data_6TDZ # _model_server_result.job_id C1Dv632fDgq2rmtcm19liQ _model_server_result.datetime_utc '2025-02-05 14:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":601}' # _entry.id 6TDZ # _exptl.entry_id 6TDZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TDZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 26-meric _pdbx_struct_assembly.oligomeric_count 26 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 AA N N ? 12 CA N N ? 12 EA N N ? 12 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 Q OG1 THR 190 B THR 191 1_555 BA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc2 AA O3G ATP . B ATP 601 1_555 BA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc3 AA O2B ATP . B ATP 601 1_555 BA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc4 R OG1 THR 190 C THR 191 1_555 DA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 CA O3G ATP . C ATP 601 1_555 DA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc6 CA O2B ATP . C ATP 601 1_555 DA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.777 ? metalc ? metalc7 S OG1 THR 190 A THR 191 1_555 FA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 EA O3G ATP . A ATP 601 1_555 FA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc9 EA O2B ATP . A ATP 601 1_555 FA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.724 ? metalc ? metalc10 T OG1 THR 167 E THR 174 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc11 V OG1 THR 167 D THR 174 1_555 KA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc12 JA O1G ATP . D ATP 601 1_555 KA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc13 JA O2B ATP . D ATP 601 1_555 KA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6TDZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code AA 12 ATP B 1 601 2 ATP ATP . BA 13 MG B 1 602 1 MG MG . CA 12 ATP C 1 601 3 ATP ATP . DA 13 MG C 1 602 2 MG MG . EA 12 ATP A 1 601 1 ATP ATP . FA 13 MG A 1 602 5 MG MG . GA 14 ADP E 1 601 5 ADP ADP . HA 13 MG E 1 602 4 MG MG . IA 15 TRT F 1 600 600 TRT TRT . JA 12 ATP D 1 601 4 ATP ATP . KA 13 MG D 1 602 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . EA 12 313.666 192.155 315.007 1 31.56 ? PG ATP 601 A 1 HETATM 2 O O1G ATP . . . EA 12 315.055 192.026 314.447 1 31.56 ? O1G ATP 601 A 1 HETATM 3 O O2G ATP . . . EA 12 313.111 193.552 315.015 1 31.56 ? O2G ATP 601 A 1 HETATM 4 O O3G ATP . . . EA 12 313.454 191.382 316.283 1 31.56 ? O3G ATP 601 A 1 HETATM 5 P PB ATP . . . EA 12 312.852 189.833 313.665 1 31.56 ? PB ATP 601 A 1 HETATM 6 O O1B ATP . . . EA 12 313.974 189.613 312.696 1 31.56 ? O1B ATP 601 A 1 HETATM 7 O O2B ATP . . . EA 12 312.806 189.099 314.979 1 31.56 ? O2B ATP 601 A 1 HETATM 8 O O3B ATP . . . EA 12 312.739 191.41 313.935 1 31.56 ? O3B ATP 601 A 1 HETATM 9 P PA ATP . . . EA 12 310.474 188.376 313.11 1 31.56 ? PA ATP 601 A 1 HETATM 10 O O1A ATP . . . EA 12 309.745 188.629 314.402 1 31.56 ? O1A ATP 601 A 1 HETATM 11 O O2A ATP . . . EA 12 311.119 187.042 312.877 1 31.56 ? O2A ATP 601 A 1 HETATM 12 O O3A ATP . . . EA 12 311.495 189.583 312.852 1 31.56 ? O3A ATP 601 A 1 HETATM 13 O O5' ATP . . . EA 12 309.464 188.663 311.903 1 31.56 ? O5' ATP 601 A 1 HETATM 14 C C5' ATP . . . EA 12 308.957 189.985 311.783 1 31.56 ? C5' ATP 601 A 1 HETATM 15 C C4' ATP . . . EA 12 307.745 190.043 310.871 1 31.56 ? C4' ATP 601 A 1 HETATM 16 O O4' ATP . . . EA 12 307.97 189.247 309.715 1 31.56 ? O4' ATP 601 A 1 HETATM 17 C C3' ATP . . . EA 12 306.484 189.514 311.527 1 31.56 ? C3' ATP 601 A 1 HETATM 18 O O3' ATP . . . EA 12 305.364 190.318 311.156 1 31.56 ? O3' ATP 601 A 1 HETATM 19 C C2' ATP . . . EA 12 306.325 188.135 310.954 1 31.56 ? C2' ATP 601 A 1 HETATM 20 O O2' ATP . . . EA 12 304.965 187.705 310.954 1 31.56 ? O2' ATP 601 A 1 HETATM 21 C C1' ATP . . . EA 12 306.885 188.34 309.567 1 31.56 ? C1' ATP 601 A 1 HETATM 22 N N9 ATP . . . EA 12 307.363 187.087 308.979 1 31.56 ? N9 ATP 601 A 1 HETATM 23 C C8 ATP . . . EA 12 308.536 186.508 309.244 1 31.56 ? C8 ATP 601 A 1 HETATM 24 N N7 ATP . . . EA 12 308.674 185.37 308.54 1 31.56 ? N7 ATP 601 A 1 HETATM 25 C C5 ATP . . . EA 12 307.562 185.234 307.81 1 31.56 ? C5 ATP 601 A 1 HETATM 26 C C6 ATP . . . EA 12 307.069 184.251 306.85 1 31.56 ? C6 ATP 601 A 1 HETATM 27 N N6 ATP . . . EA 12 307.864 183.202 306.58 1 31.56 ? N6 ATP 601 A 1 HETATM 28 N N1 ATP . . . EA 12 305.857 184.453 306.3 1 31.56 ? N1 ATP 601 A 1 HETATM 29 C C2 ATP . . . EA 12 305.108 185.524 306.611 1 31.56 ? C2 ATP 601 A 1 HETATM 30 N N3 ATP . . . EA 12 305.504 186.46 307.485 1 31.56 ? N3 ATP 601 A 1 HETATM 31 C C4 ATP . . . EA 12 306.698 186.365 308.1 1 31.56 ? C4 ATP 601 A 1 HETATM 32 H "H5'1" ATP . . . EA 12 309.737 190.623 311.382 1 31.56 ? "H5'1" ATP 601 A 1 HETATM 33 H "H5'2" ATP . . . EA 12 308.696 190.359 312.769 1 31.56 ? "H5'2" ATP 601 A 1 HETATM 34 H H4' ATP . . . EA 12 307.577 191.082 310.576 1 31.56 ? H4' ATP 601 A 1 HETATM 35 H H3' ATP . . . EA 12 306.594 189.461 312.613 1 31.56 ? H3' ATP 601 A 1 HETATM 36 H HO3' ATP . . . EA 12 304.575 190.024 311.63 1 31.56 ? HO3' ATP 601 A 1 HETATM 37 H H2' ATP . . . EA 12 306.954 187.435 311.507 1 31.56 ? H2' ATP 601 A 1 HETATM 38 H HO2' ATP . . . EA 12 304.653 187.671 311.87 1 31.56 ? HO2' ATP 601 A 1 HETATM 39 H H1' ATP . . . EA 12 306.109 188.779 308.936 1 31.56 ? H1' ATP 601 A 1 HETATM 40 H H8 ATP . . . EA 12 309.259 186.9 309.931 1 31.56 ? H8 ATP 601 A 1 HETATM 41 H HN61 ATP . . . EA 12 308.758 183.129 307.04 1 31.56 ? HN61 ATP 601 A 1 HETATM 42 H HN62 ATP . . . EA 12 307.586 182.5 305.932 1 31.56 ? HN62 ATP 601 A 1 HETATM 43 H H2 ATP . . . EA 12 304.141 185.639 306.143 1 31.56 ? H2 ATP 601 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 100 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #