data_6TE0 # _model_server_result.job_id 99XnIfjZE04jNTii95F5sA _model_server_result.datetime_utc '2024-12-26 10:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6te0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":601}' # _entry.id 6TE0 # _exptl.entry_id 6TE0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TE0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 11 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 190 C THR 191 1_555 Y MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 X O3G ATP . C ATP 601 1_555 Y MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 B OG1 THR 190 A THR 191 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 Z O1G ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc5 Z O3G ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 Z O1B ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc7 Z O3B ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc8 C OG1 THR 190 B THR 191 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 BA O1G ATP . B ATP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc10 BA O3G ATP . B ATP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc11 BA O2B ATP . B ATP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? metalc ? metalc12 D OG1 THR 167 F THR 174 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc13 D OE1 GLU 196 F GLU 203 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc14 D OE2 GLU 196 F GLU 203 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc15 DA O3B ADP . F ADP 601 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc16 F OG1 THR 167 E THR 174 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 GA O3G ATP . E ATP 601 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc18 GA O1B ATP . E ATP 601 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc19 GA O2B ATP . E ATP 601 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6TE0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 9 ATP C 1 601 2 ATP ATP . Y 10 MG C 1 602 1 MG MG . Z 9 ATP A 1 601 3 ATP ATP . AA 10 MG A 1 602 2 MG MG . BA 9 ATP B 1 601 1 ATP ATP . CA 10 MG B 1 602 5 MG MG . DA 11 ADP F 1 601 5 ADP ADP . EA 10 MG F 1 602 4 MG MG . FA 12 TRT D 1 600 600 TRT TRT . GA 9 ATP E 1 601 4 ATP ATP . HA 10 MG E 1 602 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . DA 11 357.992 220.966 293.169 1 57.15 ? PB ADP 601 F 1 HETATM 2 O O1B ADP . . . DA 11 357.664 222.369 292.755 1 57.15 ? O1B ADP 601 F 1 HETATM 3 O O2B ADP . . . DA 11 356.822 220.146 293.644 1 57.15 ? O2B ADP 601 F 1 HETATM 4 O O3B ADP . . . DA 11 359.252 220.835 293.993 1 57.15 ? O3B ADP 601 F 1 HETATM 5 P PA ADP . . . DA 11 359.389 221.069 290.794 1 57.15 ? PA ADP 601 F 1 HETATM 6 O O1A ADP . . . DA 11 358.832 222.4 290.368 1 57.15 ? O1A ADP 601 F 1 HETATM 7 O O2A ADP . . . DA 11 360.724 220.966 291.482 1 57.15 ? O2A ADP 601 F 1 HETATM 8 O O3A ADP . . . DA 11 358.342 220.321 291.75 1 57.15 ? O3A ADP 601 F 1 HETATM 9 O O5' ADP . . . DA 11 359.34 220.095 289.525 1 57.15 ? O5' ADP 601 F 1 HETATM 10 C C5' ADP . . . DA 11 360.162 220.37 288.404 1 57.15 ? C5' ADP 601 F 1 HETATM 11 C C4' ADP . . . DA 11 359.722 219.506 287.229 1 57.15 ? C4' ADP 601 F 1 HETATM 12 O O4' ADP . . . DA 11 358.324 219.66 286.967 1 57.15 ? O4' ADP 601 F 1 HETATM 13 C C3' ADP . . . DA 11 360.418 219.837 285.932 1 57.15 ? C3' ADP 601 F 1 HETATM 14 O O3' ADP . . . DA 11 361.597 219.048 285.833 1 57.15 ? O3' ADP 601 F 1 HETATM 15 C C2' ADP . . . DA 11 359.392 219.41 284.92 1 57.15 ? C2' ADP 601 F 1 HETATM 16 O O2' ADP . . . DA 11 359.321 217.988 284.76 1 57.15 ? O2' ADP 601 F 1 HETATM 17 C C1' ADP . . . DA 11 358.131 219.938 285.575 1 57.15 ? C1' ADP 601 F 1 HETATM 18 N N9 ADP . . . DA 11 357.928 221.409 285.485 1 57.15 ? N9 ADP 601 F 1 HETATM 19 C C8 ADP . . . DA 11 357.501 222.145 286.527 1 57.15 ? C8 ADP 601 F 1 HETATM 20 N N7 ADP . . . DA 11 357.383 223.453 286.201 1 57.15 ? N7 ADP 601 F 1 HETATM 21 C C5 ADP . . . DA 11 357.74 223.571 284.919 1 57.15 ? C5 ADP 601 F 1 HETATM 22 C C6 ADP . . . DA 11 357.837 224.685 283.96 1 57.15 ? C6 ADP 601 F 1 HETATM 23 N N6 ADP . . . DA 11 357.524 225.944 284.334 1 57.15 ? N6 ADP 601 F 1 HETATM 24 N N1 ADP . . . DA 11 358.249 224.403 282.708 1 57.15 ? N1 ADP 601 F 1 HETATM 25 C C2 ADP . . . DA 11 358.563 223.147 282.333 1 57.15 ? C2 ADP 601 F 1 HETATM 26 N N3 ADP . . . DA 11 358.49 222.091 283.162 1 57.15 ? N3 ADP 601 F 1 HETATM 27 C C4 ADP . . . DA 11 358.095 222.228 284.444 1 57.15 ? C4 ADP 601 F 1 HETATM 28 H "H5'1" ADP . . . DA 11 361.202 220.163 288.664 1 57.15 ? "H5'1" ADP 601 F 1 HETATM 29 H "H5'2" ADP . . . DA 11 360.075 221.426 288.143 1 57.15 ? "H5'2" ADP 601 F 1 HETATM 30 H H4' ADP . . . DA 11 359.934 218.463 287.473 1 57.15 ? H4' ADP 601 F 1 HETATM 31 H H3' ADP . . . DA 11 360.627 220.906 285.851 1 57.15 ? H3' ADP 601 F 1 HETATM 32 H H2' ADP . . . DA 11 359.596 219.909 283.96 1 57.15 ? H2' ADP 601 F 1 HETATM 33 H HO2' ADP . . . DA 11 360.163 217.652 284.43 1 57.15 ? HO2' ADP 601 F 1 HETATM 34 H H1' ADP . . . DA 11 357.266 219.388 285.191 1 57.15 ? H1' ADP 601 F 1 HETATM 35 H H8 ADP . . . DA 11 357.277 221.755 287.512 1 57.15 ? H8 ADP 601 F 1 HETATM 36 H HN61 ADP . . . DA 11 357.219 226.124 285.279 1 57.15 ? HN61 ADP 601 F 1 HETATM 37 H HN62 ADP . . . DA 11 357.595 226.701 283.671 1 57.15 ? HN62 ADP 601 F 1 HETATM 38 H H2 ADP . . . DA 11 358.886 222.975 281.313 1 57.15 ? H2 ADP 601 F 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 38 #