data_6TDY
#
_model_server_result.job_id            77U7y48kShaIoPlorSn7WA 
_model_server_result.datetime_utc      '2024-12-26 10:38:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tdy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":600}' 
#
_entry.id    6TDY 
#
_exptl.entry_id    6TDY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              352.508 
_entity.id                          15 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FRAGMENT OF TRITON X-100' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TDY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TDY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    26-meric 
_pdbx_struct_assembly.oligomeric_count      26 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      15 
_struct_asym.id                             IA 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 190 A THR 191 1_555 BA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 AA O3G ATP . A ATP 601 1_555 BA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc3 AA O2B ATP . A ATP 601 1_555 BA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc4 B OG1 THR 190 B THR 191 1_555 DA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc5 CA O3G ATP . B ATP 601 1_555 DA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc6 CA O2B ATP . B ATP 601 1_555 DA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
metalc ? metalc7 C OG1 THR 190 C THR 191 1_555 FA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc8 EA O1G ATP . C ATP 601 1_555 FA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc9 EA O2B ATP . C ATP 601 1_555 FA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? 
metalc ? metalc10 D OG1 THR 167 D THR 174 1_555 HA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc11 GA O3B ADP . D ADP 601 1_555 HA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc12 F OG1 THR 167 F THR 174 1_555 KA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc13 JA O3G ATP . F ATP 601 1_555 KA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc14 JA O2B ATP . F ATP 601 1_555 KA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? 
#
_chem_comp.formula           'C21 H36 O4' 
_chem_comp.formula_weight    352.508 
_chem_comp.id                TRT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FRAGMENT OF TRITON X-100' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-{2-[2-(2-METHOXYETHOXY)ETHOXY]ETHOXY}-4-(1,1,3,3-TETRAMETHYLBUTYL)BENZENE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 O24 TRT sing 425 n n 
C25 H251 TRT sing 426 n n 
C25 H252 TRT sing 427 n n 
C25 H253 TRT sing 428 n n 
O24 C23 TRT sing 429 n n 
C23 C22 TRT sing 430 n n 
C23 H231 TRT sing 431 n n 
C23 H232 TRT sing 432 n n 
C22 O21 TRT sing 433 n n 
C22 H221 TRT sing 434 n n 
C22 H222 TRT sing 435 n n 
O21 C20 TRT sing 436 n n 
C20 C19 TRT sing 437 n n 
C20 H201 TRT sing 438 n n 
C20 H202 TRT sing 439 n n 
C19 O18 TRT sing 440 n n 
C19 H191 TRT sing 441 n n 
C19 H192 TRT sing 442 n n 
O18 C17 TRT sing 443 n n 
C17 C16 TRT sing 444 n n 
C17 H171 TRT sing 445 n n 
C17 H172 TRT sing 446 n n 
C16 O15 TRT sing 447 n n 
C16 H161 TRT sing 448 n n 
C16 H162 TRT sing 449 n n 
O15 C12 TRT sing 450 n n 
C12 C13 TRT doub 451 n y 
C12 C11 TRT sing 452 n y 
C13 C14 TRT sing 453 n y 
C13 H13 TRT sing 454 n n 
C14 C9 TRT doub 455 n y 
C14 H14 TRT sing 456 n n 
C11 C10 TRT doub 457 n y 
C11 H11 TRT sing 458 n n 
C10 C9 TRT sing 459 n y 
C10 H10 TRT sing 460 n n 
C9 C6 TRT sing 461 n n 
C6 C8 TRT sing 462 n n 
C6 C7 TRT sing 463 n n 
C6 C5 TRT sing 464 n n 
C8 H8C1 TRT sing 465 n n 
C8 H8C2 TRT sing 466 n n 
C8 H8C3 TRT sing 467 n n 
C7 H7C1 TRT sing 468 n n 
C7 H7C2 TRT sing 469 n n 
C7 H7C3 TRT sing 470 n n 
C5 C1 TRT sing 471 n n 
C5 H5C1 TRT sing 472 n n 
C5 H5C2 TRT sing 473 n n 
C1 C2 TRT sing 474 n n 
C1 C4 TRT sing 475 n n 
C1 C3 TRT sing 476 n n 
C2 H2C1 TRT sing 477 n n 
C2 H2C2 TRT sing 478 n n 
C2 H2C3 TRT sing 479 n n 
C4 H4C1 TRT sing 480 n n 
C4 H4C2 TRT sing 481 n n 
C4 H4C3 TRT sing 482 n n 
C3 H3C1 TRT sing 483 n n 
C3 H3C2 TRT sing 484 n n 
C3 H3C3 TRT sing 485 n n 
#
_atom_sites.entry_id                     6TDY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
AA 12 ATP A 1 601 2 ATP ATP . 
BA 13 MG A 1 602 1 MG MG . 
CA 12 ATP B 1 601 3 ATP ATP . 
DA 13 MG B 1 602 2 MG MG . 
EA 12 ATP C 1 601 1 ATP ATP . 
FA 13 MG C 1 602 5 MG MG . 
GA 14 ADP D 1 601 5 ADP ADP . 
HA 13 MG D 1 602 4 MG MG . 
IA 15 TRT E 1 600 600 TRT TRT . 
JA 12 ATP F 1 601 4 ATP ATP . 
KA 13 MG F 1 602 3 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C25 TRT . . . IA 15 351.476 193.132 285.411 1 39.68 ? C25 TRT 600 E 1 
HETATM 2 O O24 TRT . . . IA 15 351.221 192.017 286.207 1 39.68 ? O24 TRT 600 E 1 
HETATM 3 C C23 TRT . . . IA 15 350.3 192.268 287.218 1 39.68 ? C23 TRT 600 E 1 
HETATM 4 C C22 TRT . . . IA 15 350.04 191.012 288.028 1 39.68 ? C22 TRT 600 E 1 
HETATM 5 O O21 TRT . . . IA 15 349.391 191.353 289.214 1 39.68 ? O21 TRT 600 E 1 
HETATM 6 C C20 TRT . . . IA 15 349.181 190.27 290.069 1 39.68 ? C20 TRT 600 E 1 
HETATM 7 C C19 TRT . . . IA 15 348.533 190.779 291.35 1 39.68 ? C19 TRT 600 E 1 
HETATM 8 O O18 TRT . . . IA 15 347.335 191.415 291.004 1 39.68 ? O18 TRT 600 E 1 
HETATM 9 C C17 TRT . . . IA 15 346.635 191.94 292.088 1 39.68 ? C17 TRT 600 E 1 
HETATM 10 C C16 TRT . . . IA 15 345.145 191.832 291.808 1 39.68 ? C16 TRT 600 E 1 
HETATM 11 O O15 TRT . . . IA 15 344.518 193.076 291.69 1 39.68 ? O15 TRT 600 E 1 
HETATM 12 C C12 TRT . . . IA 15 343.119 193.106 291.493 1 39.68 ? C12 TRT 600 E 1 
HETATM 13 C C13 TRT . . . IA 15 342.567 194.219 290.911 1 39.68 ? C13 TRT 600 E 1 
HETATM 14 C C14 TRT . . . IA 15 341.207 194.316 290.727 1 39.68 ? C14 TRT 600 E 1 
HETATM 15 C C11 TRT . . . IA 15 342.268 192.083 291.873 1 39.68 ? C11 TRT 600 E 1 
HETATM 16 C C10 TRT . . . IA 15 340.909 192.169 291.67 1 39.68 ? C10 TRT 600 E 1 
HETATM 17 C C9 TRT . . . IA 15 340.34 193.296 291.099 1 39.68 ? C9 TRT 600 E 1 
HETATM 18 C C6 TRT . . . IA 15 338.808 193.407 290.877 1 39.68 ? C6 TRT 600 E 1 
HETATM 19 C C8 TRT . . . IA 15 338.4 194.887 290.886 1 39.68 ? C8 TRT 600 E 1 
HETATM 20 C C7 TRT . . . IA 15 338.526 192.87 289.481 1 39.68 ? C7 TRT 600 E 1 
HETATM 21 C C5 TRT . . . IA 15 338.059 192.582 291.968 1 39.68 ? C5 TRT 600 E 1 
HETATM 22 C C1 TRT . . . IA 15 336.546 192.771 292.248 1 39.68 ? C1 TRT 600 E 1 
HETATM 23 C C2 TRT . . . IA 15 335.675 192.758 290.997 1 39.68 ? C2 TRT 600 E 1 
HETATM 24 C C4 TRT . . . IA 15 336.111 191.544 293.055 1 39.68 ? C4 TRT 600 E 1 
HETATM 25 C C3 TRT . . . IA 15 336.23 194.005 293.109 1 39.68 ? C3 TRT 600 E 1 
HETATM 26 H H251 TRT . . . IA 15 352.146 192.908 284.75 1 39.68 ? H251 TRT 600 E 1 
HETATM 27 H H252 TRT . . . IA 15 351.801 193.856 285.967 1 39.68 ? H252 TRT 600 E 1 
HETATM 28 H H253 TRT . . . IA 15 350.661 193.404 284.969 1 39.68 ? H253 TRT 600 E 1 
HETATM 29 H H231 TRT . . . IA 15 349.471 192.58 286.829 1 39.68 ? H231 TRT 600 E 1 
HETATM 30 H H232 TRT . . . IA 15 350.652 192.939 287.807 1 39.68 ? H232 TRT 600 E 1 
HETATM 31 H H221 TRT . . . IA 15 350.881 190.581 288.234 1 39.68 ? H221 TRT 600 E 1 
HETATM 32 H H222 TRT . . . IA 15 349.478 190.414 287.521 1 39.68 ? H222 TRT 600 E 1 
HETATM 33 H H201 TRT . . . IA 15 350.027 189.85 290.274 1 39.68 ? H201 TRT 600 E 1 
HETATM 34 H H202 TRT . . . IA 15 348.593 189.636 289.641 1 39.68 ? H202 TRT 600 E 1 
HETATM 35 H H191 TRT . . . IA 15 348.355 190.031 291.937 1 39.68 ? H191 TRT 600 E 1 
HETATM 36 H H192 TRT . . . IA 15 349.12 191.409 291.795 1 39.68 ? H192 TRT 600 E 1 
HETATM 37 H H171 TRT . . . IA 15 346.845 191.438 292.89 1 39.68 ? H171 TRT 600 E 1 
HETATM 38 H H172 TRT . . . IA 15 346.876 192.867 292.218 1 39.68 ? H172 TRT 600 E 1 
HETATM 39 H H161 TRT . . . IA 15 345.006 191.364 290.979 1 39.68 ? H161 TRT 600 E 1 
HETATM 40 H H162 TRT . . . IA 15 344.778 191.321 292.538 1 39.68 ? H162 TRT 600 E 1 
HETATM 41 H H13 TRT . . . IA 15 343.114 194.925 290.666 1 39.68 ? H13 TRT 600 E 1 
HETATM 42 H H14 TRT . . . IA 15 340.883 195.085 290.332 1 39.68 ? H14 TRT 600 E 1 
HETATM 43 H H11 TRT . . . IA 15 342.615 191.317 292.262 1 39.68 ? H11 TRT 600 E 1 
HETATM 44 H H10 TRT . . . IA 15 340.374 191.464 291.937 1 39.68 ? H10 TRT 600 E 1 
HETATM 45 H H8C1 TRT . . . IA 15 337.454 194.974 290.798 1 39.68 ? H8C1 TRT 600 E 1 
HETATM 46 H H8C2 TRT . . . IA 15 338.773 195.364 290.139 1 39.68 ? H8C2 TRT 600 E 1 
HETATM 47 H H8C3 TRT . . . IA 15 338.677 195.294 291.721 1 39.68 ? H8C3 TRT 600 E 1 
HETATM 48 H H7C1 TRT . . . IA 15 339.223 193.175 288.884 1 39.68 ? H7C1 TRT 600 E 1 
HETATM 49 H H7C2 TRT . . . IA 15 338.51 191.9 289.502 1 39.68 ? H7C2 TRT 600 E 1 
HETATM 50 H H7C3 TRT . . . IA 15 337.676 193.211 289.169 1 39.68 ? H7C3 TRT 600 E 1 
HETATM 51 H H5C1 TRT . . . IA 15 338.176 191.646 291.754 1 39.68 ? H5C1 TRT 600 E 1 
HETATM 52 H H5C2 TRT . . . IA 15 338.493 192.742 292.816 1 39.68 ? H5C2 TRT 600 E 1 
HETATM 53 H H2C1 TRT . . . IA 15 336.04 192.127 290.364 1 39.68 ? H2C1 TRT 600 E 1 
HETATM 54 H H2C2 TRT . . . IA 15 334.772 192.497 291.219 1 39.68 ? H2C2 TRT 600 E 1 
HETATM 55 H H2C3 TRT . . . IA 15 335.657 193.639 290.597 1 39.68 ? H2C3 TRT 600 E 1 
HETATM 56 H H4C1 TRT . . . IA 15 336.642 191.48 293.862 1 39.68 ? H4C1 TRT 600 E 1 
HETATM 57 H H4C2 TRT . . . IA 15 336.234 190.744 292.525 1 39.68 ? H4C2 TRT 600 E 1 
HETATM 58 H H4C3 TRT . . . IA 15 335.176 191.615 293.3 1 39.68 ? H4C3 TRT 600 E 1 
HETATM 59 H H3C1 TRT . . . IA 15 336.938 194.148 293.751 1 39.68 ? H3C1 TRT 600 E 1 
HETATM 60 H H3C2 TRT . . . IA 15 335.397 193.873 293.583 1 39.68 ? H3C2 TRT 600 E 1 
HETATM 61 H H3C3 TRT . . . IA 15 336.13 194.792 292.567 1 39.68 ? H3C3 TRT 600 E 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    118 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           61 
#