data_6TE0 # _model_server_result.job_id buKmRugJkdxsU_MuDI5znw _model_server_result.datetime_utc '2024-12-26 10:58:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6te0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":601}' # _entry.id 6TE0 # _exptl.entry_id 6TE0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TE0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 X N N ? 9 Z N N ? 9 BA N N ? 9 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 190 C THR 191 1_555 Y MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 X O3G ATP . C ATP 601 1_555 Y MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc3 B OG1 THR 190 A THR 191 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc4 Z O1G ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc5 Z O3G ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 Z O1B ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc7 Z O3B ATP . A ATP 601 1_555 AA MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc8 C OG1 THR 190 B THR 191 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 BA O1G ATP . B ATP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc10 BA O3G ATP . B ATP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc11 BA O2B ATP . B ATP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? metalc ? metalc12 D OG1 THR 167 F THR 174 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc13 D OE1 GLU 196 F GLU 203 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc14 D OE2 GLU 196 F GLU 203 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc15 DA O3B ADP . F ADP 601 1_555 EA MG MG . F MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc16 F OG1 THR 167 E THR 174 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc17 GA O3G ATP . E ATP 601 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc18 GA O1B ATP . E ATP 601 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc19 GA O2B ATP . E ATP 601 1_555 HA MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6TE0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 9 ATP C 1 601 2 ATP ATP . Y 10 MG C 1 602 1 MG MG . Z 9 ATP A 1 601 3 ATP ATP . AA 10 MG A 1 602 2 MG MG . BA 9 ATP B 1 601 1 ATP ATP . CA 10 MG B 1 602 5 MG MG . DA 11 ADP F 1 601 5 ADP ADP . EA 10 MG F 1 602 4 MG MG . FA 12 TRT D 1 600 600 TRT TRT . GA 9 ATP E 1 601 4 ATP ATP . HA 10 MG E 1 602 3 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . GA 9 340.899 178.011 301.673 1 42.48 ? PG ATP 601 E 1 HETATM 2 O O1G ATP . . . GA 9 342.307 178.293 301.226 1 42.48 ? O1G ATP 601 E 1 HETATM 3 O O2G ATP . . . GA 9 340.17 179.223 302.189 1 42.48 ? O2G ATP 601 E 1 HETATM 4 O O3G ATP . . . GA 9 340.745 176.76 302.502 1 42.48 ? O3G ATP 601 E 1 HETATM 5 P PB ATP . . . GA 9 340.576 176.331 299.526 1 42.48 ? PB ATP 601 E 1 HETATM 6 O O1B ATP . . . GA 9 341.995 176.524 299.067 1 42.48 ? O1B ATP 601 E 1 HETATM 7 O O2B ATP . . . GA 9 340.206 175.129 300.355 1 42.48 ? O2B ATP 601 E 1 HETATM 8 O O3B ATP . . . GA 9 340.124 177.644 300.321 1 42.48 ? O3B ATP 601 E 1 HETATM 9 P PA ATP . . . GA 9 339.688 175.199 297.168 1 42.48 ? PA ATP 601 E 1 HETATM 10 O O1A ATP . . . GA 9 339.426 173.904 297.89 1 42.48 ? O1A ATP 601 E 1 HETATM 11 O O2A ATP . . . GA 9 340.94 175.346 296.341 1 42.48 ? O2A ATP 601 E 1 HETATM 12 O O3A ATP . . . GA 9 339.621 176.383 298.245 1 42.48 ? O3A ATP 601 E 1 HETATM 13 O O5' ATP . . . GA 9 338.388 175.505 296.289 1 42.48 ? O5' ATP 601 E 1 HETATM 14 C C5' ATP . . . GA 9 337.574 174.441 295.814 1 42.48 ? C5' ATP 601 E 1 HETATM 15 C C4' ATP . . . GA 9 336.673 175.029 294.741 1 42.48 ? C4' ATP 601 E 1 HETATM 16 O O4' ATP . . . GA 9 337.424 175.099 293.524 1 42.48 ? O4' ATP 601 E 1 HETATM 17 C C3' ATP . . . GA 9 335.442 174.216 294.399 1 42.48 ? C3' ATP 601 E 1 HETATM 18 O O3' ATP . . . GA 9 334.336 175.104 294.264 1 42.48 ? O3' ATP 601 E 1 HETATM 19 C C2' ATP . . . GA 9 335.771 173.53 293.094 1 42.48 ? C2' ATP 601 E 1 HETATM 20 O O2' ATP . . . GA 9 334.621 173.2 292.318 1 42.48 ? O2' ATP 601 E 1 HETATM 21 C C1' ATP . . . GA 9 336.622 174.602 292.454 1 42.48 ? C1' ATP 601 E 1 HETATM 22 N N9 ATP . . . GA 9 337.425 174.059 291.334 1 42.48 ? N9 ATP 601 E 1 HETATM 23 C C8 ATP . . . GA 9 338.758 174.096 291.202 1 42.48 ? C8 ATP 601 E 1 HETATM 24 N N7 ATP . . . GA 9 339.158 173.473 290.073 1 42.48 ? N7 ATP 601 E 1 HETATM 25 C C5 ATP . . . GA 9 338.06 173.001 289.474 1 42.48 ? C5 ATP 601 E 1 HETATM 26 C C6 ATP . . . GA 9 337.769 172.254 288.241 1 42.48 ? C6 ATP 601 E 1 HETATM 27 N N6 ATP . . . GA 9 338.776 171.874 287.426 1 42.48 ? N6 ATP 601 E 1 HETATM 28 N N1 ATP . . . GA 9 336.48 171.959 287.974 1 42.48 ? N1 ATP 601 E 1 HETATM 29 C C2 ATP . . . GA 9 335.475 172.336 288.789 1 42.48 ? C2 ATP 601 E 1 HETATM 30 N N3 ATP . . . GA 9 335.679 173.025 289.924 1 42.48 ? N3 ATP 601 E 1 HETATM 31 C C4 ATP . . . GA 9 336.925 173.366 290.32 1 42.48 ? C4 ATP 601 E 1 HETATM 32 H "H5'1" ATP . . . GA 9 336.983 174.038 296.637 1 42.48 ? "H5'1" ATP 601 E 1 HETATM 33 H "H5'2" ATP . . . GA 9 338.196 173.644 295.408 1 42.48 ? "H5'2" ATP 601 E 1 HETATM 34 H H4' ATP . . . GA 9 336.35 176.03 295.048 1 42.48 ? H4' ATP 601 E 1 HETATM 35 H H3' ATP . . . GA 9 335.254 173.467 295.176 1 42.48 ? H3' ATP 601 E 1 HETATM 36 H HO3' ATP . . . GA 9 333.549 174.598 294.036 1 42.48 ? HO3' ATP 601 E 1 HETATM 37 H H2' ATP . . . GA 9 336.384 172.644 293.294 1 42.48 ? H2' ATP 601 E 1 HETATM 38 H HO2' ATP . . . GA 9 334.073 172.589 292.827 1 42.48 ? HO2' ATP 601 E 1 HETATM 39 H H1' ATP . . . GA 9 335.952 175.39 292.097 1 42.48 ? H1' ATP 601 E 1 HETATM 40 H H8 ATP . . . GA 9 339.423 174.566 291.895 1 42.48 ? H8 ATP 601 E 1 HETATM 41 H HN61 ATP . . . GA 9 339.726 172.114 287.667 1 42.48 ? HN61 ATP 601 E 1 HETATM 42 H HN62 ATP . . . GA 9 338.579 171.357 286.583 1 42.48 ? HN62 ATP 601 E 1 HETATM 43 H H2 ATP . . . GA 9 334.458 172.074 288.523 1 42.48 ? H2 ATP 601 E 1 # _model_server_stats.io_time_ms 147 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 91 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #