 301 F 1 
HETATM 9 O O9 LPP . . . UA 22 319.306 257.185 175.932 1 53.66 ? O9 LPP 301 F 1 
HETATM 10 O O27 LPP . . . UA 22 319.549 259.762 175.726 1 53.66 ? O27 LPP 301 F 1 
HETATM 11 C C11 LPP . . . UA 22 318.276 256.207 176.072 1 53.66 ? C11 LPP 301 F 1 
HETATM 12 O O10 LPP . . . UA 22 318.031 255.734 177.13 1 53.66 ? O10 LPP 301 F 1 
HETATM 13 C C12 LPP . . . UA 22 317.474 255.754 174.813 1 53.66 ? C12 LPP 301 F 1 
HETATM 14 C C13 LPP . . . UA 22 316.687 256.94 174.242 1 53.66 ? C13 LPP 301 F 1 
HETATM 15 C C14 LPP . . . UA 22 316.302 256.641 172.775 1 53.66 ? C14 LPP 301 F 1 
HETATM 16 C C15 LPP . . . UA 22 317.388 257.158 171.841 1 53.66 ? C15 LPP 301 F 1 
HETATM 17 C C16 LPP . . . UA 22 317.041 256.806 170.388 1 53.66 ? C16 LPP 301 F 1 
HETATM 18 C C17 LPP . . . UA 22 317.534 255.373 170.062 1 53.66 ? C17 LPP 301 F 1 
HETATM 19 C C29 LPP . . . UA 22 319.806 261.137 175.546 1 53.66 ? C29 LPP 301 F 1 
HETATM 20 O O28 LPP . . . UA 22 320.877 261.577 175.81 1 53.66 ? O28 LPP 301 F 1 
HETATM 21 C C30 LPP . . . UA 22 318.704 262.07 175.002 1 53.66 ? C30 LPP 301 F 1 
HETATM 22 C C31 LPP . . . UA 22 317.365 261.77 175.708 1 53.66 ? C31 LPP 301 F 1 
HETATM 23 C C32 LPP . . . UA 22 316.202 262.291 174.822 1 53.66 ? C32 LPP 301 F 1 
HETATM 24 C C33 LPP . . . UA 22 314.888 261.544 175.187 1 53.66 ? C33 LPP 301 F 1 
HETATM 25 H HC61 LPP . . . UA 22 320.404 256.074 177.966 1 53.66 ? HC61 LPP 301 F 1 
HETATM 26 H HC62 LPP . . . UA 22 321.561 256.928 177.311 1 53.66 ? HC62 LPP 301 F 1 
HETATM 27 H HC7 LPP . . . UA 22 318.943 257.959 177.702 1 53.66 ? HC7 LPP 301 F 1 
HETATM 28 H HC81 LPP . . . UA 22 320.296 259.762 177.537 1 53.66 ? HC81 LPP 301 F 1 
HETATM 29 H HC82 LPP . . . UA 22 321.215 259.063 176.461 1 53.66 ? HC82 LPP 301 F 1 
HETATM 30 H H121 LPP . . . UA 22 318.09 255.42 174.143 1 53.66 ? H121 LPP 301 F 1 
HETATM 31 H H122 LPP . . . UA 22 316.856 255.05 175.063 1 53.66 ? H122 LPP 301 F 1 
HETATM 32 H H131 LPP . . . UA 22 315.882 257.077 174.764 1 53.66 ? H131 LPP 301 F 1 
HETATM 33 H H132 LPP . . . UA 22 317.235 257.738 174.278 1 53.66 ? H132 LPP 301 F 1 
HETATM 34 H H141 LPP . . . UA 22 315.464 257.082 172.569 1 53.66 ? H141 LPP 301 F 1 
HETATM 35 H H142 LPP . . . UA 22 316.202 255.685 172.656 1 53.66 ? H142 LPP 301 F 1 
HETATM 36 H H151 LPP . . . UA 22 317.457 258.122 171.93 1 53.66 ? H151 LPP 301 F 1 
HETATM 37 H H152 LPP . . . UA 22 318.236 256.751 172.075 1 53.66 ? H152 LPP 301 F 1 
HETATM 38 H H161 LPP . . . UA 22 316.081 256.853 170.264 1 53.66 ? H161 LPP 301 F 1 
HETATM 39 H H162 LPP . . . UA 22 317.473 257.437 169.792 1 53.66 ? H162 LPP 301 F 1 
HETATM 40 H H171 LPP . . . UA 22 317.138 254.744 170.685 1 53.66 ? H171 LPP 301 F 1 
HETATM 41 H H172 LPP . . . UA 22 318.5 255.337 170.137 1 53.66 ? H172 LPP 301 F 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    194 
_model_server_stats.query_time_ms           453 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           41 
#